Joint Open Genome and Omics Platform (JoGo)

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geneid	729447
ensemblid	ENSG00000189064.9
hgncid	4099
symbol	GAGE2A
name	G antigen 2A
refseq_nuc	NM_001127212.4
refseq_prot	NP_001120684.1
ensembl_nuc	ENST00000362097.2
ensembl_prot	ENSP00000355421.1
mane_status	MANE Select
chr	chrX
start	49589496
end	49596824
strand	+
ver	v1.2
region	chrX:49589496-49596824
region5000	chrX:49584496-49601824
regionname0	GAGE2A_chrX_49589496_49596824
regionname5000	GAGE2A_chrX_49584496_49601824

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	116	53	2	13	25	3	10	20	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0002	0/0	117	32	10	8	8	1	5	2	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0003	1/0	116	20	8	2	9	0	0	8	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0004	0/0	117	10	9	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005	0/0	117	9	4	1	4	0	0	3	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0006	0/0	117	2	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0007	0/0	116	1	0	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0008	0/0	41	1	0	0	1	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0009	0/0	104	1	0	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0010	0/0	117	1	1	0	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	351	53	2	13	25	3	10	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0002	0/0	354	32	10	8	8	1	5	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0003	1/0	351	20	8	2	9	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0004	0/0	354	10	9	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0005	0/0	354	8	3	1	4	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0006	0/0	354	2	1	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0007	0/0	351	1	0	0	0	1	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0008	0/0	364	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0009	0/0	354	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0010	0/0	354	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
c0011	0/0	353	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/0	208	93	24	22	31	4	11	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0002	0/0	208	16	0	3	10	1	2	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0003	0/0	208	11	5	1	5	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0004	0/0	206	4	4	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0005	0/0	209	2	0	1	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0006	0/0	208	2	0	0	0	0	2	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0007	0/0	208	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
t0008	0/0	209	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	15	1	2	7	3	2	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0002	0/0	6	1	2	1	1	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0003	0/0	5	0	3	2	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0004	0/0	4	4	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0005	0/0	3	0	0	3	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0006	0/0	3	3	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0007	0/0	2	2	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0008	0/0	2	0	2	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0009	0/0	2	0	0	2	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0010	0/0	2	2	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0011	0/0	2	0	2	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0012	0/0	2	0	1	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0013	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0014	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0015	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0016	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0017	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0018	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0019	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0020	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0021	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0022	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0023	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0024	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0025	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0026	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0027	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0028	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0029	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0030	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0031	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0032	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0033	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0034	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0035	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0036	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0037	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0038	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0039	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0040	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0041	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0042	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0043	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0044	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0045	1/0	1	0	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0046	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0047	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0048	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0049	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0050	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0051	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0052	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0053	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0054	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0055	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0056	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0057	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0058	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0059	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0060	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0061	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0062	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0063	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0064	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0065	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0066	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0067	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0068	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0069	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0070	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0071	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0072	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0073	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0074	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0075	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0076	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0077	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0078	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0079	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0080	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0081	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0082	0/0	1	0	0	0	1	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0083	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0084	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0085	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0086	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0087	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0088	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0089	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0090	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0091	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0092	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0093	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
g0094	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	351	53	2	13	25	3	10	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0002c0002	0/0	354	32	10	8	8	1	5	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0003c0003	1/0	351	20	8	2	9	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0004c0004	0/0	354	10	9	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005c0005	0/0	354	8	3	1	4	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005c0009	0/0	354	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0006c0006	0/0	354	2	1	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0007c0007	0/0	351	1	0	0	0	1	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0008c0008	0/0	364	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0009c0011	0/0	353	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0010c0010	0/0	354	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	558	36	2	10	15	3	6	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0001c0001t0002	0/0	558	15	0	3	10	0	2	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0001c0001t0006	0/0	558	2	0	0	0	0	2	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0002c0002t0001	0/0	561	31	10	8	7	1	5	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0002c0002t0005	0/0	562	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0003c0003t0001	1/0	558	9	3	1	4	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0003c0003t0003	0/0	558	11	5	1	5	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0004c0004t0001	0/0	561	6	5	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0004c0004t0004	0/0	559	4	4	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005c0005t0001	0/0	561	6	1	1	4	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005c0005t0007	0/0	561	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005c0005t0008	0/0	562	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0005c0009t0001	0/0	561	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0006c0006t0001	0/0	561	2	1	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0007c0007t0002	0/0	558	1	0	0	0	1	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0008c0008t0001	0/0	571	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0009c0011t0005	0/0	561	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824
a0010c0010t0001	0/0	561	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	copy fasta	chrX	49584496	49601824

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	15	1	2	7	3	2	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0008	0/0	2	0	2	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0009	0/0	2	0	0	2	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0012	0/0	2	0	1	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0013	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0014	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0028	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0030	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0032	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0033	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0034	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0035	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0079	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0083	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0001g0086	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0003	0/0	5	0	3	2	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0005	0/0	3	0	0	3	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0036	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0037	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0038	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0039	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0040	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0041	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0002g0085	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0006g0080	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0001c0001t0006g0081	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0002	0/0	6	1	2	1	1	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0006	0/0	3	3	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0011	0/0	2	0	2	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0015	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0016	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0019	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0020	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0049	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0050	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0054	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0055	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0057	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0059	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0063	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0065	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0066	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0067	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0068	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0069	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0070	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0076	0/0	1	0	0	0	0	1	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0077	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0001g0094	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0002c0002t0005g0084	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0017	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0023	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0024	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0025	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0026	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0042	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0045	1/0	1	0	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0091	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0001g0092	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0010	0/0	2	2	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0022	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0043	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0044	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0046	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0047	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0048	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0051	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0052	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0003c0003t0003g0088	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0004c0004t0001g0007	0/0	2	2	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0004c0004t0001g0062	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0004c0004t0001g0064	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0004c0004t0001g0073	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0004c0004t0001g0093	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0004c0004t0004g0004	0/0	4	4	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0001g0072	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0001g0074	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0001g0075	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0001g0087	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0001g0089	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0001g0090	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0007g0018	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0005t0008g0056	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0005c0009t0001g0071	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0006c0006t0001g0061	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0006c0006t0001g0078	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0007c0007t0002g0082	0/0	1	0	0	0	1	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0008c0008t0001g0060	0/0	1	0	0	1	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0009c0011t0005g0058	0/0	1	0	1	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
a0010c0010t0001g0053	0/0	1	1	0	0	0	0	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00099	hp2	a0002	c0002	t0001	g0002	EUR	GBR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00423	hp1	a0001	c0001	t0002	g0039	EAS	CHS	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00423	hp2	a0002	c0002	t0001	g0002	EAS	CHS	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00438	hp1	a0001	c0001	t0002	g0003	EAS	CHS	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00438	hp2	a0002	c0002	t0001	g0015	EAS	CHS	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00639	hp1	a0001	c0001	t0001	g0013	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00639	hp2	a0004	c0004	t0001	g0093	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00741	hp1	a0006	c0006	t0001	g0061	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG00741	hp2	a0002	c0002	t0001	g0057	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01069	hp1	a0002	c0002	t0001	g0016	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01167	hp1	a0002	c0002	t0001	g0094	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01175	hp1	a0001	c0001	t0001	g0008	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01175	hp2	a0002	c0002	t0001	g0002	AMR	PUR	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01256	hp1	a0005	c0005	t0001	g0075	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01346	hp2	a0002	c0002	t0001	g0002	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01361	hp1	a0001	c0001	t0001	g0008	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01361	hp2	a0001	c0001	t0001	g0032	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01433	hp1	a0001	c0001	t0001	g0030	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01515	hp1	a0007	c0007	t0002	g0082	EUR	IBS	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01884	hp1	a0002	c0002	t0001	g0067	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01884	hp2	a0004	c0004	t0004	g0004	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01975	hp1	a0003	c0003	t0001	g0026	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01975	hp2	a0002	c0002	t0001	g0068	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01978	hp1	a0001	c0001	t0001	g0035	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01978	hp2	a0001	c0001	t0002	g0003	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02004	hp1	a0009	c0011	t0005	g0058	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02004	hp2	a0002	c0002	t0001	g0011	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02055	hp1	a0004	c0004	t0001	g0007	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02056	hp2	a0002	c0002	t0001	g0055	EAS	KHV	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02074	hp2	a0002	c0002	t0001	g0077	EAS	KHV	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02080	hp1	a0001	c0001	t0002	g0040	EAS	KHV	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02080	hp2	a0002	c0002	t0001	g0070	EAS	KHV	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02083	hp1	a0001	c0001	t0002	g0003	EAS	KHV	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02148	hp2	a0003	c0003	t0003	g0046	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02165	hp1	a0005	c0005	t0001	g0072	EAS	CDX	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02165	hp2	a0002	c0002	t0001	g0049	EAS	CDX	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02257	hp1	a0003	c0003	t0003	g0010	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02257	hp2	a0002	c0002	t0001	g0002	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02293	hp1	a0001	c0001	t0001	g0012	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02293	hp2	a0002	c0002	t0001	g0011	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02300	hp1	a0001	c0001	t0001	g0028	AMR	PEL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02572	hp1	a0002	c0002	t0001	g0006	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02615	hp1	a0002	c0002	t0001	g0019	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02615	hp2	a0005	c0005	t0008	g0056	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02622	hp1	a0001	c0001	t0001	g0083	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02622	hp2	a0004	c0004	t0001	g0073	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02683	hp1	a0001	c0001	t0002	g0036	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02683	hp2	a0002	c0002	t0001	g0066	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02723	hp1	a0001	c0001	t0001	g0001	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02723	hp2	a0005	c0005	t0007	g0018	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02809	hp1	a0003	c0003	t0003	g0010	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02809	hp2	a0010	c0010	t0001	g0053	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02886	hp1	a0003	c0003	t0003	g0022	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02886	hp2	a0004	c0004	t0004	g0004	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02895	hp1	a0004	c0004	t0004	g0004	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02965	hp1	a0003	c0003	t0001	g0091	AFR	ESN	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03098	hp2	a0002	c0002	t0001	g0063	AFR	MSL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03195	hp1	a0004	c0004	t0004	g0004	AFR	ESN	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03195	hp2	a0004	c0004	t0001	g0064	AFR	ESN	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03239	hp2	a0002	c0002	t0001	g0069	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03453	hp1	a0004	c0004	t0001	g0007	AFR	MSL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03453	hp2	a0003	c0003	t0003	g0044	AFR	MSL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03486	hp1	a0004	c0004	t0001	g0062	AFR	MSL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03486	hp2	a0002	c0002	t0001	g0006	AFR	MSL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03490	hp1	a0001	c0001	t0002	g0085	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03540	hp1	a0002	c0002	t0001	g0006	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03540	hp2	a0005	c0005	t0001	g0074	AFR	GWD	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03669	hp1	a0001	c0001	t0001	g0033	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03669	hp2	a0001	c0001	t0006	g0081	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03688	hp2	a0001	c0001	t0001	g0034	SAS	STU	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03710	hp1	a0002	c0002	t0001	g0076	SAS	PJL	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG03942	hp1	a0002	c0002	t0001	g0002	SAS	BEB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG04115	hp1	a0001	c0001	t0001	g0086	SAS	STU	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG04184	hp1	a0001	c0001	t0001	g0031	SAS	BEB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG04184	hp2	a0002	c0002	t0001	g0059	SAS	BEB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG04228	hp1	a0001	c0001	t0006	g0080	SAS	STU	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18747	hp2	a0003	c0003	t0001	g0025	EAS	CHB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18940	hp1	a0003	c0003	t0003	g0052	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18941	hp2	a0001	c0001	t0002	g0038	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18942	hp1	a0001	c0001	t0002	g0005	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18942	hp2	a0005	c0005	t0001	g0087	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18945	hp1	a0001	c0001	t0002	g0005	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18948	hp1	a0003	c0003	t0003	g0048	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18964	hp1	a0001	c0001	t0001	g0014	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18964	hp2	a0008	c0008	t0001	g0060	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18965	hp1	a0001	c0001	t0001	g0029	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18967	hp1	a0003	c0003	t0003	g0088	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18972	hp1	a0005	c0005	t0001	g0090	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18972	hp2	a0003	c0003	t0001	g0017	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18980	hp1	a0001	c0001	t0002	g0037	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18980	hp2	a0001	c0001	t0002	g0005	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18987	hp1	a0003	c0003	t0001	g0024	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18987	hp2	a0002	c0002	t0005	g0084	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA18995	hp1	a0001	c0001	t0001	g0021	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19003	hp1	a0001	c0001	t0001	g0027	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19003	hp2	a0001	c0001	t0002	g0041	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19043	hp1	a0003	c0003	t0001	g0092	AFR	LWK	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19057	hp1	a0003	c0003	t0003	g0047	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19057	hp2	a0001	c0001	t0001	g0012	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19062	hp1	a0005	c0005	t0001	g0089	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19074	hp1	a0001	c0001	t0001	g0009	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19074	hp2	a0002	c0002	t0001	g0050	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19080	hp1	a0003	c0003	t0001	g0042	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19080	hp2	a0003	c0003	t0003	g0051	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19083	hp1	a0001	c0001	t0001	g0079	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA19086	hp1	a0001	c0001	t0001	g0009	EAS	JPT	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01123	hp1	a0001	c0001	t0002	g0003	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG01123	hp2	a0001	c0001	t0002	g0003	AMR	CLM	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02109	hp1	a0003	c0003	t0003	g0043	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02109	hp2	a0006	c0006	t0001	g0078	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02486	hp1	a0003	c0003	t0001	g0023	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02559	hp1	a0002	c0002	t0001	g0065	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
HG02559	hp2	a0002	c0002	t0001	g0020	AFR	ACB	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA20300	hp1	a0005	c0009	t0001	g0071	AFR	USA	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
NA20300	hp2	a0002	c0002	t0001	g0054	AFR	USA	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824
homoSapiens_grch38	hp1	a0003	c0003	t0001	g0045	REF	REF	GAGE2A_chrX_49584496_49601824	GAGE2A	chrX	49584496	49601824

