Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	external
STAG2_chrX_123956706_124107656	124007828	GT GT	G G	intron_variant intron_variant	MODIFIER	NA19067.hp1 NA19067.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0153 a0001c0001t0001g0153	1	276	0.0036	-1	c.-16 others(11): Show c.-162-13533delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124008215	CT CT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0137 a0001c0001t0001g0137	1	276	0.0036	-1	c.-16 others(11): Show c.-162-13137delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124014367	AT AT	A A	intron_variant intron_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0198 a0001c0001t0002g0198	1	276	0.0036	-1	c.-16 others(10): Show c.-162-6987delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124014979	CT CT	C C	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG02630.hp1 HG01515.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0012 a0001c0001t0002g0047 a0001c0001t0001g0012 a0001c0001t0002g0047	2	276	0.0073	-1	c.-16 others(10): Show c.-162-6363delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124015388	CT CT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02559.hp1 HG02922.hp2 others(3): Show HG01884.hp1 HG02559.hp1 HG02922.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0081 a0001c0001t0001g0194 a0001c0001t0001g0199 others(3): Show a0001c0001t0001g0081 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0206 a0001c0001t0001g0267 a0001c0001t0002g0045	6	276	0.0217	-1	c.-16 others(10): Show c.-162-5965delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124017550	GA GA	G G	intron_variant intron_variant	MODIFIER	NA18981.hp2 NA18988.hp1 NA18989.hp1 others(2): Show NA18981.hp2 NA18988.hp1 NA18989.hp1 NA19011.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 others(2): Show a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0251 a0001c0001t0001g0263	5	276	0.0181	-1	c.-16 others(10): Show c.-162-3810delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124018872	AT AT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0004 a0004c0006 a0001c0001 a0003c0004 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0003c0004t0001 a0004c0006t0001	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0003c0004t0001g0255 a0004c0006t0001g0226	82	276	0.2971	-1	c.-16 others(10): Show c.-162-2493delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124019052	CT CT	C C	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG02165.hp2 HG02976.hp2 others(2): Show HG01257.hp2 HG02165.hp2 HG02976.hp2 HG03831.hp2 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0111 a0001c0001t0001g0179 a0001c0001t0002g0020 others(2): Show a0001c0001t0001g0111 a0001c0001t0001g0179 a0001c0001t0002g0020 a0001c0001t0002g0041 a0001c0001t0004g0174	5	276	0.0181	-1	c.-16 others(10): Show c.-162-2293delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124021682	AT AT	A A	intron_variant intron_variant	MODIFIER	NA19077.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0270 a0001c0001t0001g0270	1	276	0.0036	-1	c.-98 others(8): Show c.-98+257delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124022305	AG AG	A A	intron_variant intron_variant	MODIFIER	NA19077.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0270 a0001c0001t0001g0270	1	276	0.0036	-1	c.-97 others(8): Show c.-97-224delG		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124022370	CA CA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(249): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0003 a0001c0007 others(3): Show a0001c0001 a0001c0003 a0001c0007 a0002c0005 a0003c0004 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0003t0001 a0001c0007t0001 a0002c0005t0007 a0003c0004t0001 a0004c0006t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(249): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0005t0007g0083 a0003c0004t0001g0255 a0004c0006t0001g0226	252	276	0.9130	-1	c.-97 others(8): Show c.-97-145delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124024374	AT AT	A A	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0078 a0001c0003t0001g0078	1	276	0.0036	-1	c.45- others(8): Show c.45-1456delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124024915	GC GC	G G	intron_variant intron_variant	MODIFIER	NA18954.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0227 a0001c0001t0001g0227	1	276	0.0036	-1	c.45- others(7): Show c.45-923delC		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124026885	AT AT	A A	intron_variant intron_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	276	0.0036	-1	c.123 others(8): Show c.123+969delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124028822	AT AT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0026 a0001c0001t0002g0026	1	276	0.0036	-1	c.124 others(9): Show c.124-2128delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124028990	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19065.hp2 NA19240.hp2 NA19065.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0003 a0001c0007t0001 a0001c0001t0003 a0001c0007t0001	a0001c0001t0003g0106 a0001c0007t0001g0165 a0001c0001t0003g0106 a0001c0007t0001g0165	2	276	0.0073	-1	c.124 others(9): Show c.124-1970delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34					chrX	TogoVar
STAG2_chrX_123956706_124107656	124029787	AG AG	A A	intron_variant intron_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0238 a0001c0001t0001g0238	1	276	0.0036	-1	c.124 others(9): Show c.124-1170delG		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124029870	GT GT	G G	intron_variant intron_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	276	0.0036	-1	c.124 others(9): Show c.124-1087delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124029922	AG AG	A A	intron_variant intron_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	276	0.0036	-1	c.124 others(9): Show c.124-1036delG		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124029939	AT AT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	276	0.0036	-1	c.124 others(9): Show c.124-1015delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124030338	GT GT	G G	intron_variant intron_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0226 a0004c0006t0001g0226	1	276	0.0036	-1	c.124 others(8): Show c.124-618delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124031550	TG TG	T T	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0257 a0001c0001t0001g0257	1	276	0.0036	-1	c.288 others(8): Show c.288+426delG		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34					chrX	TogoVar
