Search by Genic region
Multiple Alignments (by aa haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
| geneid | 30014 |
|---|---|
| ensemblid | ENSG00000198021.8 |
| hgncid | 11218 |
| symbol | SPANXA1 |
| name | sperm protein associated with the nucleus, X-linked, family member A1 |
| refseq_nuc | NM_013453.3 |
| refseq_prot | NP_038481.2 |
| ensembl_nuc | ENST00000370519.4 |
| ensembl_prot | ENSP00000359550.3 |
| mane_status | MANE Select |
| chr | chrX |
| start | 141583674 |
| end | 141584738 |
| strand | - |
| ver | v1.2 |
| region | chrX:141583674-141584738 |
| region5000 | chrX:141578674-141589738 |
| regionname0 | SPANXA1_chrX_141583674_141584738 |
| regionname5000 | SPANXA1_chrX_141578674_141589738 |
| ahapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 97 | 102 | 18 | 18 | 58 | 0 | 8 | 50 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0002 | 0/0 | 97 | 26 | 12 | 3 | 9 | 0 | 2 | 5 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0003 | 0/0 | 97 | 22 | 7 | 1 | 12 | 0 | 2 | 11 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0004 | 0/0 | 97 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0005 | 0/0 | 97 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0006 | 0/0 | 97 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0007 | 0/0 | 97 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0008 | 0/0 | 97 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0009 | 0/0 | 97 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c0001 | 0/0 | 294 | 101 | 18 | 18 | 57 | 0 | 8 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0002 | 0/0 | 294 | 26 | 12 | 3 | 9 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0003 | 0/0 | 294 | 22 | 7 | 1 | 12 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0004 | 0/0 | 294 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0005 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0006 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0007 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0008 | 0/0 | 294 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0009 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| c0010 | 0/0 | 294 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| thapid | grch38chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t0001 | 0/0 | 125 | 135 | 27 | 21 | 75 | 0 | 12 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| t0002 | 0/0 | 125 | 7 | 2 | 1 | 4 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| t0003 | 0/0 | 125 | 6 | 5 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| t0004 | 0/0 | 125 | 6 | 6 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| t0005 | 0/0 | 125 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g0001 | 0/0 | 83 | 11 | 17 | 47 | 0 | 8 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0002 | 0/0 | 18 | 5 | 3 | 8 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0003 | 0/0 | 15 | 0 | 1 | 12 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0004 | 0/0 | 5 | 4 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0005 | 0/0 | 5 | 1 | 0 | 4 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0006 | 0/0 | 4 | 0 | 0 | 4 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0007 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0008 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0009 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0010 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0011 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0012 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0013 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0014 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0015 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0016 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0017 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0018 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0019 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0020 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0021 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0022 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0023 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0024 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| g0025 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| achapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 0/0 | 294 | 101 | 18 | 18 | 57 | 0 | 8 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0001c0010 | 0/0 | 294 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0002c0002 | 0/0 | 294 | 26 | 12 | 3 | 9 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0003c0003 | 0/0 | 294 | 22 | 7 | 1 | 12 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0004c0004 | 0/0 | 294 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0005c0008 | 0/0 | 294 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0006c0009 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0007c0005 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0008c0007 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0009c0006 | 0/0 | 294 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | 0/0 | 418 | 91 | 13 | 17 | 53 | 0 | 8 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0001c0001t0002 | 0/0 | 418 | 6 | 1 | 1 | 4 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0001c0001t0004 | 0/0 | 418 | 4 | 4 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0001c0010t0001 | 0/0 | 418 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0002c0002t0001 | 0/0 | 418 | 20 | 7 | 3 | 8 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0002c0002t0003 | 0/0 | 418 | 6 | 5 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0003c0003t0001 | 0/0 | 418 | 18 | 3 | 1 | 12 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0003c0003t0002 | 0/0 | 418 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0003c0003t0005 | 0/0 | 418 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0004c0004t0001 | 0/0 | 418 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0005c0008t0001 | 0/0 | 418 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0006c0009t0001 | 0/0 | 418 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0007c0005t0001 | 0/0 | 418 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0008c0007t0004 | 0/0 | 418 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| a0009c0006t0004 | 0/0 | 418 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | copy fasta | chrX | 141578674 | 141589738 |
| actghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0001 | 0/0 | 83 | 11 | 17 | 47 | 0 | 8 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0001g0006 | 0/0 | 4 | 0 | 0 | 4 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0001g0011 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0001g0013 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0001g0017 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0002g0005 | 0/0 | 5 | 1 | 0 | 4 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0002g0025 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0004g0009 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0001t0004g0023 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0001c0010t0001g0019 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0002c0002t0001g0002 | 0/0 | 18 | 5 | 3 | 8 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0002c0002t0001g0016 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0002c0002t0001g0018 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0002c0002t0003g0004 | 0/0 | 5 | 4 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0002c0002t0003g0020 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0003c0003t0001g0003 | 0/0 | 15 | 0 | 1 | 12 | 0 | 2 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0003c0003t0001g0007 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0003c0003t0002g0024 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0003c0003t0005g0008 | 0/0 | 3 | 3 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0004c0004t0001g0010 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0005c0008t0001g0014 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0006c0009t0001g0015 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0007c0005t0001g0012 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0008c0007t0004g0022 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| a0009c0006t0004g0021 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG00423 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | CHS | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00423 | hp2 | a0001 | c0001 | t0002 | g0005 | EAS | CHS | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00544 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | CHS | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00544 | hp2 | a0002 | c0002 | t0001 | g0002 | EAS | CHS | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00558 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | CHS | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00558 | hp2 | a0001 | c0001 | t0002 | g0005 | EAS | CHS | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00733 | hp1 | a0002 | c0002 | t0001 | g0002 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG00733 | hp2 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01069 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01099 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01106 | hp1 | a0001 | c0001 | t0002 | g0025 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01167 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01175 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01175 | hp2 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01192 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01243 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PUR | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01256 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | CLM | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01258 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | CLM | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01358 | hp1 | a0002 | c0002 | t0001 | g0002 | AMR | CLM | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01361 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | CLM | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01361 | hp2 | a0001 | c0001 | t0001 | g0001 | AMR | CLM | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01891 | hp1 | a0002 | c0002 | t0003 | g0004 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01891 | hp2 | a0001 | c0001 | t0004 | g0009 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01934 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01975 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01975 | hp2 | a0003 | c0003 | t0001 | g0003 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01981 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG01981 | hp2 | a0002 | c0002 | t0001 | g0002 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02015 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02055 | hp1 | a0003 | c0003 | t0001 | g0007 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02056 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02071 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02074 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02083 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02129 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02135 | hp1 | a0001 | c0001 | t0001 | g0013 | EAS | KHV | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02145 | hp1 | a0004 | c0004 | t0001 | g0010 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02258 | hp1 | a0002 | c0002 | t0001 | g0018 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02280 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02280 | hp2 | a0002 | c0002 | t0001 | g0002 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02293 | hp1 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02293 | hp2 | a0001 | c0001 | t0001 | g0001 | AMR | PEL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02451 | hp1 | a0001 | c0001 | t0004 | g0009 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02451 | hp2 | a0003 | c0003 | t0001 | g0007 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02572 | hp1 | a0001 | c0001 | t0002 | g0005 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02602 | hp1 | a0003 | c0003 | t0001 | g0003 | SAS | PJL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02615 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02615 | hp2 | a0003 | c0003 | t0005 | g0008 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02647 | hp1 | a0002 | c0002 | t0003 | g0020 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02717 | hp1 | a0001 | c0001 | t0001 | g0011 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02735 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | PJL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02738 | hp1 | a0002 | c0002 | t0001 | g0002 | SAS | PJL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02818 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02818 | hp2 | a0001 | c0001 | t0001 | g0001 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02886 | hp1 | a0002 | c0002 | t0003 | g0004 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02886 | hp2 | a0001 | c0001 | t0001 | g0001 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02895 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02965 | hp1 | a0001 | c0001 | t0001 | g0011 | AFR | ESN | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02970 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | ESN | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02970 | hp2 | a0002 | c0002 | t0001 | g0002 | AFR | ESN | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02976 | hp1 | a0002 | c0002 | t0003 | g0004 | AFR | ESN | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02976 | hp2 | a0001 | c0001 | t0004 | g0009 | AFR | ESN | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03041 | hp1 | a0002 | c0002 | t0001 | g0002 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03041 | hp2 | a0008 | c0007 | t0004 | g0022 | AFR | GWD | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03098 | hp1 | a0002 | c0002 | t0003 | g0004 | AFR | MSL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03130 | hp1 | a0004 | c0004 | t0001 | g0010 | AFR | ESN | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03209 | hp1 | a0003 | c0003 | t0005 | g0008 | AFR | MSL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03654 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | PJL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03688 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | STU | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03710 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | PJL | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03927 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | BEB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03927 | hp2 | a0002 | c0002 | t0001 | g0002 | SAS | BEB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG03942 | hp1 | a0003 | c0003 | t0001 | g0003 | SAS | BEB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG04204 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | STU | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG04228 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | STU | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18906 | hp1 | a0001 | c0001 | t0004 | g0023 | AFR | YRI | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18906 | hp2 | a0003 | c0003 | t0001 | g0007 | AFR | YRI | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18939 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18939 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18945 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18951 | hp1 | a0001 | c0001 | t0001 | g0006 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18951 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18956 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18956 | hp2 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18957 | hp1 | a0001 | c0001 | t0002 | g0005 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18957 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18959 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18960 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18961 | hp1 | a0005 | c0008 | t0001 | g0014 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18962 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18965 | hp1 | a0001 | c0010 | t0001 | g0019 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18966 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18967 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18970 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18973 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18973 | hp2 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18975 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18975 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18983 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18984 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18986 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18990 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18991 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18991 | hp2 | a0001 | c0001 | t0001 | g0006 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18992 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18992 | hp2 | a0001 | c0001 | t0001 | g0006 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18993 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18993 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18994 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA18995 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19001 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19001 