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:49590674	C C	CTAT CTAT	7	a0002 a0004 a0005 others(4): Show a0002 a0004 a0005 a0006 a0008 a0009 a0010	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	conservative_inframe_insertion	MODERATE	c.25_27dupTAT c.25_27dupTAT	p.Tyr9dup p.Tyr9dup	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/5	144/558	28/351	10/116	INFO_REALIGN_3_PRIME	chrX	49590674
chrX:49590678	C C	T T	7	a0002 a0004 a0005 others(4): Show a0002 a0004 a0005 a0006 a0008 a0009 a0010	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	missense_variant	MODERATE	c.28C>T c.28C>T	p.Arg10Trp p.Arg10Trp	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/5	144/558	28/351	10/116		chrX	49590678
chrX:49590702	G G	C C	7	a0002 a0004 a0005 others(4): Show a0002 a0004 a0005 a0006 a0008 a0009 a0010	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	missense_variant	MODERATE	c.52G>C c.52G>C	p.Glu18Gln p.Glu18Gln	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/5	168/558	52/351	18/116		chrX	49590702
chrX:49591228	C C	CA CA	1	a0008 a0008	1	NA18964.hp2 NA18964.hp2	frameshift_variant	HIGH	c.115dupA c.115dupA	p.Thr39fs p.Thr39fs	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	232/558	116/351	39/116	INFO_REALIGN_3_PRIME	chrX	49591228
chrX:49591260	C C	T T	5	a0002 a0004 a0006 others(2): Show a0002 a0004 a0006 a0008 a0009	46	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(43): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18964.hp2 NA18987.hp2 NA19074.hp2 NA20300.hp2	missense_variant	MODERATE	c.145C>T c.145C>T	p.Arg49Cys p.Arg49Cys	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	261/558	145/351	49/116		chrX	49591260
chrX:49591274	A A	AG AG	1	a0008 a0008	1	NA18964.hp2 NA18964.hp2	frameshift_variant	HIGH	c.160dupG c.160dupG	p.Ala54fs p.Ala54fs	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	277/558	161/351	54/116	INFO_REALIGN_3_PRIME	chrX	49591274
chrX:49591281	C C	CAGA CAGA	1	a0008 a0008	1	NA18964.hp2 NA18964.hp2	conservative_inframe_insertion	MODERATE	c.168_169insAAG c.168_169insAAG	p.Gln56_Glu57insLys p.Gln56_Glu57insLys	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	285/558	169/351	57/116	INFO_REALIGN_3_PRIME	chrX	49591281
chrX:49591284	G G	A A	1	a0002 a0002	32	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(29): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01346.hp2 HG01884.hp1 HG01975.hp2 HG02004.hp2 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02683.hp2 HG03098.hp2 HG03239.hp2 HG03486.hp2 HG03540.hp1 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18987.hp2 NA19074.hp2 NA20300.hp2	missense_variant	MODERATE	c.169G>A c.169G>A	p.Glu57Lys p.Glu57Lys	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	285/558	169/351	57/116		chrX	49591284
chrX:49591290	C C	G G	9	a0001 a0002 a0004 others(6): Show a0001 a0002 a0004 a0005 a0006 a0007 a0008 a0009 a0010	110	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(107): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18972.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19057.hp2 NA19062.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	missense_variant	MODERATE	c.175C>G c.175C>G	p.Gln59Glu p.Gln59Glu	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	291/558	175/351	59/116		chrX	49591290
chrX:49591291	AG AG	A A	1	a0009 a0009	1	HG02004.hp1 HG02004.hp1	frameshift_variant	HIGH	c.178delG c.178delG	p.Asp60fs p.Asp60fs	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	294/558	178/351	60/116	INFO_REALIGN_3_PRIME	chrX	49591291
chrX:49591295	T T	G G	1	a0009 a0009	1	HG02004.hp1 HG02004.hp1	missense_variant	MODERATE	c.180T>G c.180T>G	p.Asp60Glu p.Asp60Glu	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	296/558	180/351	60/116		chrX	49591295
chrX:49591299	G G	GA GA	1	a0008 a0008	1	NA18964.hp2 NA18964.hp2	frameshift_variant	HIGH	c.184_185insA c.184_185insA	p.Gly62fs p.Gly62fs	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	301/558	185/351	62/116		chrX	49591299
chrX:49591311	G G	GGT GGT	1	a0008 a0008	1	NA18964.hp2 NA18964.hp2	frameshift_variant	HIGH	c.197_198dupGT c.197_198dupGT	p.Gln67fs p.Gln67fs	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/5	315/558	199/351	67/116	INFO_REALIGN_3_PRIME	chrX	49591311
chrX:49594135	C C	G G	2	a0007 a0010 a0007 a0010	2	HG01515.hp1 HG02809.hp2 HG01515.hp1 HG02809.hp2	missense_variant	MODERATE	c.220C>G c.220C>G	p.His74Asp p.His74Asp	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/5	336/558	220/351	74/116		chrX	49594135
chrX:49594150	G G	C C	1	a0006 a0006	2	HG00741.hp1 HG02109.hp2 HG00741.hp1 HG02109.hp2	missense_variant	MODERATE	c.235G>C c.235G>C	p.Gly79Arg p.Gly79Arg	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/5	351/558	235/351	79/116		chrX	49594150

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:49590692	A A	G G	8	a0002c0002 a0004c0004 a0005c0005 others(5): Show a0002c0002 a0004c0004 a0005c0005 a0005c0009 a0006c0006 a0008c0008 a0009c0011 a0010c0010	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	synonymous_variant	LOW	c.42A>G c.42A>G	p.Arg14Arg p.Arg14Arg	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/5	158/558	42/351	14/116	chrX	49590692
chrX:49590698	C C	T T	8	a0002c0002 a0004c0004 a0005c0005 others(5): Show a0002c0002 a0004c0004 a0005c0005 a0005c0009 a0006c0006 a0008c0008 a0009c0011 a0010c0010	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	synonymous_variant	LOW	c.48C>T c.48C>T	p.Tyr16Tyr p.Tyr16Tyr	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/5	164/558	48/351	16/116	chrX	49590698
chrX:49594209	G G	A A	1	a0005c0009 a0005c0009	1	NA20300.hp1 NA20300.hp1	synonymous_variant	LOW	c.294G>A c.294G>A	p.Pro98Pro p.Pro98Pro	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/5	410/558	294/351	98/116	chrX	49594209

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:49589497	T T	C C	1	a0003c0003t0003 a0003c0003t0003	11	HG02109.hp1 HG02148.hp2 HG02257.hp1 others(8): Show HG02109.hp1 HG02148.hp2 HG02257.hp1 HG02809.hp1 HG02886.hp1 HG03453.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA19057.hp1 NA19080.hp2	5_prime_UTR_variant	MODIFIER	c.-115T>C c.-115T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/5	1154		chrX	49589497
chrX:49589506	C C	CG CG	1	a0005c0005t0008 a0005c0005t0008	1	HG02615.hp2 HG02615.hp2	5_prime_UTR_variant	MODIFIER	c.-104dupG c.-104dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/5	1142	INFO_REALIGN_3_PRIME	chrX	49589506
chrX:49589508	G G	GC GC	2	a0002c0002t0005 a0009c0011t0005 a0002c0002t0005 a0009c0011t0005	2	HG02004.hp1 NA18987.hp2 HG02004.hp1 NA18987.hp2	5_prime_UTR_variant	MODIFIER	c.-100dupC c.-100dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/5	1138	INFO_REALIGN_3_PRIME	chrX	49589508
chrX:49589515	C C	G G	1	a0005c0005t0007 a0005c0005t0007	1	HG02723.hp2 HG02723.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-97C>G c.-97C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/5			chrX	49589515
chrX:49589595	A A	T T	1	a0001c0001t0006 a0001c0001t0006	2	HG03669.hp2 HG04228.hp1 HG03669.hp2 HG04228.hp1	5_prime_UTR_variant	MODIFIER	c.-17A>T c.-17A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/5	1056		chrX	49589595
chrX:49596740	A A	G G	3	a0001c0001t0002 a0001c0001t0006 a0007c0007t0002 a0001c0001t0002 a0001c0001t0006 a0007c0007t0002	18	HG00423.hp1 HG00438.hp1 HG01123.hp1 others(15): Show HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01515.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02683.hp1 HG03490.hp1 HG03669.hp2 HG04228.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18980.hp1 NA18980.hp2 NA19003.hp2	3_prime_UTR_variant	MODIFIER	c.7A>G c.7A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	5/5	7		chrX	49596740
chrX:49596815	CTT CTT	C C	1	a0004c0004t0004 a0004c0004t0004	4	HG01884.hp2 HG02886.hp2 HG02895.hp1 others(1): Show HG01884.hp2 HG02886.hp2 HG02895.hp1 HG03195.hp1	3_prime_UTR_variant	MODIFIER	c.83_84delTT c.83_84delTT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	5/5	83		chrX	49596815

