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geneid	10735
ensemblid	ENSG00000101972.20
hgncid	11355
symbol	STAG2
name	STAG2 cohesin complex component
refseq_nuc	NM_001042750.2
refseq_prot	NP_001036215.1
ensembl_nuc	ENST00000371145.8
ensembl_prot	ENSP00000360187.4
mane_status	MANE Select
chr	chrX
start	123961706
end	124102656
strand	+
ver	v1.2
region	chrX:123961706-124102656
region5000	chrX:123956706-124107656
regionname0	STAG2_chrX_123961706_124102656
regionname5000	STAG2_chrX_123956706_124107656

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	1268	273	70	44	120	7	30	95	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0002	0/0	574	1	0	0	1	0	0	1	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0003	0/0	679	1	0	0	1	0	0	1	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0004	0/0	659	1	0	0	1	0	0	1	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	3807	267	66	43	119	7	30	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
c0002	0/0	3807	3	2	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
c0003	0/0	3807	2	2	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
c0004	0/0	3806	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
c0005	0/0	3815	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
c0006	0/0	3808	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
c0007	0/0	3807	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	2373	209	57	34	96	2	18	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0002	0/0	2372	47	2	7	21	5	12	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0003	0/0	2373	5	5	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0004	0/0	2374	4	4	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0005	0/0	2372	3	0	0	3	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0006	0/0	2371	3	1	2	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0007	0/0	2373	2	0	0	2	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0008	0/0	2374	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0009	0/0	2372	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
t0010	0/0	2368	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0002	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0003	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0004	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0005	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0006	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0007	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0008	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0009	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0010	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0011	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0012	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0013	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0014	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0015	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0016	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0017	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0018	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0019	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0020	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0021	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0022	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0023	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0024	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0025	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0026	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0027	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0028	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0029	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0030	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0031	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0032	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0033	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0034	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0035	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0036	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0037	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0038	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0039	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0040	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0041	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0042	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0043	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0044	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0045	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0046	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0047	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0048	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0049	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0050	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0051	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0052	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0053	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0054	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0055	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0056	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0057	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0058	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0059	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0060	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0061	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0062	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0063	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0064	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0065	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0066	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0067	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0068	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0069	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0070	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0071	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0072	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0073	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0074	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0075	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0076	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0077	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0078	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0079	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0080	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0081	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0082	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0083	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0084	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0085	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0086	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0087	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0088	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0089	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0090	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0091	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0092	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0093	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0094	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0095	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0096	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0097	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0098	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0099	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0100	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0101	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0102	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0103	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0104	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0105	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0106	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0107	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0108	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0109	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0110	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0111	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0112	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0113	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0114	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0115	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0116	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0117	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0118	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0119	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0120	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0121	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0122	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0123	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0124	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0125	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0126	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0127	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0128	0/1	1	0	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0129	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0130	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0131	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0132	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0133	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0134	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0135	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0136	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0137	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0138	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0139	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0140	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0141	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0142	1/0	1	0	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0143	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0144	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0145	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0146	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0147	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0148	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0149	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0150	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0151	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0152	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0153	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0154	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0155	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0156	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0157	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0158	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0159	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0160	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0161	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0162	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0163	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0164	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0165	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0166	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0167	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0168	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0169	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0170	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0171	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0172	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0173	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0174	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0175	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0176	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0177	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0178	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0179	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0180	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0181	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0182	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0183	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0184	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0185	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0186	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0187	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0188	