STAG2_chrX_123956706_124107656	124033186	CT CT	C C	intron_variant intron_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0238 a0001c0001t0001g0238	1	276	0.0036	-1	c.288 others(9): Show c.288+2065delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124038750	TA TA	T T	intron_variant intron_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0248 a0001c0001t0001g0248	1	276	0.0036	-1	c.385 others(9): Show c.385+1133delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124039640	CT CT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp2 HG00558.hp2 others(185): Show HG00140.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0007 a0002c0005 others(2): Show a0001c0001 a0001c0007 a0002c0005 a0003c0004 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0007t0001 a0002c0005t0007 a0003c0004t0001 a0004c0006t0001	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(185): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0023 a0001c0001t0002g0050 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0007t0001g0165 a0002c0005t0007g0083 a0003c0004t0001g0255 a0004c0006t0001g0226	188	276	0.6812	-1	c.385 others(9): Show c.385+2032delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124040854	CT CT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02258.hp1 HG02976.hp1 others(1): Show HG02257.hp2 HG02258.hp1 HG02976.hp1 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0081 a0001c0001t0001g0189 a0001c0001t0001g0190 others(1): Show a0001c0001t0001g0081 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0004g0003	4	276	0.0145	-1	c.386 others(9): Show c.386-1695delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124041218	AT AT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG00621.hp1 others(78): Show HG00438.hp2 HG00558.hp1 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01361.hp1 HG01496.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0003c0004 others(1): Show a0001c0001 a0001c0002 a0003c0004 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0002t0001 a0003c0004t0001 a0004c0006t0001	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0077 others(78): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0090 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0070 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0027 a0001c0001t0010g0164 a0001c0002t0001g0069 a0003c0004t0001g0255 a0004c0006t0001g0226	81	276	0.2935	-1	c.386 others(9): Show c.386-1336delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124043729	TA TA	T T	intron_variant intron_variant	MODIFIER	NA19089.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0241 a0001c0001t0001g0241	1	276	0.0036	-1	c.462 others(9): Show c.462+1089delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124047596	GT GT	G G	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	276	0.0254	-1	c.819 others(7): Show c.819+96delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124050634	TA TA	T T	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	276	0.0036	-1	c.101 others(9): Show c.1017+335delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124051099	CT CT	C C	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG01069.hp1 NA18969.hp1 NA18974.hp1 others(2): Show HG01069.hp1 NA18969.hp1 NA18974.hp1 NA19003.hp2 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0001 a0001c0001t0002 a0001c0001t0009	a0001c0001t0001g0134 a0001c0001t0001g0224 a0001c0001t0001g0241 others(2): Show a0001c0001t0001g0134 a0001c0001t0001g0224 a0001c0001t0001g0241 a0001c0001t0002g0021 a0001c0001t0009g0139	5	276	0.0181	-1	c.101 others(7): Show c.1018-3delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124052345	TC TC	T T	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0224 a0001c0001t0001g0224	1	276	0.0036	-1	c.119 others(9): Show c.1196+955delC		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124052938	TC TC	T T	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0224 a0001c0001t0001g0224	1	276	0.0036	-1	c.119 others(10): Show c.1196+1547delC		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124053454	AT AT	A A	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01884.hp2 HG02630.hp2 others(7): Show HG01496.hp1 HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0001t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(7): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	10	276	0.0362	-1	c.119 others(10): Show c.1196+2072delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124056455	TG TG	T T	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0028 a0001c0001t0002g0028	1	276	0.0036	-1	c.130 others(9): Show c.1304+223delG		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124056896	CT CT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(173): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp1 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp2 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18960.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18968.hp2 NA18969.hp1 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19064.hp2 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0007 others(1): Show a0001c0001 a0001c0003 a0001c0007 a0002c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0003t0001 a0001c0007t0001 a0002c0005t0007	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 others(173): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0005t0007g0083	176	276	0.6377	-1	c.130 others(9): Show c.1304+673delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124058154	CT CT	C C	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG02109.hp1 HG02809.hp2 others(3): Show HG01361.hp1 HG02109.hp1 HG02809.hp2 HG03540.hp2 NA18941.