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:49589624	T T	G G	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.-9+21T>G c.-9+21T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589624
chrX:49589624	TC TC	T T	1	a0002c0002t0001g0094 a0002c0002t0001g0094	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.-9+24delC c.-9+24delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589624
chrX:49589627	CG CG	C C	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-9+29delG c.-9+29delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589627
chrX:49589642	G G	C C	1	a0002c0002t0001g0015 a0002c0002t0001g0015	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.-9+39G>C c.-9+39G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589642
chrX:49589656	A A	AG AG	1	a0004c0004t0001g0093 a0004c0004t0001g0093	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.-9+56dupG c.-9+56dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589656
chrX:49589667	T T	TG TG	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.-9+67dupG c.-9+67dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589667
chrX:49589677	G G	A A	1	a0003c0003t0001g0017 a0003c0003t0001g0017	1	NA18972.hp2 NA18972.hp2	intron_variant	MODIFIER	c.-9+74G>A c.-9+74G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589677
chrX:49589704	C C	T T	2	a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0001g0091 a0003c0003t0001g0092	2	HG02965.hp1 NA19043.hp1 HG02965.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-9+101C>T c.-9+101C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589704
chrX:49589710	A A	AG AG	1	a0005c0005t0001g0090 a0005c0005t0001g0090	1	NA18972.hp1 NA18972.hp1	intron_variant	MODIFIER	c.-9+108dupG c.-9+108dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589710
chrX:49589715	G G	A A	1	a0004c0004t0001g0007 a0004c0004t0001g0007	2	HG02055.hp1 HG03453.hp1 HG02055.hp1 HG03453.hp1	intron_variant	MODIFIER	c.-9+112G>A c.-9+112G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589715
chrX:49589738	C C	G G	2	a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0001g0091 a0003c0003t0001g0092	2	HG02965.hp1 NA19043.hp1 HG02965.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-9+135C>G c.-9+135C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589738
chrX:49589760	G G	A A	1	a0005c0005t0007g0018 a0005c0005t0007g0018	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.-9+157G>A c.-9+157G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589760
chrX:49589829	G G	T T	3	a0001c0001t0001g0012 a0003c0003t0003g0088 a0005c0005t0001g0089 a0001c0001t0001g0012 a0003c0003t0003g0088 a0005c0005t0001g0089	4	HG02293.hp1 NA18967.hp1 NA19057.hp2 others(1): Show HG02293.hp1 NA18967.hp1 NA19057.hp2 NA19062.hp1	intron_variant	MODIFIER	c.-9+226G>T c.-9+226G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589829
chrX:49589842	C C	CG CG	1	a0002c0002t0001g0019 a0002c0002t0001g0019	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.-9+243dupG c.-9+243dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589842
chrX:49589857	TG TG	T T	1	a0002c0002t0001g0020 a0002c0002t0001g0020	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-9+260delG c.-9+260delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589857
chrX:49589871	TC TC	T T	1	a0005c0005t0001g0087 a0005c0005t0001g0087	1	NA18942.hp2 NA18942.hp2	intron_variant	MODIFIER	c.-9+271delC c.-9+271delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589871
chrX:49589892	G G	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-9+289G>A c.-9+289G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589892
chrX:49589894	C C	T T	3	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085	3	HG03490.hp1 HG04115.hp1 NA18995.hp1 HG03490.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-9+291C>T c.-9+291C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589894
chrX:49589900	A A	AG AG	1	a0002c0002t0005g0084 a0002c0002t0005g0084	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.-9+300dupG c.-9+300dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589900
chrX:49589926	C C	T T	8	a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 others(5): Show a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082	8	HG00639.hp1 HG01515.hp1 HG02622.hp1 others(5): Show HG00639.hp1 HG01515.hp1 HG02622.hp1 HG03490.hp1 HG03669.hp2 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-9+323C>T c.-9+323C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589926
chrX:49589929	C C	CG CG	5	a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 others(2): Show a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0005c0005t0001g0090 a0006c0006t0001g0078	5	HG01167.hp1 HG02074.hp2 HG02109.hp2 others(2): Show HG01167.hp1 HG02074.hp2 HG02109.hp2 HG03710.hp1 NA18972.hp1	intron_variant	MODIFIER	c.-9+331dupG c.-9+331dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589929
chrX:49589929	C C	CT CT	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-9+326_-9+327insT c.-9+326_-9+327insT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589929
chrX:49589930	G G	C C	1	a0003c0003t0001g0091 a0003c0003t0001g0091	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.-9+327G>C c.-9+327G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589930
chrX:49589941	A A	G G	50	a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 others(47): Show a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	62	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(59): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04228.hp1 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA18995.hp1 NA19062.hp1 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-9+338A>G c.-9+338A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589941
chrX:49589953	AG AG	A A	1	a0002c0002t0005g0084 a0002c0002t0005g0084	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.-9+354delG c.-9+354delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589953
chrX:49589961	G G	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.-9+358G>A c.-9+358G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589961
chrX:49589978	G G	C C	42	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(39): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	54	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(51): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-9+375G>C c.-9+375G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589978
chrX:49589985	G G	T T	1	a0005c0005t0001g0075 a0005c0005t0001g0075	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-9+382G>T c.-9+382G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589985
chrX:49589989	G G	GC GC	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-9+395dupC c.-9+395dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589989
chrX:49589989	GC GC	G G	8	a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 others(5): Show a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082	8	HG00639.hp1 HG01515.hp1 HG02622.hp1 others(5): Show HG00639.hp1 HG01515.hp1 HG02622.hp1 HG03490.hp1 HG03669.hp2 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-9+395delC c.-9+395delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49589989
chrX:49589990	C C	CG CG	6	a0002c0002t0001g0054 a0002c0002t0001g0055 a0005c0005t0001g0075 others(3): Show a0002c0002t0001g0054 a0002c0002t0001g0055 a0005c0005t0001g0075 a0005c0005t0001g0089 a0005c0005t0007g0018 a0010c0010t0001g0053	6	HG01256.hp1 HG02056.hp2 HG02723.hp2 others(3): Show HG01256.hp1 HG02056.hp2 HG02723.hp2 HG02809.hp2 NA19062.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-9+387_-9+388insG c.-9+387_-9+388insG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589990
chrX:49589991	C C	G G	36	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(33): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0087 a0005c0005t0001g0090 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058	48	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(45): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-9+388C>G c.-9+388C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589991
chrX:49589997	C C	T T	38	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(35): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058	50	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(47): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-9+394C>T c.-9+394C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49589997
chrX:49590009	A A	AG AG	1	a0005c0005t0008g0056 a0005c0005t0008g0056	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.-9+407dupG c.-9+407dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590009
chrX:49590011	T T	C C	1	a0001c0001t0006g0080 a0001c0001t0006g0080	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-9+408T>C c.-9+408T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590011
chrX:49590012	G G	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-9+409G>T c.-9+409G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590012
chrX:49590013	C C	T T	8	a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 others(5): Show a0001c0001t0001g0013 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082	8	HG00639.hp1 HG01515.hp1 HG02622.hp1 others(5): Show HG00639.hp1 HG01515.hp1 HG02622.hp1 HG03490.hp1 HG03669.hp2 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-9+410C>T c.-9+410C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590013
chrX:49590019	G G	GC GC	1	a0002c0002t0001g0015 a0002c0002t0001g0015	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.-9+419dupC c.-9+419dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590019
chrX:49590020	C C	CT CT	1	a0003c0003t0003g0052 a0003c0003t0003g0052	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.-9+417_-9+418insT c.-9+417_-9+418insT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590020
chrX:49590089	C C	T T	1	a0003c0003t0003g0051 a0003c0003t0003g0051	1	NA19080.hp2 NA19080.hp2	intron_variant	MODIFIER	c.-9+486C>T c.-9+486C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590089
chrX:49590121	A A	AG AG	3	a0002c0002t0001g0057 a0005c0005t0001g0090 a0009c0011t0005g0058 a0002c0002t0001g0057 a0005c0005t0001g0090 a0009c0011t0005g0058	3	HG00741.hp2 HG02004.hp1 NA18972.hp1 HG00741.hp2 HG02004.hp1 NA18972.hp1	intron_variant	MODIFIER	c.-8-515dupG c.-8-515dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590121
chrX:49590123	G G	T T	9	a0002c0002t0001g0020 a0004c0004t0001g0007 a0004c0004t0001g0073 others(6): Show a0002c0002t0001g0020 a0004c0004t0001g0007 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0009t0001g0071 a0006c0006t0001g0078	13	HG00639.hp2 HG01884.hp2 HG02055.hp1 others(10): Show HG00639.hp2 HG01884.hp2 HG02055.hp1 HG02109.hp2 HG02165.hp1 HG02559.hp2 HG02622.hp2 HG02886.hp2 HG02895.hp1 HG03195.hp1 HG03453.hp1 HG03540.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-9+520G>T c.-9+520G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590123
chrX:49590142	G G	C C	2	a0005c0005t0001g0075 a0005c0005t0007g0018 a0005c0005t0001g0075 a0005c0005t0007g0018	2	HG01256.hp1 HG02723.hp2 HG01256.hp1 HG02723.hp2	intron_variant	MODIFIER	c.-8-501G>C c.-8-501G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590142
chrX:49590155	GC GC	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.-8-485delC c.-8-485delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590155
chrX:49590160	A A	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG02293.hp1 NA19057.hp2 HG02293.hp1 NA19057.hp2	intron_variant	MODIFIER	c.-8-483A>C c.-8-483A>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590160
chrX:49590168	AT AT	A A	2	a0002c0002t0001g0059 a0002c0002t0001g0076 a0002c0002t0001g0059 a0002c0002t0001g0076	2	HG03710.hp1 HG04184.hp2 HG03710.hp1 HG04184.hp2	intron_variant	MODIFIER	c.-8-474delT c.-8-474delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590168
chrX:49590193	G G	GT GT	1	a0009c0011t0005g0058 a0009c0011t0005g0058	1	HG02004.hp1 HG02004.hp1	intron_variant	MODIFIER	c.-8-446dupT c.-8-446dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590193
chrX:49590198	C C	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-8-445C>T c.-8-445C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590198
chrX:49590200	TG TG	T T	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.-8-439delG c.-8-439delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590200
chrX:49590224	AC AC	A A	1	a0002c0002t0005g0084 a0002c0002t0005g0084	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.-8-417delC c.-8-417delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590224
chrX:49590250	C C	T T	1	a0005c0005t0001g0074 a0005c0005t0001g0074	1	HG03540.hp2 HG03540.hp2	intron_variant	MODIFIER	c.-8-393C>T c.-8-393C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590250
chrX:49590277	G G	T T	41	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(38): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058	53	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(50): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-8-366G>T c.-8-366G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590277
chrX:49590288	T T	TG TG	1	a0005c0005t0001g0089 a0005c0005t0001g0089	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.-8-351dupG c.-8-351dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590288
chrX:49590288	TG TG	T T	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.-8-351delG c.-8-351delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590288
chrX:49590323	A A	AG AG	1	a0002c0002t0001g0015 a0002c0002t0001g0015	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.-8-318dupG c.-8-318dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590323
chrX:49590366	G G	GCTTGC GCTTGC	1	a0005c0005t0008g0056 a0005c0005t0008g0056	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.-8-276_-8-275insTT others(3): Show c.-8-276_-8-275insTTGCC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590366
chrX:49590381	C C	T T	1	a0004c0004t0001g0073 a0004c0004t0001g0073	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.-8-262C>T c.-8-262C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590381
chrX:49590390	G G	GT GT	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.-8-252dupT c.-8-252dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590390
chrX:49590426	C C	CT CT	1	a0005c0005t0008g0056 a0005c0005t0008g0056	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.-8-213dupT c.-8-213dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590426
chrX:49590457	GC GC	G G	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-8-184delC c.-8-184delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590457
chrX:49590522	TG TG	T T	1	a0002c0002t0005g0084 a0002c0002t0005g0084	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.-8-118delG c.-8-118delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590522