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19004 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19010 | hp1 | a0001 | c0001 | t0002 | g0005 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19010 | hp2 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19011 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19011 | hp2 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19012 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19030 | hp1 | a0009 | c0006 | t0004 | g0021 | AFR | LWK | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19030 | hp2 | a0002 | c0002 | t0001 | g0016 | AFR | LWK | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19055 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19056 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19064 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19064 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19065 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19065 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19066 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19067 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19068 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19070 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19074 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19074 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19075 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19077 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19077 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19079 | hp1 | a0002 | c0002 | t0003 | g0004 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19080 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19080 | hp2 | a0001 | c0001 | t0001 | g0006 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19081 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19081 | hp2 | a0002 | c0002 | t0001 | g0002 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19083 | hp1 | a0002 | c0002 | t0001 | g0002 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19085 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19087 | hp1 | a0001 | c0001 | t0001 | g0017 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19087 | hp2 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19088 | hp1 | a0003 | c0003 | t0001 | g0003 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19091 | hp1 | a0001 | c0001 | t0001 | g0001 | EAS | JPT | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19240 | hp1 | a0002 | c0002 | t0001 | g0002 | AFR | YRI | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA19240 | hp2 | a0006 | c0009 | t0001 | g0015 | AFR | YRI | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA20129 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | ASW | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA20129 | hp2 | a0001 | c0001 | t0001 | g0001 | AFR | ASW | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA20905 | hp1 | a0001 | c0001 | t0001 | g0001 | SAS | GIH | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02109 | hp1 | a0003 | c0003 | t0002 | g0024 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02109 | hp2 | a0002 | c0002 | t0001 | g0002 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02559 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| HG02559 | hp2 | a0001 | c0001 | t0001 | g0001 | AFR | ACB | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA20300 | hp1 | a0003 | c0003 | t0005 | g0008 | AFR | USA | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| NA20300 | hp2 | a0007 | c0005 | t0001 | g0012 | AFR | USA | SPANXA1_chrX_141578674_141589738 | SPANXA1 | chrX | 141578674 | 141589738 |
| chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:141583793
|
A | T | 2 | a0004a0005 | 3 | HG02145.hp1 HG03130.hp1 NA18961.hp1 |
missense_variant | MODERATE | c.239T>A | p.Leu80His | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 299/418 | 239/294 | 80/97 | chrX | 141583793 | ||
| chrX:141583794
|
G | C | 2 | a0004a0005 | 3 | HG02145.hp1 HG03130.hp1 NA18961.hp1 |
missense_variant | MODERATE | c.238C>G | p.Leu80Val | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 298/418 | 238/294 | 80/97 | chrX | 141583794 | ||
| chrX:141583830
|
G | C | 2 | a0005a0006 | 2 | NA18961.hp1 NA19240.hp2 |
missense_variant | MODERATE | c.202C>G | p.Leu68Val | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 262/418 | 202/294 | 68/97 | chrX | 141583830 | ||
| chrX:141583855
|
A | C | 2 | a0003a0009 | 23 | HG00423.hp1 HG01975.hp2 HG02055.hp1 others(20): Show |
missense_variant | MODERATE | c.177T>G | p.Phe59Leu | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 237/418 | 177/294 | 59/97 | chrX | 141583855 | ||
| chrX:141583857
|
A | C | 2 | a0003a0009 | 23 | HG00423.hp1 HG01975.hp2 HG02055.hp1 others(20): Show |
missense_variant | MODERATE | c.175T>G | p.Phe59Val | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 235/418 | 175/294 | 59/97 | chrX | 141583857 | ||
| chrX:141583906
|
C | T | 2 | a0002a0006 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
missense_variant | MODERATE | c.126G>A | p.Met42Ile | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 186/418 | 126/294 | 42/97 | chrX | 141583906 | ||
| chrX:141583908
|
T | G | 2 | a0002a0006 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
missense_variant | MODERATE | c.124A>C | p.Met42Leu | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 184/418 | 124/294 | 42/97 | chrX | 141583908 | ||
| chrX:141583938
|
C | A | 2 | a0002a0006 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
missense_variant | MODERATE | c.94G>T | p.Asp32Tyr | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 154/418 | 94/294 | 32/97 | chrX | 141583938 | ||
| chrX:141583943
|
G | C | 2 | a0002a0006 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
missense_variant | MODERATE | c.89C>G | p.Thr30Ser | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 149/418 | 89/294 | 30/97 | chrX | 141583943 | ||
| chrX:141583947