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0189	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0190	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0191	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0192	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0193	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0194	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0195	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0196	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0197	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0198	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0199	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0200	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0201	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0202	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0203	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0204	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0205	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0206	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0207	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0208	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0209	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0210	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0211	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0212	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0213	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0214	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0215	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0216	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0217	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0218	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0219	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0220	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0221	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0222	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0223	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0224	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0225	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0226	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0227	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0228	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0229	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0230	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0231	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0232	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0233	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0234	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0235	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0236	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0237	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0238	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0239	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0240	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0241	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0242	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0243	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0244	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0245	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0246	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0247	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0248	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0249	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0250	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0251	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0252	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0253	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0254	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0255	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0256	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0257	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0258	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0259	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0260	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0261	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0262	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0263	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0264	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0265	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0266	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0267	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0268	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0269	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0270	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0271	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0272	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0273	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0274	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0275	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
g0276	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	3807	267	66	43	119	7	30	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0002	0/0	3807	3	2	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0003	0/0	3807	2	2	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0007	0/0	3807	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0002c0004	0/0	3806	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0003c0006	0/0	3808	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0004c0005	0/0	3815	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	6179	201	53	33	93	2	18	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0002	0/0	6178	47	2	7	21	5	12	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0003	0/0	6179	5	5	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0004	0/0	6180	4	4	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0005	0/0	6178	3	0	0	3	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0006	0/0	6177	3	1	2	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0007	0/0	6179	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0008	0/0	6180	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0009	0/0	6178	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0001t0010	0/0	6174	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0002t0001	0/0	6179	3	2	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0003t0001	0/0	6179	2	2	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0001c0007t0001	0/0	6179	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0002c0004t0001	0/0	6178	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0003c0006t0001	0/0	6180	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656
a0004c0005t0007	0/0	6187	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	copy fasta	chrX	123956706	124107656

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0004	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0005	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0006	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0007	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0012	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0013	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0014	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0015	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0016	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0017	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0043	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0052	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0053	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0054	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0055	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0056	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0065	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0066	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0067	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0068	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0071	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0072	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0073	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0074	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0076	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0077	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0079	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0080	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0081	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0082	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0084	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0085	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0086	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0087	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0088	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0089	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0090	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0091	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0092	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0093	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0094	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0095	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0096	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0097	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0098	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0099	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0100	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0101	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0102	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0103	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0104	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0105	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0107	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0108	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0109	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0110	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0111	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0112	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0113	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0114	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0115	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0116	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0117	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0118	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0119	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0120	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0121	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0122	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0123	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0124	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0125	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0126	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0127	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0128	0/1	1	0	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0129	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0130	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0131	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0132	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0133	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0134	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0135	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0137	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0138	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0140	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0142	1/0	1	0	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0143	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0145	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0146	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0147	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0148	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0149	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0150	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0152	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0153	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0154	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0155	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0156	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0157	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0158	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0159	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0160	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0161	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0162	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0163	