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 others(3): Show a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 a0001c0001t0001g0249 a0001c0001t0001g0266 a0001c0001t0001g0268	6	276	0.0217	-1	c.141 others(9): Show c.1416+198delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124060887	TC TC	T T	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0255 a0003c0004t0001g0255	1	276	0.0036	-1	c.141 others(9): Show c.1417-334delC		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124061417	CT CT	C C	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0255 a0003c0004t0001g0255	1	276	0.0036	-1	c.153 others(8): Show c.1534+80delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124061743	CT CT	C C	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(72): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01496.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02135.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02615.hp2 HG02698.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03139.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18968.hp1 NA18970.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19043.hp1 NA19055.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0006 a0001c0001 a0001c0002 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0002t0001 a0004c0006t0001	a0001c0001t0001g0005 a0001c0001t0001g0066 a0001c0001t0001g0072 others(72): Show a0001c0001t0001g0005 a0001c0001t0001g0066 a0001c0001t0001g0072 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0113 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0008g0001 a0001c0001t0010g0164 a0001c0002t0001g0069 a0004c0006t0001g0226	75	276	0.2717	-1	c.153 others(7): Show c.1535-3delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124061852	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA18969.hp2 NA18969.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0255 a0003c0004t0001g0255	1	276	0.0036	-1	c.161 others(5): Show c.1619delG	p.Gly others(5): Show p.Gly540fs	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/35	1932/6179	1619/3807	540/1268	INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124062690	AT AT	A A	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0255 a0003c0004t0001g0255	1	276	0.0036	-1	c.163 others(9): Show c.1639-203delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124063390	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0255 a0003c0004t0001g0255	1	276	0.0036	-1	c.182 others(9): Show c.1821+186delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34					chrX	TogoVar
STAG2_chrX_123956706_124107656	124066143	AT AT	A A	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG00140.hp1 HG00597.hp1 HG00609.hp1 others(50): Show HG00140.hp1 HG00597.hp1 HG00609.hp1 HG01175.hp1 HG01257.hp2 HG01346.hp1 HG01361.hp1 HG01496.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02257.hp2 HG02273.hp2 HG02451.hp1 HG02572.hp1 HG02622.hp1 HG02683.hp1 HG02698.hp1 HG03017.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18969.hp1 NA18969.hp2 NA18975.hp2 NA18981.hp2 NA18983.hp1 NA18990.hp1 NA18999.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19077.hp2 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 a0001c0003t0001 a0003c0004t0001	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(50): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0190 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0215 a0001c0001t0001g0248 a0001c0001t0001g0251 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0057 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0069 a0001c0003t0001g0008 a0003c0004t0001g0255	53	276	0.1920	-1	c.209 others(7): Show c.2097-5delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124068034	CA CA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02818.hp2 HG02976.hp2 HG03490.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(45): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0159 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0009g0139	48	276	0.1739	-1	c.226 others(9): Show c.2266-518delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124069292	TG TG	T T	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	276	0.0036	-1	c.235 others(9): Show c.2358+639delG		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124069833	CA CA	C C	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA19067.hp1 NA18948.hp1 NA19067.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0112 a0001c0001t0001g0153 a0001c0001t0001g0112 a0001c0001t0001g0153	2	276	0.0073	-1	c.235 others(10): Show c.2358+1178delA		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34					chrX	TogoVar
STAG2_chrX_123956706_124107656	124070119	TC TC	T T	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	276	0.0036	-1	c.235 others(10): Show c.2359-1027delC		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124071128	CT CT	C C	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG01257.hp2 HG01943.hp1 HG02976.hp1 others(1): Show HG01257.hp2 HG01943.hp1 HG02976.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0087 a0001c0001t0001g0101 a0001c0001t0002g0041 others(1): Show a0001c0001t0001g0087 a0001c0001t0001g0101 a0001c0001t0002g0041 a0001c0001t0004g0003	4	276	0.0145	-1	c.235 others(7): Show c.2359-7delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34				INFO_REALIGN_3_PRIME	chrX	TogoVar
STAG2_chrX_123956706_124107656	124072873	CT CT	C C	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0184 a0001c0001t0001g0184	1	276	0.0036	-1	c.253 others(10): Show c.2533+1560delT		STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34				INFO_REALIGN_3_PRIME	chrX	TogoVar

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