chrX:49590532	C C	T T	44	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(41): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-8-111C>T c.-8-111C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590532
chrX:49590552	T T	TA TA	1	a0005c0005t0001g0090 a0005c0005t0001g0090	1	NA18972.hp1 NA18972.hp1	intron_variant	MODIFIER	c.-8-87dupA c.-8-87dupA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590552
chrX:49590563	GT GT	G G	1	a0002c0002t0001g0050 a0002c0002t0001g0050	1	NA19074.hp2 NA19074.hp2	intron_variant	MODIFIER	c.-8-77delT c.-8-77delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590563
chrX:49590566	T T	A A	45	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(42): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0003c0003t0001g0091 a0003c0003t0001g0092 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	57	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(54): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19043.hp1 NA19062.hp1 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-8-77T>A c.-8-77T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590566
chrX:49590576	G G	C C	84	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(81): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	119	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(116): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18972.hp1 NA18972.hp2 NA18980.hp1 NA18980.hp2 NA18987.hp1 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19043.hp1 NA19057.hp2 NA19062.hp1 NA19074.hp1 NA19074.hp2 NA19080.hp1 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-8-67G>C c.-8-67G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590576
chrX:49590604	G G	C C	43	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(40): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058	55	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(52): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-8-39G>C c.-8-39G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4		chrX	49590604
chrX:49590617	TC TC	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-8-23delC c.-8-23delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590617
chrX:49590628	GT GT	G G	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-8-13delT c.-8-13delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590628
chrX:49590632	T T	TC TC	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-8-10dupC c.-8-10dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	1/4	INFO_REALIGN_3_PRIME	chrX	49590632
chrX:49590746	G G	C C	1	a0003c0003t0003g0043 a0003c0003t0003g0043	1	HG02109.hp1 HG02109.hp1	intron_variant	MODIFIER	c.81+15G>C c.81+15G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590746
chrX:49590757	G G	GT GT	1	a0003c0003t0001g0042 a0003c0003t0001g0042	1	NA19080.hp1 NA19080.hp1	intron_variant	MODIFIER	c.81+30dupT c.81+30dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49590757
chrX:49590794	T T	C C	44	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(41): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.81+63T>C c.81+63T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590794
chrX:49590809	G G	GA GA	1	a0009c0011t0005g0058 a0009c0011t0005g0058	1	HG02004.hp1 HG02004.hp1	intron_variant	MODIFIER	c.81+81dupA c.81+81dupA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49590809
chrX:49590826	C C	G G	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.81+95C>G c.81+95C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590826
chrX:49590845	T T	G G	1	a0003c0003t0003g0044 a0003c0003t0003g0044	1	HG03453.hp2 HG03453.hp2	intron_variant	MODIFIER	c.81+114T>G c.81+114T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590845
chrX:49590848	G G	T T	2	a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0001g0091 a0003c0003t0001g0092	2	HG02965.hp1 NA19043.hp1 HG02965.hp1 NA19043.hp1	intron_variant	MODIFIER	c.81+117G>T c.81+117G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590848
chrX:49590885	A A	AT AT	2	a0007c0007t0002g0082 a0010c0010t0001g0053 a0007c0007t0002g0082 a0010c0010t0001g0053	2	HG01515.hp1 HG02809.hp2 HG01515.hp1 HG02809.hp2	intron_variant	MODIFIER	c.81+164dupT c.81+164dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49590885
chrX:49590885	AT AT	A A	1	a0002c0002t0005g0084 a0002c0002t0005g0084	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.81+164delT c.81+164delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49590885
chrX:49590936	C C	A A	2	a0005c0005t0007g0018 a0006c0006t0001g0061 a0005c0005t0007g0018 a0006c0006t0001g0061	2	HG00741.hp1 HG02723.hp2 HG00741.hp1 HG02723.hp2	intron_variant	MODIFIER	c.81+205C>A c.81+205C>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590936
chrX:49590936	C C	T T	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.81+205C>T c.81+205C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590936
chrX:49590981	A A	G G	24	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(21): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0010c0010t0001g0053	46	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(43): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.82-216A>G c.82-216A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590981
chrX:49590992	G G	GC GC	1	a0002c0002t0001g0059 a0002c0002t0001g0059	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.82-203dupC c.82-203dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49590992
chrX:49590995	T T	C C	44	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(41): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	56	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(53): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp2 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02109.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA18987.hp2 NA19062.hp1 NA19074.hp2 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.82-202T>C c.82-202T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49590995
chrX:49590998	AAAGTCCT others(42): Show AAAGTCCTCGTGCGTCACTTTTCTCACAGTATCCTCCCTGTGGGTGGAGT	A A	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.82-196_82-148delGT others(47): Show c.82-196_82-148delGTCCTCGTGCGTCACTTTTCTCACAGTATCCT CCCTGTGGGTGGAGTAA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49590998
chrX:49591026	G G	T T	4	a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 others(1): Show a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042	4	HG01975.hp1 NA18747.hp2 NA18987.hp1 others(1): Show HG01975.hp1 NA18747.hp2 NA18987.hp1 NA19080.hp1	intron_variant	MODIFIER	c.82-171G>T c.82-171G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49591026
chrX:49591029	T T	A A	73	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(70): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0009c0011t0005g0058 a0010c0010t0001g0053	107	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(104): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18972.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19062.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.82-168T>A c.82-168T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49591029
chrX:49591042	TG TG	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.82-153delG c.82-153delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49591042
chrX:49591063	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.82-133dupG c.82-133dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49591063
chrX:49591075	T T	TG TG	1	a0005c0005t0001g0089 a0005c0005t0001g0089	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.82-120dupG c.82-120dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49591075
chrX:49591090	AG AG	A A	1	a0005c0005t0008g0056 a0005c0005t0008g0056	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.82-105delG c.82-105delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4	INFO_REALIGN_3_PRIME	chrX	49591090
chrX:49591101	G G	T T	1	a0005c0005t0001g0075 a0005c0005t0001g0075	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.82-96G>T c.82-96G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49591101
chrX:49591104	C C	A A	1	a0005c0005t0001g0075 a0005c0005t0001g0075	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.82-93C>A c.82-93C>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49591104
chrX:49591168	T T	C C	2	a0005c0005t0001g0072 a0005c0009t0001g0071 a0005c0005t0001g0072 a0005c0009t0001g0071	2	HG02165.hp1 NA20300.hp1 HG02165.hp1 NA20300.hp1	intron_variant	MODIFIER	c.82-29T>C c.82-29T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	2/4		chrX	49591168
chrX:49591316	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	splice_donor_variant&intron_variant	HIGH	c.202+1dupG c.202+1dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591316
chrX:49591355	C C	CGT CGT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+49_202+50dupGT c.202+49_202+50dupGT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591355
chrX:49591369	CGT CGT	C C	63	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(60): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0007g0018 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0009c0011t0005g0058 a0010c0010t0001g0053	97	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(94): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.202+66_202+67delTG c.202+66_202+67delTG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591369
chrX:49591380	G G	GCA GCA	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.202+63_202+64insCA c.202+63_202+64insCA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591380
chrX:49591385	C C	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.202+68C>T c.202+68C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591385
chrX:49591386	A A	G G	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.202+69A>G c.202+69A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591386
chrX:49591387	C C	CGT CGT	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG02293.hp1 NA19057.hp2 HG02293.hp1 NA19057.hp2	intron_variant	MODIFIER	c.202+87_202+88dupGT c.202+87_202+88dupGT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591387
chrX:49591387	C C	CGTGT CGTGT	4	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0007c0007t0002g0082	4	HG01515.hp1 HG03490.hp1 HG04115.hp1 others(1): Show HG01515.hp1 HG03490.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+85_202+88dupGT others(2): Show c.202+85_202+88dupGTGT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591387
chrX:49591387	C C	CGTGTGTG others(1): Show CGTGTGTGT	1	a0001c0001t0006g0080 a0001c0001t0006g0080	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.202+81_202+88dupGT others(6): Show c.202+81_202+88dupGTGTGTGT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591387
chrX:49591387	C C	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.202+70C>T c.202+70C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591387
chrX:49591387	CGT CGT	C C	4	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 others(1): Show a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0008g0056	4	HG02615.hp2 NA18942.hp2 NA18972.hp1 others(1): Show HG02615.hp2 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+87_202+88delGT c.202+87_202+88delGT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591387
chrX:49591387	CGTGTGT CGTGTGT	C C	64	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(61): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0007g0018 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	98	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(95): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.202+83_202+88delGT others(4): Show c.202+83_202+88delGTGTGT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591387
chrX:49591430	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+115dupG c.202+115dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591430
chrX:49591469	G G	C C	77	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(74): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0003c0003t0001g0091 a0003c0003t0001g0092 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	112	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(109): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18972.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19043.hp1 NA19057.hp2 NA19062.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.202+152G>C c.202+152G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591469
chrX:49591496	T T	C C	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+179T>C c.202+179T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591496
chrX:49591521	C C	G G	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+204C>G c.202+204C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591521
chrX:49591523	C C	G G	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+206C>G c.202+206C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591523
chrX:49591528	A A	G G	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+211A>G c.202+211A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591528
chrX:49591535	T T	A A	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+218T>A c.202+218T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591535
chrX:49591572	G G	A A	43	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(40): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0009t0001g0071 a0006c0006t0001g0061 a0007c0007t0002g0082 a0010c0010t0001g0053	69	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(66): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG00741.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01256.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp2 HG01978.hp1 HG01978.hp2 HG02055.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02300.hp1 HG02622.hp1 HG02683.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03195.hp1 HG03239.hp1 HG03453.hp1 HG03486.hp1 HG03490.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04115.hp1 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18972.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19062.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.202+255G>A c.202+255G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591572
chrX:49591627	C C	T T	65	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(62): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	99	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(96): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.202+310C>T c.202+310C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591627
chrX:49591652	A A	G G	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+335A>G c.202+335A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591652