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0166	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0167	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0168	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0169	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0170	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0171	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0172	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0173	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0176	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0177	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0178	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0179	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0180	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0181	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0182	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0183	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0184	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0186	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0187	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0188	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0189	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0190	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0191	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0192	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0194	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0195	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0196	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0197	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0199	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0200	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0201	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0202	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0203	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0204	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0205	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0206	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0207	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0209	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0211	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0212	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0213	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0214	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0215	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0217	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0218	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0219	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0220	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0221	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0223	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0224	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0225	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0227	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0228	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0229	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0230	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0231	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0232	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0233	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0234	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0235	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0236	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0237	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0238	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0239	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0240	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0241	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0242	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0243	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0245	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0246	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0247	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0248	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0249	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0250	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0251	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0252	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0253	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0254	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0256	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0257	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0258	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0260	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0261	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0262	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0263	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0264	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0265	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0266	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0267	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0268	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0270	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0272	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0273	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0274	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0275	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0001g0276	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0002	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0011	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0018	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0020	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0021	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0022	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0023	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0024	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0025	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0026	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0028	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0029	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0030	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0031	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0032	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0033	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0035	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0036	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0037	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0038	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0039	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0040	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0041	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0042	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0044	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0045	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0046	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0047	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0048	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0049	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0050	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0051	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0057	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0059	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0060	0/0	1	0	0	0	1	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0061	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0062	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0070	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0136	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0144	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0151	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0185	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0193	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0198	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0222	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0259	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0002g0271	0/0	1	0	0	0	0	1	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0003g0106	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0003g0208	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0003g0210	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0003g0216	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0003g0244	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0004g0003	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0004g0174	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0004g0175	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0004g0269	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0005g0019	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0005g0027	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0005g0034	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0006g0009	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0006g0010	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0006g0058	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0007g0141	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0008g0001	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0009g0139	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0001t0010g0164	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0002t0001g0063	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0002t0001g0064	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0002t0001g0069	0/0	1	0	1	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0003t0001g0008	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0003t0001g0078	0/0	1	1	0	0	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0001c0007t0001g0165	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0002c0004t0001g0255	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0003c0006t0001g0226	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
a0004c0005t0007g0083	0/0	1	0	0	1	0	0	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0002	g0023	EUR	GBR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00280	hp1	a0001	c0001	t0002	g0059	EUR	FIN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00438	hp1	a0001	c0001	t0002	g0185	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00438	hp2	a0001	c0001	t0001	g0264	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00558	hp1	a0001	c0001	t0002	g0070	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00558	hp2	a0001	c0001	t0001	g0274	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00597	hp1	a0001	c0001	t0005	g0019	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00597	hp2	a0001	c0001	t0001	g0089	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00609	hp1	a0001	c0001	t0002	g0037	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00621	hp1	a0001	c0001	t0001	g0217	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00639	hp1	a0001	c0001	t0001	g0137	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00639	hp2	a0001	c0001	t0001	g0219	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00642	hp1	a0001	c0001	t0001	g0080	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00673	hp1	a0001	c0001	t0001	g0007	EAS	CHS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00735	hp1	a0001	c0001	t0001	g0159	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00735	hp2	a0001	c0001	t0002	g0026	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG00738	hp1	a0001	c0001	t0001	g0131	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01069	hp1	a0001	c0001	t0009	g0139	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01074	hp1	a0001	c0001	t0001	g0140	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01081	hp1	a0001	c0001	t0001	g0242	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01081	hp2	a0001	c0001	t0001	g0099	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01099	hp1	a0001	c0001	t0001	g0107	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01106	hp1	a0001	c0001	t0001	g0004	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01109	hp1	a0001	c0001	t0001	g0133	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01167	hp1	a0001	c0001	t0001	g0086	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01175	hp1	a0001	c0001	t0001	g0215	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01175	hp2	a0001	c0001	t0002	g0062	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01192	hp1	a0001	c0001	t0001	g0093	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01243	hp1	a0001	c0001	t0001	g0067	AMR	PUR	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01255	hp1	a0001	c0001	t0002	g0144	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01256	hp1	a0001	c0001	t0001	g0124	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01257	