Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	distance	chr	external
SPANXA1_chrX_141578674_141589738	141580207	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18992.hp1 NA18992.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.35 others(6): Show c.3530delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	3466	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141580231	AG AG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.35 others(6): Show c.3506delC	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	3442	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141580374	TA TA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.33 others(6): Show c.3363delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	3299	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141580809	AT AT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0004 a0005c0007t0004	a0005c0007t0004g0022 a0005c0007t0004g0022	1	157	0.0064	-1	c.29 others(6): Show c.2928delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	2864	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141580817	AC AC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.29 others(6): Show c.2920delG	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	2856	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141581364	CA CA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18992.hp1 NA18992.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.23 others(6): Show c.2373delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	2309	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585005	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-32 others(5): Show c.-328delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	268	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585242	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-56 others(5): Show c.-565delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	505	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585365	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp1 HG02895.hp1 HG03041.hp2 others(3): Show HG02818.hp1 HG02895.hp1 HG03041.hp2 NA19001.hp1 NA19030.hp1 NA19056.hp1	a0001 a0005 a0007 a0001 a0005 a0007	a0001c0001 a0005c0007 a0007c0006 a0001c0001 a0005c0007 a0007c0006	a0001c0001t0001 a0005c0007t0004 a0007c0006t0004 a0001c0001t0001 a0005c0007t0004 a0007c0006t0004	a0001c0001t0001g0001 a0005c0007t0004g0022 a0007c0006t0004g0021 a0001c0001t0001g0001 a0005c0007t0004g0022 a0007c0006t0004g0021	6	157	0.0382	-1	c.-68 others(5): Show c.-688delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	628	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585535	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp2 HG00558.hp2 HG01106.hp1 others(7): Show HG00423.hp2 HG00558.hp2 HG01106.hp1 HG02109.hp1 HG02572.hp1 HG03041.hp2 NA18906.hp1 NA18957.hp1 NA19010.hp1 NA19030.hp1	a0001 a0003 a0005 others(1): Show a0001 a0003 a0005 a0007	a0001c0001 a0003c0003 a0005c0007 others(1): Show a0001c0001 a0003c0003 a0005c0007 a0007c0006	a0001c0001t0002 a0001c0001t0004 a0003c0003t0002 others(2): Show a0001c0001t0002 a0001c0001t0004 a0003c0003t0002 a0005c0007t0004 a0007c0006t0004	a0001c0001t0002g0005 a0001c0001t0002g0025 a0001c0001t0004g0023 others(3): Show a0001c0001t0002g0005 a0001c0001t0002g0025 a0001c0001t0004g0023 a0003c0003t0002g0024 a0005c0007t0004g0022 a0007c0006t0004g0021	10	157	0.0637	-1	c.-85 others(5): Show c.-858delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	798	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585553	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-87 others(5): Show c.-876delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	816	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585660	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0001 a0001c0010t0001	a0001c0010t0001g0019 a0001c0010t0001g0019	1	157	0.0064	-1	c.-98 others(5): Show c.-983delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	923	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585709	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-10 others(6): Show c.-1032delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	972	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141585975	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-12 others(6): Show c.-1298delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	1238	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141586011	GA GA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-13 others(6): Show c.-1334delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	1274	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141586129	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-14 others(6): Show c.-1452delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	1392	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141586485	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-18 others(6): Show c.-1808delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	1748	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141587205	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-25 others(6): Show c.-2528delC	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	2468	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141587423	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 NA18957.hp1 NA18959.hp1 others(1): Show HG01069.hp1 NA18957.hp1 NA18959.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0001 a0001c0001t0002g0005 a0001c0001t0001g0001 a0001c0001t0002g0005	4	157	0.0255	-1	c.