chrX:49591661	T T	G G	66	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(63): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	100	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(97): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02300.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19074.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.202+344T>G c.202+344T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591661
chrX:49591667	A A	C C	4	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0006g0080 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0006g0080 a0007c0007t0002g0082	4	HG01515.hp1 HG04115.hp1 HG04228.hp1 others(1): Show HG01515.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+350A>C c.202+350A>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591667
chrX:49591681	C C	G G	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+364C>G c.202+364C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591681
chrX:49591699	CA CA	C C	2	a0002c0002t0001g0050 a0002c0002t0001g0094 a0002c0002t0001g0050 a0002c0002t0001g0094	2	HG01167.hp1 NA19074.hp2 HG01167.hp1 NA19074.hp2	intron_variant	MODIFIER	c.202+386delA c.202+386delA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591699
chrX:49591705	G G	A A	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+388G>A c.202+388G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591705
chrX:49591706	CT CT	C C	6	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(3): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0007c0007t0002g0082	6	HG01515.hp1 HG02622.hp1 HG03490.hp1 others(3): Show HG01515.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+392delT c.202+392delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591706
chrX:49591724	T T	TAGTACTG others(23): Show TAGTACTGACCCAAGAATAGACCCAGTTCAG	91	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(88): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0008c0008t0001g0060 a0009c0011t0005g0058 a0010c0010t0001g0053	126	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(123): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18967.hp1 NA18972.hp1 NA18972.hp2 NA18980.hp1 NA18980.hp2 NA18987.hp1 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19062.hp1 NA19074.hp1 NA19074.hp2 NA19080.hp1 NA19080.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.202+409_202+410ins others(30): Show c.202+409_202+410insTACTGACCCAAGAATAGACCCAGTTCAGAG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591724
chrX:49591755	G G	A A	1	a0006c0006t0001g0061 a0006c0006t0001g0061	1	HG00741.hp1 HG00741.hp1	intron_variant	MODIFIER	c.202+438G>A c.202+438G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591755
chrX:49591783	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.202+466T>C c.202+466T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591783
chrX:49591858	A A	AT AT	1	a0005c0005t0001g0089 a0005c0005t0001g0089	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+546dupT c.202+546dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591858
chrX:49591866	C C	T T	3	a0003c0003t0001g0026 a0003c0003t0001g0042 a0005c0005t0001g0075 a0003c0003t0001g0026 a0003c0003t0001g0042 a0005c0005t0001g0075	3	HG01256.hp1 HG01975.hp1 NA19080.hp1 HG01256.hp1 HG01975.hp1 NA19080.hp1	intron_variant	MODIFIER	c.202+549C>T c.202+549C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591866
chrX:49591930	A A	G G	2	a0003c0003t0003g0048 a0003c0003t0003g0052 a0003c0003t0003g0048 a0003c0003t0003g0052	2	NA18940.hp1 NA18948.hp1 NA18940.hp1 NA18948.hp1	intron_variant	MODIFIER	c.202+613A>G c.202+613A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591930
chrX:49591937	C C	T T	1	a0002c0002t0001g0050 a0002c0002t0001g0050	1	NA19074.hp2 NA19074.hp2	intron_variant	MODIFIER	c.202+620C>T c.202+620C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591937
chrX:49591950	T T	TA TA	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+635dupA c.202+635dupA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591950
chrX:49591960	C C	G G	62	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(59): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0020 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0007g0018 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0009c0011t0005g0058 a0010c0010t0001g0053	89	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(86): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01256.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp2 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02055.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03195.hp1 HG03239.hp1 HG03453.hp1 HG03486.hp1 HG03490.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04115.hp1 HG04184.hp1 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18967.hp1 NA18972.hp2 NA18980.hp1 NA18980.hp2 NA18987.hp1 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19074.hp1 NA19080.hp1 NA19080.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.202+643C>G c.202+643C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49591960
chrX:49591970	GT GT	G G	1	a0005c0005t0001g0090 a0005c0005t0001g0090	1	NA18972.hp1 NA18972.hp1	intron_variant	MODIFIER	c.202+657delT c.202+657delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49591970
chrX:49592077	G G	GC GC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+763dupC c.202+763dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592077
chrX:49592100	G G	A A	4	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080	4	HG03490.hp1 HG04115.hp1 HG04228.hp1 others(1): Show HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+783G>A c.202+783G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592100
chrX:49592127	C C	CA CA	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+813dupA c.202+813dupA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592127
chrX:49592140	A A	AT AT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+826dupT c.202+826dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592140
chrX:49592148	C C	CT CT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+834dupT c.202+834dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592148
chrX:49592174	G G	C C	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+857G>C c.202+857G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592174
chrX:49592242	C C	CA CA	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+925_202+926ins others(1): Show c.202+925_202+926insA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592242
chrX:49592246	A A	G G	14	a0001c0001t0001g0013 a0001c0001t0001g0035 a0001c0001t0001g0079 others(11): Show a0001c0001t0001g0013 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	20	HG00423.hp1 HG00438.hp1 HG00639.hp1 others(17): Show HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02683.hp1 HG02809.hp2 HG03669.hp2 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18980.hp1 NA18980.hp2 NA19003.hp2 NA19083.hp1	intron_variant	MODIFIER	c.202+929A>G c.202+929A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592246
chrX:49592255	T T	TG TG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+941dupG c.202+941dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592255
chrX:49592267	C C	G G	1	a0001c0001t0002g0041 a0001c0001t0002g0041	1	NA19003.hp2 NA19003.hp2	intron_variant	MODIFIER	c.202+950C>G c.202+950C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592267
chrX:49592274	A A	AT AT	14	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 others(11): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	15	HG01975.hp1 HG02293.hp1 HG02486.hp1 others(12): Show HG01975.hp1 HG02293.hp1 HG02486.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18942.hp2 NA18972.hp1 NA18972.hp2 NA18995.hp1 NA19057.hp2 NA19062.hp1 NA19080.hp1	intron_variant	MODIFIER	c.202+960dupT c.202+960dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592274
chrX:49592284	T T	TC TC	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.202+969dupC c.202+969dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592284
chrX:49592328	G G	A A	11	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 others(8): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042	12	HG01975.hp1 HG02293.hp1 HG02486.hp1 others(9): Show HG01975.hp1 HG02293.hp1 HG02486.hp1 HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18972.hp2 NA18995.hp1 NA19057.hp2 NA19080.hp1	intron_variant	MODIFIER	c.202+1011G>A c.202+1011G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592328
chrX:49592348	A A	AC AC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+1034dupC c.202+1034dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592348
chrX:49592382	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG02293.hp1 NA19057.hp2 HG02293.hp1 NA19057.hp2	intron_variant	MODIFIER	c.202+1065G>A c.202+1065G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592382
chrX:49592407	C C	A A	2	a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0001g0091 a0003c0003t0001g0092	2	HG02965.hp1 NA19043.hp1 HG02965.hp1 NA19043.hp1	intron_variant	MODIFIER	c.202+1090C>A c.202+1090C>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592407
chrX:49592436	GT GT	G G	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.202+1122delT c.202+1122delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592436
chrX:49592467	G G	T T	5	a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 others(2): Show a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080	5	HG02622.hp1 HG03490.hp1 HG04115.hp1 others(2): Show HG02622.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.202+1150G>T c.202+1150G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592467
chrX:49592555	GC GC	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.202+1241delC c.202+1241delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592555
chrX:49592586	T T	C C	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+1269T>C c.202+1269T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592586
chrX:49592606	A A	G G	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+1289A>G c.202+1289A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592606
chrX:49592616	TAAAC TAAAC	T T	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.202+1301_202+1304d others(6): Show c.202+1301_202+1304delAACA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592616
chrX:49592621	A A	C C	1	a0001c0001t0006g0080 a0001c0001t0006g0080	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.202+1304A>C c.202+1304A>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592621
chrX:49592658	G G	A A	2	a0001c0001t0001g0008 a0001c0001t0001g0028 a0001c0001t0001g0008 a0001c0001t0001g0028	3	HG01175.hp1 HG01361.hp1 HG02300.hp1 HG01175.hp1 HG01361.hp1 HG02300.hp1	intron_variant	MODIFIER	c.202+1341G>A c.202+1341G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592658
chrX:49592662	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.202+1347dupG c.202+1347dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592662
chrX:49592756	T T	TG TG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-1360dupG c.203-1360dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592756
chrX:49592783	T T	G G	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-1335T>G c.203-1335T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592783
chrX:49592800	T T	TC TC	1	a0004c0004t0001g0093 a0004c0004t0001g0093	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.203-1316dupC c.203-1316dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592800
chrX:49592810	C C	T T	1	a0005c0005t0001g0074 a0005c0005t0001g0074	1	HG03540.hp2 HG03540.hp2	intron_variant	MODIFIER	c.203-1308C>T c.203-1308C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592810
chrX:49592831	A A	G G	2	a0002c0002t0001g0070 a0002c0002t0005g0084 a0002c0002t0001g0070 a0002c0002t0005g0084	2	HG02080.hp2 NA18987.hp2 HG02080.hp2 NA18987.hp2	intron_variant	MODIFIER	c.203-1287A>G c.203-1287A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592831
chrX:49592851	A A	C C	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-1267A>C c.203-1267A>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592851
chrX:49592869	A A	T T	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-1249A>T c.203-1249A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592869
chrX:49592874	A A	G G	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-1244A>G c.203-1244A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592874
chrX:49592879	C C	T T	13	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 others(10): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092	14	HG01975.hp1 HG02293.hp1 HG02486.hp1 others(11): Show HG01975.hp1 HG02293.hp1 HG02486.hp1 HG02622.hp1 HG02965.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18972.hp2 NA18995.hp1 NA19043.hp1 NA19057.hp2 NA19080.hp1	intron_variant	MODIFIER	c.203-1239C>T c.203-1239C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49592879
chrX:49592883	G G	GA GA	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-1231dupA c.203-1231dupA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49592883
chrX:49593008	T T	TCA TCA	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.203-1087_203-1086d others(4): Show c.203-1087_203-1086dupCA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593008
chrX:49593008	T T	TCACA TCACA	2	a0001c0001t0006g0080 a0004c0004t0001g0007 a0001c0001t0006g0080 a0004c0004t0001g0007	3	HG02055.hp1 HG03453.hp1 HG04228.hp1 HG02055.hp1 HG03453.hp1 HG04228.hp1	intron_variant	MODIFIER	c.203-1089_203-1086d others(6): Show c.203-1089_203-1086dupCACA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593008
chrX:49593008	TCA TCA	T T	21	a0001c0001t0001g0012 a0002c0002t0001g0016 a0003c0003t0001g0017 others(18): Show a0001c0001t0001g0012 a0002c0002t0001g0016 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	22	HG01069.hp1 HG01975.hp1 HG02109.hp1 others(19): Show HG01069.hp1 HG01975.hp1 HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02486.hp1 HG02886.hp1 HG02965.hp1 NA18747.hp2 NA18940.hp1 NA18942.hp2 NA18948.hp1 NA18967.hp1 NA18972.hp1 NA18972.hp2 NA18987.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19062.hp1 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.203-1087_203-1086d others(4): Show c.203-1087_203-1086delCA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593008
chrX:49593008	TCACA TCACA	T T	1	a0007c0007t0002g0082 a0007c0007t0002g0082	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.203-1089_203-1086d others(6): Show c.203-1089_203-1086delCACA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593008
chrX:49593022	A A	T T	22	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 others(19): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0010c0010t0001g0053	43	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(40): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-1096A>T c.203-1096A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593022