hp1	a0001	c0001	t0001	g0256	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01257	hp2	a0001	c0001	t0002	g0041	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01258	hp1	a0001	c0001	t0001	g0231	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01261	hp1	a0001	c0001	t0001	g0119	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01346	hp1	a0001	c0001	t0006	g0010	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01346	hp2	a0001	c0001	t0001	g0236	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01358	hp1	a0001	c0001	t0001	g0098	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01361	hp1	a0001	c0001	t0001	g0268	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01361	hp2	a0001	c0001	t0001	g0102	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01433	hp1	a0001	c0001	t0001	g0161	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01496	hp1	a0001	c0002	t0001	g0069	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01496	hp2	a0001	c0001	t0001	g0055	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01515	hp1	a0001	c0001	t0002	g0047	EUR	IBS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01517	hp1	a0001	c0001	t0001	g0272	EUR	IBS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01517	hp2	a0001	c0001	t0002	g0036	EUR	IBS	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01884	hp1	a0001	c0001	t0001	g0194	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01884	hp2	a0001	c0001	t0001	g0178	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01891	hp1	a0001	c0001	t0002	g0151	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01891	hp2	a0001	c0001	t0001	g0073	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01928	hp1	a0001	c0001	t0001	g0182	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01934	hp1	a0001	c0001	t0001	g0115	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01943	hp1	a0001	c0001	t0001	g0087	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01952	hp1	a0001	c0001	t0001	g0173	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01993	hp1	a0001	c0001	t0002	g0031	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01993	hp2	a0001	c0001	t0001	g0150	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02015	hp1	a0001	c0001	t0001	g0006	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02027	hp1	a0001	c0001	t0001	g0154	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02040	hp1	a0001	c0001	t0001	g0129	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02055	hp1	a0001	c0001	t0003	g0244	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02056	hp1	a0001	c0001	t0002	g0044	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02071	hp1	a0001	c0001	t0001	g0265	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02074	hp1	a0001	c0001	t0001	g0261	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02080	hp1	a0001	c0001	t0001	g0186	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02080	hp2	a0001	c0001	t0002	g0057	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02083	hp1	a0001	c0001	t0001	g0079	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02129	hp1	a0001	c0001	t0001	g0192	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02132	hp1	a0001	c0001	t0002	g0040	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02135	hp1	a0001	c0001	t0001	g0113	EAS	KHV	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02145	hp1	a0001	c0001	t0001	g0204	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02148	hp1	a0001	c0001	t0001	g0100	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02148	hp2	a0001	c0001	t0002	g0018	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02165	hp1	a0001	c0001	t0001	g0201	EAS	CDX	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02165	hp2	a0001	c0001	t0001	g0111	EAS	CDX	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02257	hp1	a0001	c0001	t0001	g0160	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02257	hp2	a0001	c0001	t0001	g0190	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02258	hp1	a0001	c0001	t0001	g0189	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02273	hp1	a0001	c0001	t0001	g0092	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02273	hp2	a0001	c0001	t0006	g0058	AMR	PEL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02280	hp1	a0001	c0001	t0004	g0269	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02280	hp2	a0001	c0001	t0001	g0171	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02451	hp1	a0001	c0001	t0001	g0016	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02451	hp2	a0001	c0001	t0001	g0147	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02572	hp1	a0001	c0001	t0001	g0203	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02602	hp1	a0001	c0001	t0001	g0126	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02615	hp1	a0001	c0001	t0001	g0074	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02615	hp2	a0001	c0001	t0003	g0216	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02622	hp1	a0001	c0001	t0001	g0014	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02622	hp2	a0001	c0001	t0001	g0138	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02630	hp1	a0001	c0001	t0001	g0012	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02630	hp2	a0001	c0001	t0001	g0013	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02647	hp1	a0001	c0001	t0001	g0168	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02683	hp1	a0001	c0001	t0002	g0222	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02683	hp2	a0001	c0001	t0002	g0136	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02698	hp1	a0001	c0001	t0001	g0183	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02717	hp1	a0001	c0001	t0001	g0077	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02723	hp1	a0001	c0001	t0001	g0188	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02723	hp2	a0001	c0001	t0001	g0211	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02735	hp1	a0001	c0001	t0001	g0152	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02738	hp1	a0001	c0001	t0002	g0271	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02809	hp1	a0001	c0001	t0001	g0166	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02809	hp2	a0001	c0001	t0001	g0177	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02818	hp1	a0001	c0001	t0001	g0162	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02818	hp2	a0001	c0001	t0004	g0175	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02886	hp1	a0001	c0003	t0001	g0078	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02886	hp2	a0001	c0001	t0001	g0084	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02895	hp1	a0001	c0001	t0001	g0191	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02896	hp1	a0001	c0001	t0002	g0002	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02896	hp2	a0001	c0001	t0001	g0169	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02897	hp1	a0001	c0001	t0001	g0167	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02897	hp2	a0001	c0001	t0001	g0200	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02922	hp1	a0001	c0001	t0003	g0208	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02922	hp2	a0001	c0001	t0001	g0206	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02965	hp1	a0001	c0001	t0001	g0090	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02976	hp1	a0001	c0001	t0004	g0003	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02976	hp2	a0001	c0001	t0004	g0174	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03017	hp1	a0001	c0001	t0001	g0202	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03098	hp1	a0001	c0001	t0001	g0068	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03130	hp1	a0001	c0001	t0001	g0143	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03139	hp1	a0001	c0001	t0001	g0072	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03195	hp1	a0001	c0001	t0003	g0210	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03195	hp2	a0001	c0001	t0001	g0243	AFR	ESN	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03209	hp1	a0001	c0001	t0001	g0071	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03225	hp1	a0001	c0002	t0001	g0064	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03239	hp1	a0001	c0001	t0001	g0240	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03239	hp2	a0001	c0001	t0001	g0117	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03486	hp1	a0001	c0001	t0001	g0187	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03486	hp2	a0001	c0001	t0001	g0125	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03490	hp1	a0001	c0001	t0002	g0024	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03491	hp1	a0001	c0001	t0002	g0030	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03491	hp2	a0001	c0001	t0001	g0196	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03492	hp1	a0001	c0001	t0002	g0035	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03540	hp1	a0001	c0001	t0001	g0015	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03540	hp2	a0001	c0001	t0001	g0118	AFR	GWD	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03579	hp1	a0001	c0001	t0001	g0076	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03654	hp1	a0001	c0001	t0001	g0230	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03669	hp1	a0001	c0001	t0001	g0054	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03669	hp2	a0001	c0001	t0002	g0029	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03688	hp1	a0001	c0001	t0001	g0052	SAS	STU	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03704	hp1	a0001	c0001	t0001	g0158	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03704	hp2	a0001	c0001	t0002	g0025	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03710	hp1	a0001	c0001	t0002	g0038	SAS	PJL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03831	hp1	a0001	c0001	t0001	g0252	SAS	BEB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03831	hp2	a0001	c0001	t0002	g0020	SAS	BEB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03942	hp1	a0001	c0001	t0002	g0042	SAS	BEB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG04115	hp1	a0001	c0001	t0002	g0028	SAS	STU	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG04184	hp1	a0001	c0001	t0001	g0235	SAS	BEB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG04184	hp2	a0001	c0001	t0001	g0149	SAS	BEB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG04199	hp1	a0001	c0001	t0001	g0247	SAS	STU	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG04204	hp1	a0001	c0001	t0001	g0257	SAS	STU	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG04228	hp1	a0001	c0001	t0001	g0103	SAS	STU	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18522	hp1	a0001	c0001	t0001	g0172	AFR	YRI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18612	hp1	a0001	c0001	t0001	g0181	EAS	CHB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18747	hp1	a0001	c0001	t0001	g0132	EAS	CHB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18906	hp1	a0001	c0002	t0001	g0063	AFR	YRI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18906	hp2	a0001	c0001	t0001	g0091	AFR	YRI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18940	hp1	a0001	c0001	t0001	g0135	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18941	hp1	a0001	c0001	t0001	g0249	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18941	hp2	a0004	c0005	t0007	g0083	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18943	hp1	a0001	c0001	t0001	g0205	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18944	hp1	a0001	c0001	t0005	g0034	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18945	hp1	a0001	c0001	t0001	g0253	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18947	hp1	a0001	c0001	t0001	g0228	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18947	hp2	a0001	c0001	t0001	g0145	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18948	hp1	a0001	c0001	t0001	g0112	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18949	hp1	a0001	c0001	t0001	g0258	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18949	hp2	a0001	c0001	t0001	g0155	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18950	hp1	a0001	c0001	t0002	g0193	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18950	hp2	a0001	c0001	t0001	g0121	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18952	hp1	a0001	c0001	t0002	g0033	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18954	hp1	a0001	c0001	t0001	g0096	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18954	hp2	a0001	c0001	t0001	g0227	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18957	hp1	a0001	c0001	t0001	g0095	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18957	hp2	a0001	c0001	t0001	g0218	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18959	hp1	a0001	c0001	t0001	g0180	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18960	hp1	a0001	c0001	t0005	g0027	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18961	hp1	a0001	c0001	t0001	g0248	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18962	hp1	a0001	c0001	t0001	g0229	