-27 others(6): Show c.-2746delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	2686	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141588298	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 HG00544.hp2 HG00733.hp1 others(27): Show HG00544.hp1 HG00544.hp2 HG00733.hp1 HG01358.hp1 HG01891.hp1 HG01891.hp2 HG01981.hp2 HG02056.hp1 HG02071.hp1 HG02109.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02647.hp1 HG02738.hp1 HG02886.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03927.hp2 NA18966.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp1 NA19081.hp2 NA19083.hp1 NA19240.hp1 NA19240.hp2	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0002c0002 a0008c0009 a0001c0001 a0002c0002 a0008c0009	a0001c0001t0004 a0002c0002t0001 a0002c0002t0003 others(1): Show a0001c0001t0004 a0002c0002t0001 a0002c0002t0003 a0008c0009t0001	a0001c0001t0004g0009 a0002c0002t0001g0002 a0002c0002t0001g0016 others(4): Show a0001c0001t0004g0009 a0002c0002t0001g0002 a0002c0002t0001g0016 a0002c0002t0001g0018 a0002c0002t0003g0004 a0002c0002t0003g0020 a0008c0009t0001g0015	30	157	0.1911	-1	c.-36 others(6): Show c.-3621delA	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	3561	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141588672	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-39 others(6): Show c.-3995delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	3935	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141589162	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	157	0.0064	-1	c.-44 others(6): Show c.-4485delT	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	4425	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141589184	TG TG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-45 others(6): Show c.-4507delC	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	4447	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141589515	TG TG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-48 others(6): Show c.-4838delC	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	4778	chrX	TogoVar
SPANXA1_chrX_141578674_141589738	141589594	AC AC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	157	0.0064	-1	c.-49 others(6): Show c.-4917delG	SPANXA1	ENSG00000198021.8	transcript	ENST00000370519.4	protein_coding	4857	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141585365	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp1 HG02895.hp1 HG03041.hp2 others(4): Show HG02818.hp1 HG02895.hp1 HG03041.hp2 NA18969.hp1 NA18969.hp2 NA18982.hp1 NA19030.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0014	a0001c0001 a0002c0002 a0004c0006 others(2): Show a0001c0001 a0002c0002 a0004c0006 a0004c0018 a0014c0008	a0001c0001t0001 a0002c0002t0001 a0004c0006t0004 others(2): Show a0001c0001t0001 a0002c0002t0001 a0004c0006t0004 a0004c0018t0004 a0014c0008t0002	a0001c0001t0001g0001 a0002c0002t0001g0001 a0004c0006t0004g0010 others(2): Show a0001c0001t0001g0001 a0002c0002t0001g0001 a0004c0006t0004g0010 a0004c0018t0004g0009 a0014c0008t0002g0019	7	185	0.0378	-1	c.-44 others(6): Show c.-4402delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	4342	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141585535	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp2 HG01106.hp1 HG01168.hp2 others(10): Show HG00558.hp2 HG01106.hp1 HG01168.hp2 HG02109.hp2 HG02896.hp2 HG03041.hp2 HG03486.hp2 HG03490.hp1 NA18522.hp1 NA18957.hp1 NA18989.hp1 NA19010.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0002c0002t0001	a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0002g0004 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0002g0004 a0001c0001t0008g0015 a0002c0002t0001g0001	13	185	0.0703	-1	c.-42 others(6): Show c.-4232delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	4172	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141585553	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.-42 others(6): Show c.-4214delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	4154	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141585608	CG CG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.-41 others(6): Show c.-4159delG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	4099	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141585856	GA GA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0014 a0014	a0014c0008 a0014c0008	a0014c0008t0002 a0014c0008t0002	a0014c0008t0002g0019 a0014c0008t0002g0019	1	185	0.0054	-1	c.-39 others(6): Show c.-3911delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	3851	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141585986	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01943.hp1 NA18965.hp1 HG01943.hp1 NA18965.hp1	a0006 a0013 a0006 a0013	a0006c0012 a0013c0007 a0006c0012 a0013c0007	a0006c0012t0002 a0013c0007t0007 a0006c0012t0002 a0013c0007t0007	a0006c0012t0002g0020 a0013c0007t0007g0017 a0006c0012t0002g0020 a0013c0007t0007g0017	2	185	0.0108	-1	c.-37 others(6): Show c.-3781delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	3721	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141586139	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.-36 others(6): Show c.-3628delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	3568	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141586516	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.-32 others(6): Show c.-3251delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	3191	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141586558	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.