chrX:49593061	G G	C C	29	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(26): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0007c0007t0002g0082 a0010c0010t0001g0053	51	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(48): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18972.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19062.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-1057G>C c.203-1057G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593061
chrX:49593070	C C	T T	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-1048C>T c.203-1048C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593070
chrX:49593087	G G	T T	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-1031G>T c.203-1031G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593087
chrX:49593097	C C	CT CT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-1018dupT c.203-1018dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593097
chrX:49593097	C C	T T	1	a0001c0001t0001g0034 a0001c0001t0001g0034	1	HG03688.hp2 HG03688.hp2	intron_variant	MODIFIER	c.203-1021C>T c.203-1021C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593097
chrX:49593120	G G	GT GT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-997dupT c.203-997dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593120
chrX:49593124	A A	T T	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-994A>T c.203-994A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593124
chrX:49593175	A A	T T	22	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 others(19): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	23	HG01975.hp1 HG02109.hp1 HG02148.hp2 others(20): Show HG01975.hp1 HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02486.hp1 HG02622.hp1 HG02886.hp1 HG02965.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18972.hp2 NA18987.hp1 NA18995.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.203-943A>T c.203-943A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593175
chrX:49593177	A A	C C	3	a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	3	NA18942.hp2 NA18972.hp1 NA19062.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-941A>C c.203-941A>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593177
chrX:49593177	A A	G G	22	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 others(19): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	23	HG01975.hp1 HG02109.hp1 HG02148.hp2 others(20): Show HG01975.hp1 HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02486.hp1 HG02622.hp1 HG02886.hp1 HG02965.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18972.hp2 NA18987.hp1 NA18995.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.203-941A>G c.203-941A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593177
chrX:49593213	AT AT	A A	1	a0005c0005t0001g0089 a0005c0005t0001g0089	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-902delT c.203-902delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593213
chrX:49593248	TC TC	T T	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.203-866delC c.203-866delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593248
chrX:49593270	C C	CT CT	2	a0001c0001t0001g0086 a0002c0002t0001g0059 a0001c0001t0001g0086 a0002c0002t0001g0059	2	HG04115.hp1 HG04184.hp2 HG04115.hp1 HG04184.hp2	intron_variant	MODIFIER	c.203-838dupT c.203-838dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593270
chrX:49593270	CT CT	C C	13	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 others(10): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0005c0009t0001g0071 a0010c0010t0001g0053	28	HG00099.hp1 HG00140.hp1 HG01346.hp1 others(25): Show HG00099.hp1 HG00140.hp1 HG01346.hp1 HG01361.hp2 HG01433.hp1 HG01978.hp1 HG02129.hp1 HG02148.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-838delT c.203-838delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593270
chrX:49593270	CTTT CTTT	C C	1	a0004c0004t0001g0062 a0004c0004t0001g0062	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.203-840_203-838del others(3): Show c.203-840_203-838delTTT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593270
chrX:49593317	G G	T T	22	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 others(19): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	23	HG01975.hp1 HG02109.hp1 HG02148.hp2 others(20): Show HG01975.hp1 HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02486.hp1 HG02622.hp1 HG02886.hp1 HG02965.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18972.hp2 NA18987.hp1 NA18995.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.203-801G>T c.203-801G>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593317
chrX:49593353	T T	C C	4	a0001c0001t0001g0083 a0005c0005t0001g0087 a0005c0005t0001g0089 others(1): Show a0001c0001t0001g0083 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090	4	HG02622.hp1 NA18942.hp2 NA18972.hp1 others(1): Show HG02622.hp1 NA18942.hp2 NA18972.hp1 NA19062.hp1	intron_variant	MODIFIER	c.203-765T>C c.203-765T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593353
chrX:49593370	AG AG	A A	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.203-745delG c.203-745delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593370
chrX:49593388	GC GC	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.203-728delC c.203-728delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593388
chrX:49593391	TC TC	T T	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.203-724delC c.203-724delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593391
chrX:49593504	C C	CG CG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-613dupG c.203-613dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593504
chrX:49593510	GC GC	G G	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.203-605delC c.203-605delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593510
chrX:49593531	G G	C C	1	a0003c0003t0003g0043 a0003c0003t0003g0043	1	HG02109.hp1 HG02109.hp1	intron_variant	MODIFIER	c.203-587G>C c.203-587G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593531
chrX:49593538	T T	C C	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG02300.hp1 HG02300.hp1	intron_variant	MODIFIER	c.203-580T>C c.203-580T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593538
chrX:49593551	G G	A A	3	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085	3	HG03490.hp1 HG04115.hp1 NA18995.hp1 HG03490.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.203-567G>A c.203-567G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593551
chrX:49593588	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-528dupG c.203-528dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593588
chrX:49593637	T T	C C	13	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 others(10): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0006g0080 a0010c0010t0001g0053	28	HG00099.hp1 HG00140.hp1 HG01346.hp1 others(25): Show HG00099.hp1 HG00140.hp1 HG01346.hp1 HG01433.hp1 HG01978.hp1 HG02129.hp1 HG02148.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-481T>C c.203-481T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593637
chrX:49593721	T T	TA TA	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-393dupA c.203-393dupA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593721
chrX:49593747	A A	AT AT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-369dupT c.203-369dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593747
chrX:49593797	G G	A A	12	a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0001g0091 others(9): Show a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	13	HG02109.hp1 HG02148.hp2 HG02293.hp1 others(10): Show HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02886.hp1 HG02965.hp1 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18987.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp2	intron_variant	MODIFIER	c.203-321G>A c.203-321G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593797
chrX:49593894	C C	CT CT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-223dupT c.203-223dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593894
chrX:49593917	A A	G G	26	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	48	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(45): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-201A>G c.203-201A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593917
chrX:49593922	G G	GT GT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-195dupT c.203-195dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593922
chrX:49593925	T T	A A	26	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	48	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(45): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-193T>A c.203-193T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593925
chrX:49593932	G G	C C	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.203-186G>C c.203-186G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593932
chrX:49593936	A A	AC AC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-180dupC c.203-180dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49593936
chrX:49593961	T T	A A	21	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0086 others(18): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	22	HG01975.hp1 HG02109.hp1 HG02148.hp2 others(19): Show HG01975.hp1 HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02486.hp1 HG02886.hp1 HG02965.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18972.hp2 NA18987.hp1 NA18995.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.203-157T>A c.203-157T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593961
chrX:49593961	T T	C C	26	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	48	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(45): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-157T>C c.203-157T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49593961
chrX:49594006	T T	G G	6	a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 others(3): Show a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0004c0004t0001g0064 a0005c0005t0001g0075	6	HG01256.hp1 HG01884.hp1 HG02559.hp1 others(3): Show HG01256.hp1 HG01884.hp1 HG02559.hp1 HG02683.hp2 HG03098.hp2 HG03195.hp2	intron_variant	MODIFIER	c.203-112T>G c.203-112T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49594006
chrX:49594024	C C	CT CT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-90dupT c.203-90dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49594024
chrX:49594031	A A	AT AT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-86dupT c.203-86dupT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49594031
chrX:49594040	C C	CG CG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.203-78_203-77insG c.203-78_203-77insG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49594040
chrX:49594056	T T	C C	26	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	48	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(45): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-62T>C c.203-62T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49594056
chrX:49594063	T T	C C	21	a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0086 others(18): Show a0001c0001t0001g0012 a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	22	HG01975.hp1 HG02109.hp1 HG02148.hp2 others(19): Show HG01975.hp1 HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02486.hp1 HG02886.hp1 HG02965.hp1 HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18972.hp2 NA18987.hp1 NA18995.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.203-55T>C c.203-55T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49594063
chrX:49594072	C C	T T	26	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	48	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(45): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.203-46C>T c.203-46C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49594072
chrX:49594073	T T	G G	4	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0006g0080	4	HG03490.hp1 HG04115.hp1 HG04228.hp1 others(1): Show HG03490.hp1 HG04115.hp1 HG04228.hp1 NA18995.hp1	intron_variant	MODIFIER	c.203-45T>G c.203-45T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4		chrX	49594073
chrX:49594102	AT AT	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.203-10delT c.203-10delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	3/4	INFO_REALIGN_3_PRIME	chrX	49594102
chrX:49594242	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	splice_donor_variant&intron_variant	HIGH	c.328+1dupG c.328+1dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594242
chrX:49594251	A A	G G	1	a0001c0001t0002g0040 a0001c0001t0002g0040	1	HG02080.hp1 HG02080.hp1	splice_region_variant&intron_variant	LOW	c.328+8A>G c.328+8A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594251
chrX:49594258	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+17dupG c.328+17dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594258
chrX:49594273	AG AG	A A	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+33delG c.328+33delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594273
chrX:49594305	T T	C C	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+62T>C c.328+62T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594305
chrX:49594307	G G	C C	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+64G>C c.328+64G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594307
chrX:49594326	G G	GGA GGA	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+85_328+86dupAG c.328+85_328+86dupAG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594326
chrX:49594369	T T	C C	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+126T>C c.328+126T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594369
chrX:49594373	G G	GT GT	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+130_328+131ins others(1): Show c.328+130_328+131insT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594373
chrX:49594415	G G	GC GC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+174dupC c.328+174dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594415
chrX:49594433	G G	GC GC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+192dupC c.328+192dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594433
chrX:49594457	C C	T T	1	a0001c0001t0002g0039 a0001c0001t0002g0039	1	HG00423.hp1 HG00423.hp1	intron_variant	MODIFIER	c.328+214C>T c.328+214C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594457
chrX:49594477	A A	G G	1	a0001c0001t0002g0038 a0001c0001t0002g0038	1	NA18941.hp2 NA18941.hp2	intron_variant	MODIFIER	c.328+234A>G c.328+234A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594477