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18964	hp1	a0001	c0001	t0001	g0101	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18964	hp2	a0001	c0001	t0001	g0239	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18965	hp1	a0001	c0001	t0008	g0001	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18966	hp1	a0001	c0001	t0001	g0275	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18967	hp1	a0001	c0001	t0001	g0056	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18968	hp1	a0001	c0001	t0001	g0262	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18968	hp2	a0001	c0001	t0001	g0122	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18969	hp1	a0001	c0001	t0002	g0021	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18969	hp2	a0002	c0004	t0001	g0255	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18970	hp1	a0001	c0001	t0001	g0232	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18971	hp1	a0001	c0001	t0001	g0156	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18974	hp1	a0001	c0001	t0001	g0224	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18975	hp1	a0001	c0001	t0001	g0273	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18975	hp2	a0001	c0001	t0002	g0048	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18977	hp1	a0001	c0001	t0001	g0170	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18979	hp1	a0001	c0001	t0002	g0050	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18979	hp2	a0001	c0001	t0001	g0276	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18981	hp1	a0001	c0001	t0001	g0130	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18981	hp2	a0001	c0001	t0001	g0251	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18982	hp1	a0001	c0001	t0001	g0108	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18983	hp1	a0001	c0001	t0002	g0032	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18984	hp1	a0001	c0001	t0001	g0179	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18986	hp1	a0001	c0001	t0001	g0212	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18988	hp1	a0001	c0001	t0001	g0234	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18989	hp1	a0001	c0001	t0001	g0263	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18990	hp1	a0001	c0001	t0002	g0039	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18991	hp1	a0001	c0001	t0001	g0146	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18991	hp2	a0001	c0001	t0001	g0005	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18994	hp1	a0001	c0001	t0001	g0114	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18995	hp1	a0001	c0001	t0001	g0082	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18999	hp1	a0001	c0001	t0001	g0184	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18999	hp2	a0001	c0001	t0001	g0085	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19000	hp1	a0001	c0001	t0002	g0051	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19003	hp1	a0001	c0001	t0001	g0260	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19003	hp2	a0001	c0001	t0001	g0134	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19004	hp1	a0001	c0001	t0001	g0213	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19005	hp1	a0001	c0001	t0001	g0214	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19006	hp1	a0001	c0001	t0002	g0198	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19007	hp1	a0001	c0001	t0001	g0097	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19009	hp1	a0001	c0001	t0001	g0176	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19011	hp1	a0001	c0001	t0001	g0233	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19011	hp2	a0001	c0001	t0002	g0022	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19012	hp1	a0001	c0001	t0001	g0104	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19043	hp1	a0001	c0001	t0001	g0066	AFR	LWK	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19055	hp1	a0001	c0001	t0001	g0238	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19056	hp1	a0001	c0001	t0001	g0120	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19058	hp1	a0001	c0001	t0001	g0266	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19060	hp1	a0001	c0001	t0001	g0246	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19062	hp1	a0001	c0001	t0001	g0163	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19063	hp1	a0001	c0001	t0001	g0221	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19064	hp1	a0001	c0001	t0001	g0250	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19064	hp2	a0001	c0001	t0002	g0259	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19065	hp1	a0001	c0001	t0001	g0195	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19065	hp2	a0001	c0007	t0001	g0165	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19066	hp1	a0001	c0001	t0001	g0075	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19067	hp1	a0001	c0001	t0001	g0153	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19068	hp1	a0001	c0001	t0007	g0141	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19070	hp1	a0001	c0001	t0001	g0157	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19077	hp1	a0001	c0001	t0002	g0046	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19077	hp2	a0001	c0001	t0001	g0270	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19079	hp1	a0001	c0001	t0001	g0110	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19080	hp1	a0001	c0001	t0001	g0225	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19080	hp2	a0001	c0001	t0001	g0105	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19081	hp1	a0001	c0001	t0001	g0081	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19081	hp2	a0001	c0001	t0001	g0267	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19082	hp1	a0001	c0001	t0002	g0049	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19083	hp1	a0001	c0001	t0002	g0045	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19085	hp1	a0001	c0001	t0001	g0109	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19086	hp1	a0001	c0001	t0001	g0220	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19087	hp1	a0001	c0001	t0001	g0088	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19087	hp2	a0001	c0001	t0002	g0011	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19088	hp1	a0001	c0001	t0001	g0116	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19089	hp1	a0001	c0001	t0001	g0241	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19090	hp1	a0001	c0001	t0001	g0043	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19090	hp2	a0001	c0001	t0001	g0197	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19091	hp1	a0003	c0006	t0001	g0226	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19240	hp1	a0001	c0001	t0001	g0209	AFR	YRI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA19240	hp2	a0001	c0001	t0003	g0106	AFR	YRI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20129	hp1	a0001	c0001	t0010	g0164	AFR	ASW	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20129	hp2	a0001	c0001	t0001	g0017	AFR	ASW	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20752	hp1	a0001	c0001	t0001	g0123	EUR	TSI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20805	hp1	a0001	c0001	t0002	g0060	EUR	TSI	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20905	hp1	a0001	c0001	t0001	g0127	SAS	GIH	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01123	hp1	a0001	c0001	t0001	g0223	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG01123	hp2	a0001	c0001	t0002	g0061	AMR	CLM	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02109	hp1	a0001	c0001	t0001	g0094	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02109	hp2	a0001	c0001	t0001	g0254	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02486	hp1	a0001	c0001	t0001	g0207	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02559	hp1	a0001	c0001	t0001	g0199	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG02559	hp2	a0001	c0001	t0001	g0053	AFR	ACB	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
HG03471	hp1	a0001	c0003	t0001	g0008	AFR	MSL	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA18955	hp1	a0001	c0001	t0001	g0245	EAS	JPT	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20300	hp1	a0001	c0001	t0006	g0009	AFR	USA	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA20300	hp2	a0001	c0001	t0001	g0065	AFR	USA	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA21309	hp1	a0001	c0001	t0001	g0148	AFR	LWK	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
NA21309	hp2	a0001	c0001	t0001	g0237	AFR	LWK	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0128	REF	REF	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0142	REF	REF	STAG2_chrX_123956706_124107656	STAG2	chrX	123956706	124107656

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:124061852	TG TG	T T	1	a0002 a0002	1	NA18969.hp2 NA18969.hp2	frameshift_variant	HIGH	c.1619delG c.1619delG	p.Gly540fs p.Gly540fs	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/35	1932/6179	1619/3807	540/1268	INFO_REALIGN_3_PRIME	chrX	124061852
chrX:124063987	G G	GAAGTCAA others(1): Show GAAGTCAAC	1	a0004 a0004	1	NA18941.hp2 NA18941.hp2	frameshift_variant	HIGH	c.1962_1969dupAAGTCA others(2): Show c.1962_1969dupAAGTCAAC	p.Leu657fs p.Leu657fs	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/35	2283/6179	1970/3807	657/1268	INFO_REALIGN_3_PRIME	chrX	124063987
chrX:124065879	G G	GA GA	1	a0003 a0003	1	NA19091.hp1 NA19091.hp1	frameshift_variant	HIGH	c.2031dupA c.2031dupA	p.Glu678fs p.Glu678fs	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/35	2345/6179	2032/3807	678/1268	INFO_REALIGN_3_PRIME	chrX	124065879

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:124051156	A A	G G	1	a0001c0007 a0001c0007	1	NA19065.hp2 NA19065.hp2	synonymous_variant	LOW	c.1053A>G c.1053A>G	p.Leu351Leu p.Leu351Leu	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	12/35	1366/6179	1053/3807	351/1268	chrX	124051156
chrX:124065932	C C	T T	1	a0001c0003 a0001c0003	2	HG02886.hp1 HG03471.hp1 HG02886.hp1 HG03471.hp1	synonymous_variant	LOW	c.2082C>T c.2082C>T	p.Ile694Ile p.Ile694Ile	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/35	2395/6179	2082/3807	694/1268	chrX	124065932
chrX:124090657	A A	G G	1	a0001c0002 a0001c0002	3	HG01496.hp1 HG03225.hp1 NA18906.hp1 HG01496.hp1 HG03225.hp1 NA18906.hp1	synonymous_variant	LOW	c.3360A>G c.3360A>G	p.Gln1120Gln p.Gln1120Gln	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	31/35	3673/6179	3360/3807	1120/1268	chrX	124090657

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:123961712	T T	TC TC	1	a0001c0001t0008 a0001c0001t0008	1	NA18965.hp1 NA18965.hp1	5_prime_UTR_variant	MODIFIER	c.-305dupC c.-305dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/35	60913	INFO_REALIGN_3_PRIME	chrX	123961712
chrX:124021376	G G	A A	2	a0001c0001t0007 a0004c0005t0007 a0001c0001t0007 a0004c0005t0007	2	NA18941.hp2 NA19068.hp1 NA18941.hp2 NA19068.hp1	5_prime_UTR_variant	MODIFIER	c.-153G>A c.-153G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/35	1252		chrX	124021376
chrX:124100883	T T	TA TA	1	a0001c0001t0004 a0001c0001t0004	4	HG02280.hp1 HG02818.hp2 HG02976.hp1 others(1): Show HG02280.hp1 HG02818.hp2 HG02976.hp1 HG02976.hp2	3_prime_UTR_variant	MODIFIER	c.301dupA c.301dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	302	INFO_REALIGN_3_PRIME	chrX	124100883
chrX:124100883	TA TA	T T	2	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	50	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(47): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01255.hp1 HG01257.hp2 HG01515.hp1 HG01517.hp2 HG01891.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02683.hp1 HG02683.hp2 HG02738.hp1 HG02896.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18950.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19006.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA20805.hp1	3_prime_UTR_variant	MODIFIER	c.301delA c.301delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	301	INFO_REALIGN_3_PRIME	chrX	124100883
chrX:124100883	TAA TAA	T T	1	a0001c0001t0006 a0001c0001t0006	3	HG01346.hp1 HG02273.hp2 NA20300.hp1 HG01346.hp1 HG02273.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.300_301delAA c.300_301delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	300	INFO_REALIGN_3_PRIME	chrX	124100883
chrX:124100892	A A	C C	1	a0001c0001t0003 a0001c0001t0003	5	HG02055.hp1 HG02615.hp2 HG02922.hp1 others(2): Show HG02055.hp1 HG02615.hp2 HG02922.hp1 HG03195.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.295A>C c.295A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	295		chrX	124100892
chrX:124100894	AAAAAC AAAAAC	A A	1	a0001c0001t0010 a0001c0001t0010	1	NA20129.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.302_306delCAAAA c.302_306delCAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	302	INFO_REALIGN_3_PRIME	chrX	124100894
chrX:124101171	A A	G G	1	a0001c0001t0005 a0001c0001t0005	3	HG00597.hp1 NA18944.hp1 NA18960.hp1 HG00597.hp1 NA18944.hp1 NA18960.hp1	3_prime_UTR_variant	MODIFIER	c.574A>G c.574A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	574		chrX	124101171