-32 others(6): Show c.-3209delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	3149	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141586852	TC TC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0006 a0006	a0006c0012 a0006c0012	a0006c0012t0002 a0006c0012t0002	a0006c0012t0002g0020 a0006c0012t0002g0020	1	185	0.0054	-1	c.-29 others(6): Show c.-2915delC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2855	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141587168	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0012 a0012	a0012c0009 a0012c0009	a0012c0009t0001 a0012c0009t0001	a0012c0009t0001g0013 a0012c0009t0001g0013	1	185	0.0054	-1	c.-25 others(6): Show c.-2599delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2539	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141587407	GT GT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	185	0.0054	-1	c.-23 others(6): Show c.-2360delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2300	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141587423	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 NA18955.hp1 HG01069.hp1 NA18955.hp1	a0001 a0012 a0001 a0012	a0001c0001 a0012c0009 a0001c0001 a0012c0009	a0001c0001t0001 a0012c0009t0001 a0001c0001t0001 a0012c0009t0001	a0001c0001t0001g0001 a0012c0009t0001g0013 a0001c0001t0001g0001 a0012c0009t0001g0013	2	185	0.0108	-1	c.-23 others(6): Show c.-2344delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2284	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141587642	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-21 others(6): Show c.-2125delC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2065	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141587657	AG AG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-21 others(6): Show c.-2110delG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2050	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141587995	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-17 others(6): Show c.-1772delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1712	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588204	CA CA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0006 a0006	a0006c0012 a0006c0012	a0006c0012t0002 a0006c0012t0002	a0006c0012t0002g0020 a0006c0012t0002g0020	1	185	0.0054	-1	c.-15 others(6): Show c.-1563delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1503	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588256	TG TG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-15 others(6): Show c.-1511delG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1451	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588267	GC GC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-15 others(6): Show c.-1500delC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1440	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588298	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(29): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02738.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	a0001 a0003 a0005 others(4): Show a0001 a0003 a0005 a0006 a0008 a0011 a0014	a0001c0001 a0003c0003 a0005c0004 others(4): Show a0001c0001 a0003c0003 a0005c0004 a0006c0012 a0008c0015 a0011c0013 a0014c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0003c0003t0001 a0003c0003t0002 a0005c0004t0001 a0005c0004t0002 a0006c0012t0002 a0008c0015t0003 a0011c0013t0001 a0014c0008t0002	a0001c0001t0001g0001 a0001c0001t0002g0004 a0001c0001t0003g0004 others(10): Show a0001c0001t0001g0001 a0001c0001t0002g0004 a0001c0001t0003g0004 a0003c0003t0001g0002 a0003c0003t0001g0008 a0003c0003t0002g0002 a0003c0003t0002g0012 a0005c0004t0001g0002 a0005c0004t0002g0002 a0006c0012t0002g0020 a0008c0015t0003g0023 a0011c0013t0001g0002 a0014c0008t0002g0019	32	185	0.1730	-1	c.-14 others(6): Show c.-1469delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1409	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588312	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-14 others(6): Show c.-1455delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1395	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588405	AT AT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0011 a0015c0016t0001g0011	1	185	0.0054	-1	c.-13 others(6): Show c.-1362delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1302	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588414	CT CT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0015 a0015	a0015c0016 a0015c0016	a0015c0016t0001 a0015c0016t0001	a0015c0016t0001g0011 a0015c0016t0001g0011	1	185	0.0054	-1	c.-13 others(6): Show c.-1353delT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1293	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588660	TA TA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0013 a0013	a0013c0007 a0013c0007	a0013c0007t0007 a0013c0007t0007	a0013c0007t0007g0017 a0013c0007t0007g0017	1	185	0.0054	-1	c.-11 others(6): Show c.-1107delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1047	chrX	TogoVar
SPANXA2_chrX_141584708_141595762	141588876	CG CG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0012 a0012	a0012c0009 a0012c0009	a0012c0009t0001 a0012c0009t0001	a0012c0009t0001g0013 a0012c0009t0001g0013	1	185	0.0054	-1	c.-89 others(5): Show c.-891delG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	831	chrX	TogoVar

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