chrX:49594478	T T	G G	1	a0003c0003t0003g0046 a0003c0003t0003g0046	1	HG02148.hp2 HG02148.hp2	intron_variant	MODIFIER	c.328+235T>G c.328+235T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594478
chrX:49594500	G G	C C	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.328+257G>C c.328+257G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594500
chrX:49594523	G G	A A	3	a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0028 a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0028	4	HG00639.hp1 HG01175.hp1 HG01361.hp1 others(1): Show HG00639.hp1 HG01175.hp1 HG01361.hp1 HG02300.hp1	intron_variant	MODIFIER	c.328+280G>A c.328+280G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594523
chrX:49594570	CG CG	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.328+330delG c.328+330delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594570
chrX:49594571	G G	A A	10	a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0003g0022 others(7): Show a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	11	HG02109.hp1 HG02148.hp2 HG02293.hp1 others(8): Show HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02886.hp1 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18987.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp2	intron_variant	MODIFIER	c.328+328G>A c.328+328G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594571
chrX:49594592	C C	T T	8	a0003c0003t0001g0024 a0003c0003t0003g0043 a0003c0003t0003g0046 others(5): Show a0003c0003t0001g0024 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	8	HG02109.hp1 HG02148.hp2 NA18940.hp1 others(5): Show HG02109.hp1 HG02148.hp2 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18987.hp1 NA19057.hp1 NA19080.hp2	intron_variant	MODIFIER	c.328+349C>T c.328+349C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594592
chrX:49594603	C C	G G	1	a0002c0002t0001g0016 a0002c0002t0001g0016	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.328+360C>G c.328+360C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594603
chrX:49594624	G G	A A	30	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(27): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	52	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(49): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04115.hp1 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+381G>A c.328+381G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594624
chrX:49594643	C C	G G	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+400C>G c.328+400C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594643
chrX:49594646	T T	C C	25	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(22): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0007c0007t0002g0082 a0010c0010t0001g0053	47	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(44): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03688.hp2 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+403T>C c.328+403T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594646
chrX:49594675	AT AT	A A	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.328+435delT c.328+435delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594675
chrX:49594681	A A	C C	2	a0001c0001t0001g0030 a0001c0001t0006g0080 a0001c0001t0001g0030 a0001c0001t0006g0080	2	HG01433.hp1 HG04228.hp1 HG01433.hp1 HG04228.hp1	intron_variant	MODIFIER	c.328+438A>C c.328+438A>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594681
chrX:49594693	GC GC	G G	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.328+454delC c.328+454delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594693
chrX:49594701	AC AC	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.328+461delC c.328+461delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594701
chrX:49594706	A A	G G	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+463A>G c.328+463A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594706
chrX:49594720	A A	AG AG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+479dupG c.328+479dupG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594720
chrX:49594722	G G	A A	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+479G>A c.328+479G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594722
chrX:49594731	CA CA	C C	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+491delA c.328+491delA	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594731
chrX:49594735	C C	G G	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+492C>G c.328+492C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594735
chrX:49594768	A A	T T	2	a0001c0001t0001g0008 a0001c0001t0001g0028 a0001c0001t0001g0008 a0001c0001t0001g0028	3	HG01175.hp1 HG01361.hp1 HG02300.hp1 HG01175.hp1 HG01361.hp1 HG02300.hp1	intron_variant	MODIFIER	c.328+525A>T c.328+525A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594768
chrX:49594771	G G	A A	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+528G>A c.328+528G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594771
chrX:49594786	A A	G G	3	a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0028 a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0028	4	HG00639.hp1 HG01175.hp1 HG01361.hp1 others(1): Show HG00639.hp1 HG01175.hp1 HG01361.hp1 HG02300.hp1	intron_variant	MODIFIER	c.328+543A>G c.328+543A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594786
chrX:49594854	A A	AC AC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+614dupC c.328+614dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594854
chrX:49594861	A A	T T	3	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085	3	HG03490.hp1 HG04115.hp1 NA18995.hp1 HG03490.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.328+618A>T c.328+618A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594861
chrX:49594892	C C	T T	25	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 others(22): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0007c0007t0002g0082 a0010c0010t0001g0053	46	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(43): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01346.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03688.hp2 HG04115.hp1 HG04184.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+649C>T c.328+649C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594892
chrX:49594907	G G	GC GC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+665dupC c.328+665dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594907
chrX:49594925	A A	T T	12	a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0001g0091 others(9): Show a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088	13	HG02109.hp1 HG02148.hp2 HG02293.hp1 others(10): Show HG02109.hp1 HG02148.hp2 HG02293.hp1 HG02886.hp1 HG02965.hp1 NA18940.hp1 NA18948.hp1 NA18967.hp1 NA18987.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp2	intron_variant	MODIFIER	c.328+682A>T c.328+682A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594925
chrX:49594944	TC TC	T T	1	a0004c0004t0001g0093 a0004c0004t0001g0093	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.328+704delC c.328+704delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49594944
chrX:49594986	T T	TG TG	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+743_328+744ins others(1): Show c.328+743_328+744insG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594986
chrX:49594998	T T	C C	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+755T>C c.328+755T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49594998
chrX:49595078	T T	TTC TTC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+836_328+837dup others(2): Show c.328+836_328+837dupTC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595078
chrX:49595145	G G	C C	1	a0003c0003t0001g0092 a0003c0003t0001g0092	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.328+902G>C c.328+902G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595145
chrX:49595172	G G	C C	2	a0003c0003t0003g0010 a0003c0003t0003g0044 a0003c0003t0003g0010 a0003c0003t0003g0044	3	HG02257.hp1 HG02809.hp1 HG03453.hp2 HG02257.hp1 HG02809.hp1 HG03453.hp2	intron_variant	MODIFIER	c.328+929G>C c.328+929G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595172
chrX:49595216	A A	T T	1	a0001c0001t0002g0037 a0001c0001t0002g0037	1	NA18980.hp1 NA18980.hp1	intron_variant	MODIFIER	c.328+973A>T c.328+973A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595216
chrX:49595218	G G	A A	3	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085 a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0002g0085	3	HG03490.hp1 HG04115.hp1 NA18995.hp1 HG03490.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.328+975G>A c.328+975G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595218
chrX:49595223	G G	A A	27	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0006g0080 a0001c0001t0006g0081 a0007c0007t0002g0082 a0010c0010t0001g0053	49	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(46): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.328+980G>A c.328+980G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595223
chrX:49595245	A A	ATTCTCCC others(5): Show ATTCTCCCTCTTC	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+1005_328+1016d others(14): Show c.328+1005_328+1016dupCTCCCTCTTCTT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595245
chrX:49595278	C C	G G	1	a0003c0003t0001g0025 a0003c0003t0001g0025	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.328+1035C>G c.328+1035C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595278
chrX:49595352	AG AG	A A	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+1111delG c.328+1111delG	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595352
chrX:49595380	TC TC	T T	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+1140delC c.328+1140delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595380
chrX:49595440	AT AT	A A	1	a0008c0008t0001g0060 a0008c0008t0001g0060	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.328+1202delT c.328+1202delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595440
chrX:49595511	CT CT	C C	10	a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0001g0091 others(7): Show a0001c0001t0001g0012 a0003c0003t0001g0024 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052	11	HG02109.hp1 HG02293.hp1 HG02886.hp1 others(8): Show HG02109.hp1 HG02293.hp1 HG02886.hp1 HG02965.hp1 NA18940.hp1 NA18948.hp1 NA18987.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19080.hp2	intron_variant	MODIFIER	c.329-1191delT c.329-1191delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595511
chrX:49595517	T T	TTTC TTTC	4	a0003c0003t0003g0046 a0003c0003t0003g0088 a0004c0004t0001g0073 others(1): Show a0003c0003t0003g0046 a0003c0003t0003g0088 a0004c0004t0001g0073 a0005c0005t0001g0089	4	HG02148.hp2 HG02622.hp2 NA18967.hp1 others(1): Show HG02148.hp2 HG02622.hp2 NA18967.hp1 NA19062.hp1	intron_variant	MODIFIER	c.329-1192_329-1191i others(5): Show c.329-1192_329-1191insCTT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595517
chrX:49595520	T T	C C	29	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(26): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0003c0003t0001g0025 a0007c0007t0002g0082 a0010c0010t0001g0053	51	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(48): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-1191T>C c.329-1191T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595520
chrX:49595521	C C	T T	4	a0003c0003t0003g0046 a0003c0003t0003g0088 a0004c0004t0001g0073 others(1): Show a0003c0003t0003g0046 a0003c0003t0003g0088 a0004c0004t0001g0073 a0005c0005t0001g0089	4	HG02148.hp2 HG02622.hp2 NA18967.hp1 others(1): Show HG02148.hp2 HG02622.hp2 NA18967.hp1 NA19062.hp1	intron_variant	MODIFIER	c.329-1190C>T c.329-1190C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595521
chrX:49595522	T T	A A	3	a0003c0003t0003g0046 a0003c0003t0003g0088 a0005c0005t0001g0089 a0003c0003t0003g0046 a0003c0003t0003g0088 a0005c0005t0001g0089	3	HG02148.hp2 NA18967.hp1 NA19062.hp1 HG02148.hp2 NA18967.hp1 NA19062.hp1	intron_variant	MODIFIER	c.329-1189T>A c.329-1189T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595522
chrX:49595522	T T	TTTTA TTTTA	21	a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 others(18): Show a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0005c0005t0001g0087 a0005c0005t0001g0090 a0005c0009t0001g0071 a0008c0008t0001g0060	29	HG00099.hp2 HG00423.hp2 HG00438.hp2 others(26): Show HG00099.hp2 HG00423.hp2 HG00438.hp2 HG00741.hp2 HG01069.hp1 HG01167.hp1 HG01175.hp2 HG01346.hp2 HG01884.hp1 HG02004.hp2 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02165.hp2 HG02257.hp2 HG02293.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02683.hp2 HG03486.hp2 HG03540.hp1 HG03710.hp1 HG03942.hp1 HG04184.hp2 NA18942.hp2 NA18964.hp2 NA18972.hp1 NA20300.hp1	intron_variant	MODIFIER	c.329-1155_329-1152d others(6): Show c.329-1155_329-1152dupTTAT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595522
chrX:49595522	T T	TTTTATTT others(1): Show TTTTATTTA	10	a0001c0001t0001g0083 a0002c0002t0001g0050 a0002c0002t0001g0054 others(7): Show a0001c0001t0001g0083 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0005g0084 a0004c0004t0001g0093 a0005c0005t0001g0072 a0005c0005t0008g0056 a0009c0011t0005g0058	10	HG00639.hp2 HG01975.hp2 HG02004.hp1 others(7): Show HG00639.hp2 HG01975.hp2 HG02004.hp1 HG02165.hp1 HG02615.hp2 HG02622.hp1 HG03239.hp2 NA18987.hp2 NA19074.hp2 NA20300.hp2	intron_variant	MODIFIER	c.329-1159_329-1152d others(10): Show c.329-1159_329-1152dupTTATTTAT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595522
chrX:49595522	TTTTA TTTTA	T T	9	a0003c0003t0001g0023 a0003c0003t0001g0026 a0003c0003t0001g0042 others(6): Show a0003c0003t0001g0023 a0003c0003t0001g0026 a0003c0003t0001g0042 a0004c0004t0001g0064 a0004c0004t0004g0004 a0005c0005t0001g0074 a0005c0005t0007g0018 a0006c0006t0001g0061 a0006c0006t0001g0078	12	HG00741.hp1 HG01884.hp2 HG01975.hp1 others(9): Show HG00741.hp1 HG01884.hp2 HG01975.hp1 HG02109.hp2 HG02486.hp1 HG02723.hp2 HG02886.hp2 HG02895.hp1 HG03195.hp1 HG03195.hp2 HG03540.hp2 NA19080.hp1	intron_variant	MODIFIER	c.329-1155_329-1152d others(6): Show c.329-1155_329-1152delTTAT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595522
chrX:49595522	TTTTATTT others(1): Show TTTTATTTA	T T	1	a0002c0002t0001g0063 a0002c0002t0001g0063	1	HG03098.hp2 HG03098.hp2	intron_variant	MODIFIER	c.329-1159_329-1152d others(10): Show c.329-1159_329-1152delTTATTTAT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595522
chrX:49595522	TTTTATTT others(9): Show TTTTATTTATTTATTTA	T T	2	a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0001g0091 a0003c0003t0001g0092	2	HG02965.hp1 NA19043.hp1 HG02965.hp1 NA19043.hp1	intron_variant	MODIFIER	c.329-1167_329-1152d others(18): Show c.329-1167_329-1152delTTATTTATTTATTTAT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595522