chrX:124101605	TA TA	T T	1	a0001c0001t0009 a0001c0001t0009	1	HG01069.hp1 HG01069.hp1	3_prime_UTR_variant	MODIFIER	c.1013delA c.1013delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	35/35	1013	INFO_REALIGN_3_PRIME	chrX	124101605

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:123961869	CG CG	C C	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+16delG c.-163+16delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123961869
chrX:123961903	C C	T T	4	a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 others(1): Show a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276	4	HG00558.hp2 NA18966.hp1 NA18975.hp1 others(1): Show HG00558.hp2 NA18966.hp1 NA18975.hp1 NA18979.hp2	intron_variant	MODIFIER	c.-163+47C>T c.-163+47C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123961903
chrX:123961966	AG AG	A A	2	a0001c0001t0002g0002 a0001c0001t0008g0001 a0001c0001t0002g0002 a0001c0001t0008g0001	2	HG02896.hp1 NA18965.hp1 HG02896.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+116delG c.-163+116delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123961966
chrX:123962026	T T	C C	1	a0001c0001t0004g0003 a0001c0001t0004g0003	1	HG02976.hp1 HG02976.hp1	intron_variant	MODIFIER	c.-163+170T>C c.-163+170T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123962026
chrX:123962174	TC TC	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+322delC c.-163+322delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123962174
chrX:123962339	GC GC	G G	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+485delC c.-163+485delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123962339
chrX:123962500	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.-163+644G>A c.-163+644G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123962500
chrX:123962605	TC TC	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+752delC c.-163+752delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123962605
chrX:123962697	C C	T T	1	a0001c0001t0001g0272 a0001c0001t0001g0272	1	HG01517.hp1 HG01517.hp1	intron_variant	MODIFIER	c.-163+841C>T c.-163+841C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123962697
chrX:123962735	TA TA	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+882delA c.-163+882delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123962735
chrX:123962854	T T	A A	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.-163+998T>A c.-163+998T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123962854
chrX:123963052	T T	TC TC	1	a0001c0001t0002g0271 a0001c0001t0002g0271	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-163+1198dupC c.-163+1198dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123963052
chrX:123963134	T T	TG TG	1	a0001c0001t0001g0270 a0001c0001t0001g0270	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.-163+1280dupG c.-163+1280dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123963134
chrX:123963373	A A	G G	1	a0001c0001t0004g0269 a0001c0001t0004g0269	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.-163+1517A>G c.-163+1517A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123963373
chrX:123963449	AT AT	A A	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+1597delT c.-163+1597delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123963449
chrX:123963488	G G	C C	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.-163+1632G>C c.-163+1632G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123963488
chrX:123963615	A A	AT AT	90	a0001c0001t0001g0005 a0001c0001t0001g0183 a0001c0001t0001g0184 others(87): Show a0001c0001t0001g0005 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0002 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0002c0004t0001g0255 a0003c0006t0001g0226	90	HG00438.hp1 HG00438.hp2 HG00621.hp1 others(87): Show HG00438.hp1 HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03486.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19086.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+1770dupT c.-163+1770dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123963615
chrX:123963615	AT AT	A A	4	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0008g0001 others(1): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0008g0001 a0001c0003t0001g0008	4	HG00673.hp1 HG02015.hp1 HG03471.hp1 others(1): Show HG00673.hp1 HG02015.hp1 HG03471.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+1770delT c.-163+1770delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123963615
chrX:123963732	C C	G G	1	a0001c0001t0001g0182 a0001c0001t0001g0182	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.-163+1876C>G c.-163+1876C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123963732
chrX:123964107	A A	T T	1	a0001c0001t0001g0181 a0001c0001t0001g0181	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.-163+2251A>T c.-163+2251A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123964107
chrX:123964250	C C	CA CA	52	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 others(49): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0185 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010	52	HG00140.hp1 HG00438.hp1 HG00597.hp1 others(49): Show HG00140.hp1 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02698.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18967.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19011.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+2407dupA c.-163+2407dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964250
chrX:123964250	CA CA	C C	5	a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 others(2): Show a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0008g0001 a0001c0003t0001g0008	5	HG01884.hp2 HG03471.hp1 NA18959.hp1 others(2): Show HG01884.hp2 HG03471.hp1 NA18959.hp1 NA18965.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-163+2407delA c.-163+2407delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964250
chrX:123964304	C C	T T	1	a0001c0001t0001g0268 a0001c0001t0001g0268	1	HG01361.hp1 HG01361.hp1	intron_variant	MODIFIER	c.-163+2448C>T c.-163+2448C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123964304
chrX:123964319	A A	G G	1	a0001c0001t0001g0177 a0001c0001t0001g0177	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.-163+2463A>G c.-163+2463A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123964319
chrX:123964448	G G	GT GT	1	a0001c0001t0001g0176 a0001c0001t0001g0176	1	NA19009.hp1 NA19009.hp1	intron_variant	MODIFIER	c.-163+2594dupT c.-163+2594dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964448
chrX:123964571	G G	T T	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+2715G>T c.-163+2715G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123964571
chrX:123964597	T T	C C	1	a0001c0001t0001g0186 a0001c0001t0001g0186	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.-163+2741T>C c.-163+2741T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123964597
chrX:123964654	TC TC	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+2801delC c.-163+2801delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964654
chrX:123964718	GT GT	G G	69	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 others(66): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0004g0003 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008	69	HG00140.hp1 HG00280.hp1 HG00558.hp1 others(66): Show HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01346.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01993.hp1 HG02056.hp1 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02723.hp1 HG02896.hp1 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18906.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19043.hp1 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+2875delT c.-163+2875delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964718
chrX:123964891	A A	G G	7	a0001c0001t0001g0005 a0001c0001t0001g0171 a0001c0001t0001g0172 others(4): Show a0001c0001t0001g0005 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267	7	HG01952.hp1 HG02071.hp1 HG02280.hp2 others(4): Show HG01952.hp1 HG02071.hp1 HG02280.hp2 NA18522.hp1 NA18991.hp2 NA19058.hp1 NA19081.hp2	intron_variant	MODIFIER	c.-163+3035A>G c.-163+3035A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123964891
chrX:123964960	C C	CT CT	66	a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 others(63): Show a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0186 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0004g0003 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	66	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(63): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01243.hp1 HG01257.hp2 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01952.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG03098.hp1 HG03209.hp1 HG03225.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18522.hp1 NA18906.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18968.hp1 NA18969.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18983.hp1 NA18989.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19043.hp1 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19090.hp1 NA20129.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-163+3122dupT c.-163+3122dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964960
chrX:123964960	C C	CTT CTT	3	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0190 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0190	3	HG01891.hp2 HG02257.hp2 HG03139.hp1 HG01891.hp2 HG02257.hp2 HG03139.hp1	intron_variant	MODIFIER	c.-163+3121_-163+312 others(6): Show c.-163+3121_-163+3122dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964960
chrX:123964960	CT CT	C C	4	a0001c0001t0001g0074 a0001c0001t0001g0191 a0001c0001t0001g0192 others(1): Show a0001c0001t0001g0074 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0008g0001	4	HG02129.hp1 HG02615.hp1 HG02895.hp1 others(1): Show HG02129.hp1 HG02615.hp1 HG02895.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+3122delT c.-163+3122delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964960
chrX:123964960	CTTTTTT CTTTTTT	C C	3	a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	3	HG01346.hp1 HG02273.hp2 NA20300.hp1 HG01346.hp1 HG02273.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+3117_-163+312 others(10): Show c.-163+3117_-163+3122delTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123964960
chrX:123965016	TC TC	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+3165delC c.-163+3165delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123965016
chrX:123965055	C C	T T	1	a0001c0007t0001g0165 a0001c0007t0001g0165	1	NA19065.hp2 NA19065.hp2	intron_variant	MODIFIER	c.-163+3199C>T c.-163+3199C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123965055
chrX:123965102	AC AC	A A	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+3250delC c.-163+3250delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123965102
chrX:123965257	A A	G G	1	a0001c0001t0010g0164 a0001c0001t0010g0164	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-163+3401A>G c.-163+3401A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123965257
chrX:123965411	C C	T T	1	a0001c0001t0001g0163 a0001c0001t0001g0163	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.-163+3555C>T c.-163+3555C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123965411
chrX:123965453	T T	G G	4	a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 others(1): Show a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276	4	HG00558.hp2 NA18966.hp1 NA18975.hp1 others(1): Show HG00558.hp2 NA18966.hp1 NA18975.hp1 NA18979.hp2	intron_variant	MODIFIER	c.-163+3597T>G c.-163+3597T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123965453
chrX:123965478	TG TG	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+3627delG c.-163+3627delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123965478
chrX:123965751	TG TG	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+3898delG c.-163+3898delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123965751
chrX:123965772	TG TG	T T	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+3922delG c.-163+3922delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123965772
chrX:123965874	C C	G G	1	a0001c0001t0001g0162 a0001c0001t0001g0162	1	HG02818.hp1 HG02818.hp1	intron_variant	MODIFIER	c.-163+4018C>G c.-163+4018C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123965874
chrX:123965997	C C	CA CA	1	a0001c0001t0002g0193 a0001c0001t0002g0193	1	NA18950.hp1 NA18950.hp1	intron_variant	MODIFIER	c.-163+4150dupA c.-163+4150dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123965997
chrX:123966132	G G	C C	1	a0001c0001t0001g0075 a0001c0001t0001g0075	1	NA19066.hp1 NA19066.hp1	intron_variant	MODIFIER	c.-163+4276G>C c.-163+4276G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966132