|
G | A | 2 | a0002a0006 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
missense_variant | MODERATE | c.85C>T | p.Pro29Ser | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 145/418 | 85/294 | 29/97 | chrX | 141583947 | ||
| chrX:141584608
|
A | G | 2 | a0008a0009 | 2 | HG03041.hp2 NA19030.hp1 |
missense_variant&splice_region_variant | MODERATE | c.71T>C | p.Met24Thr | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 131/418 | 71/294 | 24/97 | chrX | 141584608 | ||
| chrX:141584617
|
G | A | 2 | a0008a0009 | 2 | HG03041.hp2 NA19030.hp1 |
missense_variant | MODERATE | c.62C>T | p.Ala21Val | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 122/418 | 62/294 | 21/97 | chrX | 141584617 | ||
| chrX:141584628
|
A | T | 3 | a0007a0008a0009 | 3 | HG03041.hp2 NA19030.hp1 NA20300.hp2 |
missense_variant | MODERATE | c.51T>A | p.Asp17Glu | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 111/418 | 51/294 | 17/97 | chrX | 141584628 |
| chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:141583915
|
A | C | 2 | a0002c0002a0006c0009 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
synonymous_variant | LOW | c.117T>G | p.Pro39Pro | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 177/418 | 117/294 | 39/97 | chrX | 141583915 | ||
| chrX:141583945
|
T | C | 2 | a0002c0002a0006c0009 | 27 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(24): Show |
synonymous_variant | LOW | c.87A>G | p.Pro29Pro | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 147/418 | 87/294 | 29/97 | chrX | 141583945 | ||
| chrX:141584613
|
G | A | 3 | a0001c0010a0008c0007a0009c0006 | 3 | HG03041.hp2 NA18965.hp1 NA19030.hp1 |
synonymous_variant | LOW | c.66C>T | p.Asn22Asn | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 126/418 | 66/294 | 22/97 | chrX | 141584613 | ||
| chrX:141584616
|
G | C | 2 | a0008c0007a0009c0006 | 2 | HG03041.hp2 NA19030.hp1 |
synonymous_variant | LOW | c.63C>G | p.Ala21Ala | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 123/418 | 63/294 | 21/97 | chrX | 141584616 |
| chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:141583727
|
G | A | 1 | a0003c0003t0005 | 3 | HG02615.hp2 HG03209.hp1 NA20300.hp1 |
3_prime_UTR_variant | MODIFIER | c.*11C>T | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 2/2 | 11 | chrX | 141583727 | |||||
| chrX:141584703
|
A | T | 3 | a0001c0001t0004a0008c0007t0004a0009c0006t0004 | 6 | HG01891.hp2 HG02451.hp1 HG02976.hp2 others(3): Show |
5_prime_UTR_variant | MODIFIER | c.-25T>A | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 25 | chrX | 141584703 | |||||
| chrX:141584705
|
T | C | 6 | a0001c0001t0002a0001c0001t0004a0002c0002t0003others(3): Show | 19 | HG00423.hp2 HG00558.hp2 HG01106.hp1 others(16): Show |
5_prime_UTR_variant | MODIFIER | c.-27A>G | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 27 | chrX | 141584705 | |||||
| chrX:141584734
|
T | G | 5 | a0001c0001t0002a0001c0001t0004a0003c0003t0002others(2): Show | 13 | HG00423.hp2 HG00558.hp2 HG01106.hp1 others(10): Show |
5_prime_UTR_variant | MODIFIER | c.-56A>C | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/2 | 56 | chrX | 141584734 |
| chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrX:141583971
|
G | A | 7 | a0002c0002t0001g0002a0002c0002t0001g0016a0002c0002t0001g0018others(4): Show | 30 | HG00544.hp1 HG00544.hp2 HG00733.hp1 others(27): Show |
intron_variant | MODIFIER | c.73-12C>T | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141583971 | ||||||
| chrX:141583999
|
T | TG | 1 | a0002c0002t0001g0016 | 1 | NA19030.hp2 | intron_variant | MODIFIER | c.73-41dupC | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141583999 | ||||||
| chrX:141584033
|
A | G | 7 | a0001c0001t0001g0013a0001c0001t0004g0009a0001c0001t0004g0023others(4): Show | 12 | HG01891.hp2 HG02055.hp1 HG02135.hp1 others(9): Show |
intron_variant | MODIFIER | c.73-74T>C | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584033 | ||||||
| chrX:141584059
|
T | A | 1 | a0001c0001t0001g0017 | 1 | NA19087.hp1 | intron_variant | MODIFIER | c.73-100A>T | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584059 | ||||||
| chrX:141584142
|
G | C | 1 | a0002c0002t0001g0018 | 1 | HG02258.hp1 | intron_variant | MODIFIER | c.73-183C>G | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584142 | ||||||
| chrX:141584313
|
G | T | 1 | a0001c0001t0001g0006 | 4 | NA18951.hp1 NA18991.hp2 NA18992.hp2 others(1): Show |
intron_variant | MODIFIER | c.72+294C>A | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584313 | ||||||
| chrX:141584363
|
G | A | 3 | a0001c0001t0001g0011a0008c0007t0004g0022a0009c0006t0004g0021 | 4 | HG02717.hp1 HG02965.hp1 HG03041.hp2 others(1): Show |
intron_variant | MODIFIER | c.72+244C>T | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584363 | ||||||
| chrX:141584402
|
T | C | 2 | a0001c0001t0002g0025a0001c0001t0004g0009 | 4 | HG01106.hp1 HG01891.hp2 HG02451.hp1 others(1): Show |
intron_variant | MODIFIER | c.72+205A>G | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584402 | ||||||
| chrX:141584461
|
C | G | 2 | a0002c0002t0003g0020a0003c0003t0001g0007 | 4 | HG02055.hp1 HG02451.hp2 HG02647.hp1 others(1): Show |
intron_variant | MODIFIER | c.72+146G>C | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584461 | ||||||
| chrX:141584462
|
C | T | 2 | a0002c0002t0003g0020a0003c0003t0001g0007 | 4 | HG02055.hp1 HG02451.hp2 HG02647.hp1 others(1): Show |
intron_variant | MODIFIER | c.72+145G>A | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584462 | ||||||
| chrX:141584590
|
G | A | 2 | a0008c0007t0004g0022a0009c0006t0004g0021 | 2 | HG03041.hp2 NA19030.hp1 |
intron_variant | MODIFIER | c.72+17C>T | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584590 | ||||||
| chrX:141584600
|
G | A | 2 | a0008c0007t0004g0022a0009c0006t0004g0021 | 2 | HG03041.hp2 NA19030.hp1 |
splice_region_variant&intron_variant | LOW | c.72+7C>T | SPANXA1 | ENSG00000198021.8 | transcript | ENST00000370519.4 | protein_coding | 1/1 | chrX | 141584600 |