chrX:49595533	TATTTATT others(20): Show TATTTATTTATTTATTTATTTATTTATC	T T	29	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(26): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0003c0003t0001g0025 a0007c0007t0002g0082 a0010c0010t0001g0053	51	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(48): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-1174_329-1148d others(29): Show c.329-1174_329-1148delTATTTATTTATTTATTTATTTATCATT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595533
chrX:49595546	AT AT	A A	2	a0003c0003t0003g0010 a0003c0003t0003g0044 a0003c0003t0003g0010 a0003c0003t0003g0044	3	HG02257.hp1 HG02809.hp1 HG03453.hp2 HG02257.hp1 HG02809.hp1 HG03453.hp2	intron_variant	MODIFIER	c.329-1162delT c.329-1162delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595546
chrX:49595556	TTATC TTATC	T T	2	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0001g0021 a0001c0001t0001g0086	2	HG04115.hp1 NA18995.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.329-1154_329-1151d others(6): Show c.329-1154_329-1151delTATC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595556
chrX:49595592	C C	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.329-1119C>T c.329-1119C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595592
chrX:49595614	T T	C C	29	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(26): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0003c0003t0001g0025 a0007c0007t0002g0082 a0010c0010t0001g0053	51	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(48): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-1097T>C c.329-1097T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595614
chrX:49595637	C C	T T	2	a0001c0001t0001g0021 a0001c0001t0001g0086 a0001c0001t0001g0021 a0001c0001t0001g0086	2	HG04115.hp1 NA18995.hp1 HG04115.hp1 NA18995.hp1	intron_variant	MODIFIER	c.329-1074C>T c.329-1074C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595637
chrX:49595654	T T	C C	92	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(89): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0002c0002t0001g0002 a0002c0002t0001g0006 a0002c0002t0001g0011 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0057 a0002c0002t0001g0059 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0094 a0002c0002t0005g0084 a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0024 a0003c0003t0001g0025 a0003c0003t0001g0026 a0003c0003t0001g0042 a0003c0003t0001g0091 a0003c0003t0001g0092 a0003c0003t0003g0010 a0003c0003t0003g0022 a0003c0003t0003g0043 a0003c0003t0003g0044 a0003c0003t0003g0046 a0003c0003t0003g0047 a0003c0003t0003g0048 a0003c0003t0003g0051 a0003c0003t0003g0052 a0003c0003t0003g0088 a0004c0004t0001g0007 a0004c0004t0001g0062 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0001g0093 a0004c0004t0004g0004 a0005c0005t0001g0072 a0005c0005t0001g0074 a0005c0005t0001g0075 a0005c0005t0001g0087 a0005c0005t0001g0089 a0005c0005t0001g0090 a0005c0005t0007g0018 a0005c0005t0008g0056 a0005c0009t0001g0071 a0006c0006t0001g0061 a0006c0006t0001g0078 a0007c0007t0002g0082 a0008c0008t0001g0060 a0010c0010t0001g0053	128	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(125): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03098.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18747.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18967.hp1 NA18972.hp1 NA18972.hp2 NA18980.hp1 NA18980.hp2 NA18987.hp1 NA18987.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19043.hp1 NA19057.hp1 NA19057.hp2 NA19062.hp1 NA19074.hp1 NA19074.hp2 NA19080.hp1 NA19080.hp2 NA19083.hp1 NA19086.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.329-1057T>C c.329-1057T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595654
chrX:49595691	C C	T T	17	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(14): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0006g0080 a0010c0010t0001g0053	33	HG00099.hp1 HG00140.hp1 HG00639.hp1 others(30): Show HG00099.hp1 HG00140.hp1 HG00639.hp1 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01978.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03688.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-1020C>T c.329-1020C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595691
chrX:49595692	T T	TC TC	1	a0003c0003t0001g0026 a0003c0003t0001g0026	1	HG01975.hp1 HG01975.hp1	intron_variant	MODIFIER	c.329-1013dupC c.329-1013dupC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595692
chrX:49595699	TC TC	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.329-1006delC c.329-1006delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595699
chrX:49595722	C C	T T	1	a0004c0004t0001g0062 a0004c0004t0001g0062	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.329-989C>T c.329-989C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595722
chrX:49595735	TC TC	T T	1	a0005c0005t0001g0089 a0005c0005t0001g0089	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.329-972delC c.329-972delC	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595735
chrX:49595773	C C	T T	1	a0002c0002t0001g0050 a0002c0002t0001g0050	1	NA19074.hp2 NA19074.hp2	intron_variant	MODIFIER	c.329-938C>T c.329-938C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595773
chrX:49595803	GT GT	G G	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.329-902delT c.329-902delT	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4	INFO_REALIGN_3_PRIME	chrX	49595803
chrX:49595818	A A	G G	32	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(29): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0080 a0001c0001t0006g0081 a0003c0003t0001g0025 a0007c0007t0002g0082 a0010c0010t0001g0053	54	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(51): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00438.hp1 HG00639.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01978.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02622.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04115.hp1 HG04184.hp1 HG04228.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18980.hp1 NA18980.hp2 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-893A>G c.329-893A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595818
chrX:49595922	C C	G G	3	a0001c0001t0001g0009 a0001c0001t0001g0021 a0001c0001t0006g0080 a0001c0001t0001g0009 a0001c0001t0001g0021 a0001c0001t0006g0080	4	HG04228.hp1 NA18995.hp1 NA19074.hp1 others(1): Show HG04228.hp1 NA18995.hp1 NA19074.hp1 NA19086.hp1	intron_variant	MODIFIER	c.329-789C>G c.329-789C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595922
chrX:49595922	C C	T T	1	a0003c0003t0001g0025 a0003c0003t0001g0025	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.329-789C>T c.329-789C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49595922
chrX:49596018	T T	C C	1	a0001c0001t0002g0036 a0001c0001t0002g0036	1	HG02683.hp1 HG02683.hp1	intron_variant	MODIFIER	c.329-693T>C c.329-693T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596018
chrX:49596107	T T	A A	10	a0002c0002t0001g0006 a0002c0002t0001g0019 a0002c0002t0001g0063 others(7): Show a0002c0002t0001g0006 a0002c0002t0001g0019 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0001g0068 a0002c0002t0001g0094 a0003c0003t0001g0026 a0005c0005t0001g0072 a0005c0005t0001g0075 a0005c0009t0001g0071	12	HG01167.hp1 HG01256.hp1 HG01975.hp1 others(9): Show HG01167.hp1 HG01256.hp1 HG01975.hp1 HG01975.hp2 HG02165.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG03098.hp2 HG03486.hp2 HG03540.hp1 NA20300.hp1	intron_variant	MODIFIER	c.329-604T>A c.329-604T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596107
chrX:49596171	G G	C C	2	a0002c0002t0001g0068 a0003c0003t0001g0025 a0002c0002t0001g0068 a0003c0003t0001g0025	2	HG01975.hp2 NA18747.hp2 HG01975.hp2 NA18747.hp2	intron_variant	MODIFIER	c.329-540G>C c.329-540G>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596171
chrX:49596288	T T	G G	1	a0003c0003t0001g0025 a0003c0003t0001g0025	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.329-423T>G c.329-423T>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596288
chrX:49596297	A A	G G	11	a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 others(8): Show a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0081 a0007c0007t0002g0082	17	HG00423.hp1 HG00438.hp1 HG01123.hp1 others(14): Show HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01515.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02683.hp1 HG03490.hp1 HG03669.hp2 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18980.hp1 NA18980.hp2 NA19003.hp2	intron_variant	MODIFIER	c.329-414A>G c.329-414A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596297
chrX:49596302	C C	T T	14	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(11): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0010c0010t0001g0053	30	HG00099.hp1 HG00140.hp1 HG01175.hp1 others(27): Show HG00099.hp1 HG00140.hp1 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01978.hp1 HG02129.hp1 HG02148.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03688.hp2 HG04184.hp1 NA18941.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18992.hp1 NA18992.hp2 NA19003.hp1 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-409C>T c.329-409C>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596302
chrX:49596332	T T	C C	6	a0003c0003t0001g0017 a0003c0003t0001g0023 a0004c0004t0001g0064 others(3): Show a0003c0003t0001g0017 a0003c0003t0001g0023 a0004c0004t0001g0064 a0004c0004t0001g0073 a0004c0004t0004g0004 a0006c0006t0001g0061	9	HG00741.hp1 HG01884.hp2 HG02486.hp1 others(6): Show HG00741.hp1 HG01884.hp2 HG02486.hp1 HG02622.hp2 HG02886.hp2 HG02895.hp1 HG03195.hp1 HG03195.hp2 NA18972.hp2	intron_variant	MODIFIER	c.329-379T>C c.329-379T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596332
chrX:49596339	T T	C C	1	a0002c0002t0001g0066 a0002c0002t0001g0066	1	HG02683.hp2 HG02683.hp2	intron_variant	MODIFIER	c.329-372T>C c.329-372T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596339
chrX:49596348	C C	G G	3	a0001c0001t0002g0005 a0001c0001t0002g0038 a0003c0003t0001g0025 a0001c0001t0002g0005 a0001c0001t0002g0038 a0003c0003t0001g0025	5	NA18747.hp2 NA18941.hp2 NA18942.hp1 others(2): Show NA18747.hp2 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18980.hp2	intron_variant	MODIFIER	c.329-363C>G c.329-363C>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596348
chrX:49596367	A A	G G	10	a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 others(7): Show a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0036 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0085 a0001c0001t0006g0081 a0007c0007t0002g0082	16	HG00423.hp1 HG00438.hp1 HG01123.hp1 others(13): Show HG00423.hp1 HG00438.hp1 HG01123.hp1 HG01123.hp2 HG01515.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02683.hp1 HG03490.hp1 HG03669.hp2 NA18941.hp2 NA18942.hp1 NA18945.hp1 NA18980.hp2 NA19003.hp2	intron_variant	MODIFIER	c.329-344A>G c.329-344A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596367
chrX:49596376	G G	A A	1	a0003c0003t0001g0025 a0003c0003t0001g0025	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.329-335G>A c.329-335G>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596376
chrX:49596434	A A	G G	3	a0002c0002t0001g0011 a0002c0002t0001g0016 a0002c0002t0001g0068 a0002c0002t0001g0011 a0002c0002t0001g0016 a0002c0002t0001g0068	4	HG01069.hp1 HG01975.hp2 HG02004.hp2 others(1): Show HG01069.hp1 HG01975.hp2 HG02004.hp2 HG02293.hp2	intron_variant	MODIFIER	c.329-277A>G c.329-277A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596434
chrX:49596508	A A	G G	1	a0003c0003t0001g0025 a0003c0003t0001g0025	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.329-203A>G c.329-203A>G	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596508
chrX:49596549	T T	A A	4	a0002c0002t0001g0011 a0002c0002t0001g0016 a0002c0002t0001g0068 others(1): Show a0002c0002t0001g0011 a0002c0002t0001g0016 a0002c0002t0001g0068 a0005c0005t0001g0075	5	HG01069.hp1 HG01256.hp1 HG01975.hp2 others(2): Show HG01069.hp1 HG01256.hp1 HG01975.hp2 HG02004.hp2 HG02293.hp2	intron_variant	MODIFIER	c.329-162T>A c.329-162T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596549
chrX:49596585	A A	T T	4	a0002c0002t0001g0011 a0002c0002t0001g0016 a0002c0002t0001g0068 others(1): Show a0002c0002t0001g0011 a0002c0002t0001g0016 a0002c0002t0001g0068 a0005c0005t0001g0075	5	HG01069.hp1 HG01256.hp1 HG01975.hp2 others(2): Show HG01069.hp1 HG01256.hp1 HG01975.hp2 HG02004.hp2 HG02293.hp2	intron_variant	MODIFIER	c.329-126A>T c.329-126A>T	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596585
chrX:49596590	T T	C C	18	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0079 a0001c0001t0001g0086 a0010c0010t0001g0053	34	HG00099.hp1 HG00140.hp1 HG00639.hp1 others(31): Show HG00099.hp1 HG00140.hp1 HG00639.hp1 HG01175.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01978.hp1 HG02129.hp1 HG02148.hp1 HG02300.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG03239.hp1 HG03669.hp1 HG03688.hp2 HG04115.hp1 HG04184.hp1 NA18941.hp1 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18992.hp1 NA18992.hp2 NA18995.hp1 NA19003.hp1 NA19004.hp1 NA19074.hp1 NA19083.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.329-121T>C c.329-121T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596590
chrX:49596611	T T	C C	2	a0003c0003t0001g0017 a0003c0003t0001g0023 a0003c0003t0001g0017 a0003c0003t0001g0023	2	HG02486.hp1 NA18972.hp2 HG02486.hp1 NA18972.hp2	intron_variant	MODIFIER	c.329-100T>C c.329-100T>C	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596611
chrX:49596628	T T	A A	1	a0005c0009t0001g0071 a0005c0009t0001g0071	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.329-83T>A c.329-83T>A	GAGE2A	ENSG00000189064.9	transcript	ENST00000362097.2	protein_coding	4/4		chrX	49596628

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JoGo Online Haplotype Explorer GAGE2A_chrX_49584496_49601824

JoGo Local Haplotype Explorer (on iGV) GAGE2A_chrX_49584496_49601824

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 10)

CCoding Level Haplotype Info (Total: 11)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 94)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 11)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 18)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 94)

Haplotype Details by Sample (Haploid Level) (Total: 130)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 15)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 3)

TTranscript Level Haplotype Variants (Exon) (Total: 7)

GGenebody Level Haplotype Variants (Intron) (Total: 318)

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Annotation (Repeats)

Annotation (SNP Array)