chrX:123966160	T T	C C	2	a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0063 a0001c0002t0001g0064	2	HG03225.hp1 NA18906.hp1 HG03225.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-163+4304T>C c.-163+4304T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966160
chrX:123966228	TGAGGCAG others(3): Show TGAGGCAGGCG	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+4375_-163+438 others(14): Show c.-163+4375_-163+4384delGGCAGGCGGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123966228
chrX:123966332	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+4476C>T c.-163+4476C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966332
chrX:123966334	C C	T T	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	5	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(2): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+4478C>T c.-163+4478C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966334
chrX:123966351	G G	A A	167	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 others(164): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0002c0004t0001g0255 a0003c0006t0001g0226	167	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(164): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00735.hp2 HG01081.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01952.hp1 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18522.hp1 NA18906.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+4495G>A c.-163+4495G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966351
chrX:123966458	TA TA	T T	9	a0001c0001t0001g0012 a0001c0001t0001g0169 a0001c0001t0001g0260 others(6): Show a0001c0001t0001g0012 a0001c0001t0001g0169 a0001c0001t0001g0260 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051	9	HG01515.hp1 HG02630.hp1 HG02896.hp2 others(6): Show HG01515.hp1 HG02630.hp1 HG02896.hp2 NA18975.hp2 NA18979.hp1 NA19000.hp1 NA19003.hp1 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-163+4615delA c.-163+4615delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123966458
chrX:123966533	T T	TC TC	1	a0001c0001t0002g0271 a0001c0001t0002g0271	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-163+4680dupC c.-163+4680dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123966533
chrX:123966762	C C	A A	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.-163+4906C>A c.-163+4906C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966762
chrX:123966975	C C	G G	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-163+5119C>G c.-163+5119C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123966975
chrX:123967256	A A	AT AT	39	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0014 others(36): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0056 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0176 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0270 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0259 a0001c0003t0001g0008 a0002c0004t0001g0255	39	HG00673.hp1 HG00735.hp1 HG01257.hp1 others(36): Show HG00673.hp1 HG00735.hp1 HG01257.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp1 HG02015.hp1 HG02027.hp1 HG02109.hp2 HG02257.hp1 HG02451.hp1 HG02622.hp1 HG02723.hp1 HG02735.hp1 HG02896.hp1 HG03471.hp1 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG03831.hp1 HG04204.hp1 NA18945.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18967.hp1 NA18969.hp2 NA18971.hp1 NA18979.hp2 NA18981.hp2 NA19009.hp1 NA19062.hp1 NA19064.hp1 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA20129.hp2	intron_variant	MODIFIER	c.-163+5426dupT c.-163+5426dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	A A	ATT ATT	40	a0001c0001t0001g0043 a0001c0001t0001g0189 a0001c0001t0002g0011 others(37): Show a0001c0001t0001g0043 a0001c0001t0001g0189 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0045 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0003t0001g0078	40	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(37): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01257.hp2 HG01346.hp1 HG01517.hp2 HG01993.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02258.hp1 HG02886.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18983.hp1 NA18990.hp1 NA19011.hp2 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+5425_-163+542 others(6): Show c.-163+5425_-163+5426dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	A A	ATTT ATTT	7	a0001c0001t0001g0012 a0001c0001t0001g0052 a0001c0001t0002g0044 others(4): Show a0001c0001t0001g0012 a0001c0001t0001g0052 a0001c0001t0002g0044 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0062 a0001c0001t0006g0058	7	HG01175.hp2 HG02056.hp1 HG02273.hp2 others(4): Show HG01175.hp2 HG02056.hp1 HG02273.hp2 HG02630.hp1 HG03688.hp1 NA18979.hp1 NA19000.hp1	intron_variant	MODIFIER	c.-163+5424_-163+542 others(7): Show c.-163+5424_-163+5426dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	A A	ATTTT ATTTT	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-163+5423_-163+542 others(8): Show c.-163+5423_-163+5426dupTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	AT AT	A A	15	a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0166 others(12): Show a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0181 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0261 a0001c0001t0004g0175 a0001c0001t0004g0269	15	HG00642.hp1 HG01884.hp1 HG01952.hp1 others(12): Show HG00642.hp1 HG01884.hp1 HG01952.hp1 HG02074.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02896.hp2 HG02897.hp1 NA18522.hp1 NA18612.hp1 NA19065.hp1 NA19081.hp1	intron_variant	MODIFIER	c.-163+5426delT c.-163+5426delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	ATT ATT	A A	4	a0001c0001t0004g0174 a0001c0002t0001g0063 a0001c0002t0001g0064 others(1): Show a0001c0001t0004g0174 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	4	HG01496.hp1 HG02976.hp2 HG03225.hp1 others(1): Show HG01496.hp1 HG02976.hp2 HG03225.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-163+5425_-163+542 others(6): Show c.-163+5425_-163+5426delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	ATTT ATTT	A A	9	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(6): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0004g0003	9	HG01243.hp1 HG01884.hp2 HG01891.hp2 others(6): Show HG01243.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+5424_-163+542 others(7): Show c.-163+5424_-163+5426delTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967256	ATTTTTT ATTTTTT	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+5421_-163+542 others(10): Show c.-163+5421_-163+5426delTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967256
chrX:123967346	A A	C C	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+5490A>C c.-163+5490A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123967346
chrX:123967397	CTGGGATT others(6960): Show CTGGGATTACAGGCATGTGCCACCACACCGGGCTAATTTTGTACTTTTAG TAGAGACGGGGTTTTTTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGAC CTCAGGTGATCTGCCTGCCTCGGCCTTCCAAAGTTCTGGGATTACAGGCG TGAGCCACTGCGCCCAGCTGGCCTATTCTTTTTTATTACAGTCATGCATT GCTTAACGGCGGGCATACCTTCTGAGAAATGCATCTTTAGGTGATTTTGT TGTGTGAGCATCATACAGTGTACCTACACACACCTAGATGGAATAGCCTA CTATACATCTATGCCATATGGTATGACCTGTTGCTCCTAGGCTACAATCC TGTACAGCATGTTGCTGTACTGAATATCGTAGGCAGTTATAATACAGTGG TAAGTATTTGTGTTTGAAAACAAAAAAGATACAATAAAAATACGGTATAA AAGAAAAAATAGTACACCTCTATAGGGCAGCTCCCTTATAATCTTATGGG ACCACTGTCTTTTTTTTTTTTTTAGATGGAGTCTCCCTCTGTCGCTCAGG CTGGGGTGCAGTGGCGAGATCTTGGCTCACTGCAACCTCTGCCTCCTGAG TTCAAGCGATTCTCCTGCCTTAGCCTCTCAAGTAGCTGGGATTACAGATG CATGCCACCATACCCGGCTAATCTTTGTATTTTTGGTAGAGACGGGCTTT CACCATATTGGTCAGGCTGGTCTCAAACGCCTGACCTCGTGATCCGCCTG CCTCAGCCTCCCCAAGTGCTGGGATTACAGGCATGAGCCACTACACCCAG CTGGGACCACCGTCTTATATGCAGTCTGTTGTGGACTAAAATGTCATTAT ATGGCACATGACTGTATTTTAATTGGGAAATACATTACTAGGCTTGATGA GACAAACTAGGGAGATTTCAGTAAGCTCTGCCTAACTTAAGGGACCATTC AAAGGTAAAATTTCTTTGTAAGAAATAAGTTGGCTGGGCGTGGTGACTCA CCCTCTGAATCCCAGCACTTTGGTAGGCCAAGGTGGGAAGATCTGTTGAG CCCAGGAGTTTGAGACCATCCTGGGCAACGTAGGGAGACCCCATCTCTAC AAAAAAATTTAACAATTAGCTGGGTATGGTTGTGCAGCCTGTGGCCCCAG TTACTGGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCCAGCAGGTTGAG CCTGCAGTGAGCCATGATCATGCCTTTGCACTTCAGCCTGGGCAAAAGAG TAAGACCCTATCTCAAAAAGTTGTTTAAATTCTGTTGTACATCGTTCAAG GGGGGTGAAAAACAAGTCCTATTTACATTTTTGCAAGAATAACTTTTGAA ACCTGAAGCATTCTAAGAAACTTAATTTAACTGCTATTTAAGTTCCTACT GAATGCCAGTAATGCTTTAATCTTCTGTTTAATCTTCTCAACCACTTTGC AGGATAGGTTGTCCTCATCATTTTACACGTGGGGAAATTGACGCTCTCAG AGAGTAAATGCCTTGTCTCAAGTCACATGGATTCACACTCAGATTAGCCT GGCCTCAAAACCTTTGTGCTTTTTTGTTAAACTCAGTTGTTTCCCTTATC TGGTTTAGGTCTTGGGCTATCTGTCATCAGAGAGCATGCATTCTTATTTT AATTTTACAAAATCAAGATTCTTTTTCATGTATAGTGCAAGGTAAATATA GATTTTTACCCAGAGTCAGATAAGTTGCTGCCTGAGGTCTATATTGTCTT TTAATAGTAATAGAAGTAGTTGAAATAAATCTGAGCATTGGTTTTGTTTG CATATGCTTATTAAAGTTTGTGGGATAATGAATTGTATTCTTGAATTTTT TGGGGGGGGAATCATGTGATACATGAAATGGTTTCATAGATATTTTTTCT TTTAGGTCATTTATGCTCTATTTAAAATGGAGATTACATGTGTCTGAGAA TTGTTCCCCAGTCCTTCAGCTTGTTTTACTGAGTGGTTAGATTCGAAGTA AAAAGTTTAGGCTAATCTTTAATAATTCAGCGCTCTGGTTCTTTAGGGGT ATTTTTTGTTATTTAATTGTACCTTAAAAATTCTTTTTTATTCTGTTAAT ATCTCCTGTTTGCTTATACTTCCTATTTTAGTTCATCTTTCACTATTAAG TTTTCTTGTTCTTACTGTTATCAGGTGATAAATAGTTAATATCAGGGCCC CAAGTTATTAGGTTCATTAGTGATCGGTATCTTAGTCTCAGTTTTCTTTT TCCTTTCTGTTTTTTTTTTAGATGGAGTTTCGCGCTTGTTGCCCAGGCTG TGGTGCAGTGGCATGATTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAA GCGATTTCCTCGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCGTAC CACCACACCCGGCTAATTTTTTGTATTTTTGGTAGAGACGGGATTTCCCC ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATTCACCCATC TCCACCCCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGTC TTCCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTGTAACTGAAGTTT TTTTTATCTGAAGGAATTCTGGTTGTTGGACTTATGACCTAAGATAAATT TATGGAGACAAGGAAAACAAAATATATATATTTGTGCTTTTCATAGCCAT GAGTCAAATTTATATGTTTATATTGATCATTCCTTTAAGCTTTAACATGT AGGAAATACTTTTTTCCCAGGTGATGAACAGCAGTCTTATACTCAGACTC TTTGTTCATTGAGGAGTCTTTTCATCCATATTTCCCCCTTTGTATTCCAA GAAAACCAAGAACTGGTGTTCCATGACAGAATTATTCCCCGAGGCATCCA TTGTATATTATAAATTAGTTTCTCCCCTGCACATCTAGAAAGATATTAGT TAGGTATCATTCTTGGGAGACTTCAGGAATAGTCACTGAAGTCATTTTCT GAGTTCTGTAGTCAAGTCATTTTCTGAGTTCTGTAGTTAACATGAGGAAC ACTGGTTGAGAAAGGCTGCTAGAATATTAAGGGACTTGGTTTGGCACTAA ATAAAGTTTTACTTTTCACTGTCACTTTCCTGTTAGTAACTCTAATATGG CCTCTATTAAAATTCGTGATACAATGTGAATGCTGTTGATACTGCTATTG CTGTGGGATAAATTGGTTAGTGTTGATTTCAAGCAGTTAGTGCTGCTTAG TTGTTTGAAAGAATTTAATGTGGGACATTAAATGCATCATTTTATTTATA AGAAGGAATATTGTGGGAGCACTGTTCATTATACAGTTCAAAATCTATAA AAAGTCACTGACAGTGACTAACATGAACAAGAACTAATACTAACTGAACT CTTACCATATGCCAGATACTCTTAAAAATGCTTTGTGTGTATTAGCTTAC TTTATCTTAGTAACTCTATGAGGTAGGATGACCATATGATTTATTGTTCA AGCCAGGATACTTTTGAACGTGAAAGGGATTGCTTCTTGGCCTTTTGGCT AAGATCAAGGGAAGAGTGAGTGAAAGGGGGCACTCACTGAATGGCATGCT GAGATAATAGCAGAAACTAGGACTGTTTGAGAGAAAGGATGTGTGATGAC CCTAATTAATACCTTCTTTTTCAGAAGAAACTGAAGCATAGGGAGACCAA ATAACTTGCCCACTTAGTAAGCGGTAAGAAGGGATTTAAAACCTCTGTAG AGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCG AGGCAGGTGGACCACCTGAGGTCAGGAGTTCGAGCCAGCCTGGCCAATAT GGTGAAACCCCGTCTCTACTAAAAATATAAAAATTAGCCAGGTGTGGTGG CATGTGCCTGTAATCCCAGCTTCTTGGGAGGCTGAGGTAGGAGAATTGCC TGAAGCTGGGGGTAGAGGTTACAGTGAGCTGAGATTGCGTCACTGCACTC CAGCCTGGGCAACAGAGCAAGACTCTTGTCTCTAAAATAAAATAAAACCT GTAGAGATTTCTATGGGAATGAAAGTGATTTAAATTATTTTAAATTGCCA TATTCTGGGAGTTTGTTTACTTTTACCCTTTTGGGGGAGTTTTTGTTGGT ACATGGTCAATAGTAAAAAGACAAGATAGTGTTTTTTAAAATCCAGGAGA ATTTCCACTTGGATTTTTTTCAAGTGGCTGTTAGACTGAGGTGATTATAT TGTCTTAATGTTGAAAAGCAACTTTCCTGAGGGCCACCTAAGTTAAAACA AAACTCTAAGATAACGACATCTGAGTTTGTTTTCCGTATGTATTATTCAG GTTCCCTTTACCATTTTCTTAGGCAGAAATGTGGATTGTAGAAATTTTTA CTGAGAAGACAGTAGAAAGAAGATGAATACTTTTGTGACTAGGGAGAAGT GTTACTAGAAAAGAAAGAAAAAGGTCCAGTTTAGAGACTTTTGAAGGTAA ACTGATTCTGTAGCATAGTTTGAGAGTTAAGTCTTGTAGAGATTAATATG TCATTTCATAAAAAATATCCCTCTTTTATTGTGATTTTTAAAGCTATTTT ATATTTCTGGCCTGTTTATGCTTGTGCTGTCACCTGAAAAAATATTACTG GTGAATTCAAATGTGGAGAAATGATTTTGGCACAGTTGTGGAAACAACTA TATTGTAAACTAAGATCTTTTTTTTTCCTTTGAGTGGGAGTGAATGGTAG TATCTGATCTTAAGGAGACTTCCAGTTTTGTTTTCATACTTGGCTATTTT AATAGTTCATTGAGTAATTTGTGTTTTTTTTTTTCCCTCTAGCTAGTTGA CGTTTGGAGGTTTTGTTGGTGTAACTATCATTTTTTTTTTTTCTTTTTTT TTGAGGTGGAGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCAC TGCAAGCTCCACCTCCGGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCG AGTAGCTGGGACTACAGGCGCCTGCCACCATGGCCGGCTAATTTTTTTGT ATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATC TCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCCGGGATTAC AGGCGTGAGCCACCGCGCCCGGCCAATTTTTAAGGTCTTTTATTTAGTTC ATTGAAACCATTATGAGACAAGATATAGCTTGAAGGGGGACTGCATTTCT CACCAGATGAAGGAATTTGTGGCCTGTGTAGTGACTACGGGAGACAAAAG GTTATTTTGAGGAGATTTGATTTATTATATAAGATTAATGGGCTGGGCTA GGTGGCTCATGCCTGTATTCCCAGCACTTTGGGAGGCTGAGGCTGGTGGA TCACTTGAGCTCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAACTC CCCCCCTCTACCAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAGAACC GAATCAGCCTGGCGTGGTGGCGCTCACCTGTGGTCTCAGCTACTCAGGAG GCAGAGGTGGGAGGATCACTTGAGCCTGGGAGGCGGAGGTTGCAGTGAGC TGAGATTGTGACATTGTACTCCAGCCTGGGTGATAGAGTGAGACCCCCAC TCAAAAGAGAAAAAAAACAGTAGTAAAATAAAATAAAAAAAAAATGCAGT TGGATTTTAAATACTATATTGCTGGTTTTTAAGCTGGGGTCCATGAATGG GATGGAGATTTGTGAACCCTCTCAAATTATGTACAAACTGTATACATGCA TTTCATCAGTTTCTCTAGGGCTCATTGTTAAAATCAGCTGGTATTTAAAG TACTTATGGGGGACCGGGTGCGGTAGCTCATCATGCCTGTAATCCCAGCA CTTTGGGAGGCTGAGGCAGGCAGATCATGAGGTCAGGAGATCGAGACCAT CCTGGCCAACACGGTGAGACCCCGTCTCTACTAAAATAACAAAAAATTAG CCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGTGGCTGAGG CAGGGGAATTGCTTGAACCCGGGAGGCTGAGATTGCAGTGAGCCGAGATC GTGCCACAGCACTCCAGCCTGGCAACAGAGTGAGACTCTGTCTCAAAAAA AAAAAAAAAAAAAATAGACTGGGCGCGGTGGCTCACACCTGTAATCCCAG CACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAATTCAAGA CTAGCCTGAGCAATGTGGAGAAACCCCATCTCTACTAAAAATGCAAAATT AGCTGGGTGTGGTGGTGCATGCCTGTAGTCCCAGCTATTCGGGAGGCTGA GGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGA TCACGCCATTGCACTCCAGCCTGGACAACAAGAGTGAAACTCCCTCTCAA AAAAAAAAAAAAGTACCTATGAAAGATGGGATATACAATGGTAAACTAGA TTACATAGTCTCTGCCCTTAGGGGAATATAGTCAGTTGGACTTTGTCACT ACAGAAGGGTTAAAAAAATACCTATTAAAATACCGTGTATTGGGTTTACA TTAAAGAATATTGGGCTAAAACCAGCCATCAATGCAGTTTTGGCACTGTG TTCCTAATGTGAGATTAGTGACATACTGAAAAATTAGGGCTGCACTGAAA AACTTCAGGGAAAAATAACAACTGAGAAAACAAGCAGAACAACCGAGGGC TTTAATGTAGCCTTGGAATGCTTCAGTCTTTGGCAGTTGTTAATAAACAA AGTTAAAAGAGCCCATGATCATCTTTTCTTTTCTTTTTTCTTTTTTTTTT TTTTGAGACGGAGCCTTACTCTGTTGGCCAGGCTGGAGTGTAGTGGCACA ATCTTGGCTTACTGAAACCTCCACCTCCTGAGTTCAAGTGATTCTCCTGC CTTAGCCTCCCAAGTAGT	C C	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-163+5556_-163+125 others(5): Show c.-163+5556_-163+12522del	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967397
chrX:123967493	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+5637C>T c.-163+5637C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123967493
chrX:123967525	CA CA	C C	1	a0001c0001t0002g0047 a0001c0001t0002g0047	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.-163+5672delA c.-163+5672delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967525
chrX:123967839	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+5983C>T c.-163+5983C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123967839
chrX:123967905	CT CT	C C	1	a0001c0001t0001g0196 a0001c0001t0001g0196	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.-163+6063delT c.-163+6063delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967905
chrX:123967905	CTT CTT	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+6062_-163+606 others(6): Show c.-163+6062_-163+6063delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123967905
chrX:123967947	C C	G G	1	a0001c0001t0001g0150 a0001c0001t0001g0150	1	HG01993.hp2 HG01993.hp2	intron_variant	MODIFIER	c.-163+6091C>G c.-163+6091C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123967947
chrX:123968142	G G	A A	1	a0001c0001t0001g0179 a0001c0001t0001g0179	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-163+6286G>A c.-163+6286G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123968142
chrX:123968476	G G	A A	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+6620G>A c.-163+6620G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123968476
chrX:123968765	AACTT AACTT	A A	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+6911_-163+691 others(8): Show c.-163+6911_-163+6914delCTTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123968765
chrX:123969203	CT CT	C C	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+7349delT c.-163+7349delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969203
chrX:123969218	G G	A A	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.-163+7362G>A c.-163+7362G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123969218
chrX:123969247	T T	TG TG	1	a0001c0001t0001g0249 a0001c0001t0001g0249	1	NA18941.hp1 NA18941.hp1	intron_variant	MODIFIER	c.-163+7399dupG c.-163+7399dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969247
chrX:123969247	TG TG	T T	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+7399delG c.-163+7399delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969247
chrX:123969255	G G	A A	1	a0004c0005t0007g0083 a0004c0005t0007g0083	1	NA18941.hp2 NA18941.hp2	intron_variant	MODIFIER	c.-163+7399G>A c.-163+7399G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123969255
chrX:123969469	CT CT	C C	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+7615delT c.-163+7615delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969469
chrX:123969567	T T	C C	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-163+7711T>C c.-163+7711T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123969567
chrX:123969632	T T	TC TC	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+7777dupC c.-163+7777dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969632
chrX:123969655	G G	GT GT	2	a0001c0001t0001g0248 a0001c0001t0001g0264 a0001c0001t0001g0248 a0001c0001t0001g0264	2	HG00438.hp2 NA18961.hp1 HG00438.hp2 NA18961.hp1	intron_variant	MODIFIER	c.-163+7809dupT c.-163+7809dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969655
chrX:123969693	G G	A A	4	a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 others(1): Show a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276	4	HG00558.hp2 NA18966.hp1 NA18975.hp1 others(1): Show HG00558.hp2 NA18966.hp1 NA18975.hp1 NA18979.hp2	intron_variant	MODIFIER	c.-163+7837G>A c.-163+7837G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123969693
chrX:123969938	C C	CA CA	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+8083dupA c.-163+8083dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969938
chrX:123969939	AC AC	A A	1	a0001c0001t0001g0149 a0001c0001t0001g0149	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.-163+8086delC c.-163+8086delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969939
chrX:123969952	G G	GT GT	30	a0001c0001t0001g0005 a0001c0001t0001g0013 a0001c0001t0001g0055 others(27): Show a0001c0001t0001g0005 a0001c0001t0001g0013 a0001c0001t0001g0055 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0072 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0161 a0001c0001t0001g0178 a0001c0001t0001g0189 a0001c0001t0001g0197 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	30	HG01433.hp1 HG01496.hp1 HG01496.hp2 others(27): Show HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01884.hp2 HG02055.hp1 HG02071.hp1 HG02258.hp1 HG02280.hp1 HG02451.hp2 HG02630.hp2 HG02818.hp2 HG02976.hp1 HG02976.hp2 HG03139.hp1 HG03225.hp1 HG04199.hp1 NA18906.hp1 NA18955.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA19043.hp1 NA19058.hp1 NA19060.hp1 NA19077.hp1 NA19081.hp2 NA19090.hp2 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-163+8123dupT c.-163+8123dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	G G	GTT GTT	52	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(49): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0052 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0073 a0001c0001t0001g0162 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0258 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	52	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(49): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01243.hp1 HG01257.hp2 HG01346.hp1 HG01517.hp2 HG01891.hp2 HG01928.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02723.hp1 HG02818.hp1 HG02896.hp1 HG03098.hp1 HG03209.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG04115.hp1 NA18944.hp1 NA18949.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19011.hp2 NA19064.hp2 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+8122_-163+812 others(6): Show c.-163+8122_-163+8123dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	G G	GTTT GTTT	3	a0001c0001t0001g0077 a0001c0001t0002g0042 a0001c0001t0002g0051 a0001c0001t0001g0077 a0001c0001t0002g0042 a0001c0001t0002g0051	3	HG02717.hp1 HG03942.hp1 NA19000.hp1 HG02717.hp1 HG03942.hp1 NA19000.hp1	intron_variant	MODIFIER	c.-163+8121_-163+812 others(7): Show c.-163+8121_-163+8123dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	G G	GTTTT GTTTT	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	NA19090.hp1 NA19090.hp1	intron_variant	MODIFIER	c.-163+8120_-163+812 others(8): Show c.-163+8120_-163+8123dupTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	GT GT	G G	24	a0001c0001t0001g0053 a0001c0001t0001g0086 a0001c0001t0001g0087 others(21): Show a0001c0001t0001g0053 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0272 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0008g0001 a0004c0005t0007g0083	24	HG00280.hp1 HG00597.hp2 HG01123.hp2 others(21): Show HG00280.hp1 HG00597.hp2 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01517.hp1 HG01884.hp1 HG01943.hp1 HG01993.hp2 HG02165.hp1 HG02559.hp1 HG02559.hp2 HG02735.hp1 HG02809.hp2 HG02897.hp2 HG02965.hp1 NA18612.hp1 NA18906.hp2 NA18941.hp2 NA18959.hp1 NA18965.hp1 NA18984.hp1 NA19087.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+8123delT c.-163+8123delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	GTT GTT	G G	4	a0001c0001t0001g0012 a0001c0001t0001g0190 a0001c0001t0001g0191 others(1): Show a0001c0001t0001g0012 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0003t0001g0008	4	HG02257.hp2 HG02630.hp1 HG02895.hp1 others(1): Show HG02257.hp2 HG02630.hp1 HG02895.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+8122_-163+812 others(6): Show c.-163+8122_-163+8123delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	GTTTTTTT others(4): Show GTTTTTTTTTTT	G G	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA18999.hp2 NA18999.hp2	intron_variant	MODIFIER	c.-163+8113_-163+812 others(15): Show c.-163+8113_-163+8123delTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969952	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	G G	2	a0001c0001t0001g0084 a0001c0001t0002g0151 a0001c0001t0001g0084 a0001c0001t0002g0151	2	HG01891.hp1 HG02886.hp2 HG01891.hp1 HG02886.hp2	intron_variant	MODIFIER	c.-163+8110_-163+812 others(18): Show c.-163+8110_-163+8123delTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969952
chrX:123969979	TA TA	T T	6	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(3): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172	6	HG02280.hp2 HG02647.hp1 HG02809.hp1 others(3): Show HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-163+8125delA c.-163+8125delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123969979
chrX:123969980	A A	T T	1	a0001c0001t0001g0173 a0001c0001t0001g0173	1	HG01952.hp1 HG01952.hp1	intron_variant	MODIFIER	c.-163+8124A>T c.-163+8124A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123969980
chrX:123970022	T T	C C	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	HG02148.hp2 HG02148.hp2	intron_variant	MODIFIER	c.-163+8166T>C c.-163+8166T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123970022
chrX:123970287	G G	A A	1	a0001c0001t0006g0058 a0001c0001t0006g0058	1	HG02273.hp2 HG02273.hp2	intron_variant	MODIFIER	c.-163+8431G>A c.-163+8431G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123970287
chrX:123970373	G G	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-163+8517G>A c.-163+8517G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123970373
chrX:123970639	C C	A A	1	a0001c0001t0001g0072 a0001c0001t0001g0072	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-163+8783C>A c.-163+8783C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123970639
chrX:123970819	TA TA	T T	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+8968delA c.-163+8968delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123970819
chrX:123971119	G G	A A	1	a0001c0001t0002g0070 a0001c0001t0002g0070	1	HG00558.hp1 HG00558.hp1	intron_variant	MODIFIER	c.-163+9263G>A c.-163+9263G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123971119
chrX:123971403	G G	A A	2	a0001c0001t0001g0076 a0001c0003t0001g0078 a0001c0001t0001g0076 a0001c0003t0001g0078	2	HG02886.hp1 HG03579.hp1 HG02886.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-163+9547G>A c.-163+9547G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123971403
chrX:123971460	TG TG	T T	1	a0001c0001t0001g0170 a0001c0001t0001g0170	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.-163+9607delG c.-163+9607delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123971460
chrX:123971873	C C	G G	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.-163+10017C>G c.-163+10017C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123971873
chrX:123971941	A A	G G	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+10085A>G c.-163+10085A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123971941
chrX:123972049	G G	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+10193G>A c.-163+10193G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972049
chrX:123972219	G G	GT GT	3	a0001c0001t0001g0247 a0001c0001t0001g0257 a0001c0001t0001g0261 a0001c0001t0001g0247 a0001c0001t0001g0257 a0001c0001t0001g0261	3	HG02074.hp1 HG04199.hp1 HG04204.hp1 HG02074.hp1 HG04199.hp1 HG04204.hp1	intron_variant	MODIFIER	c.-163+10374dupT c.-163+10374dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972219
chrX:123972276	AT AT	A A	8	a0001c0001t0001g0080 a0001c0001t0001g0092 a0001c0001t0001g0093 others(5): Show a0001c0001t0001g0080 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0190 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	8	HG00280.hp1 HG00642.hp1 HG01123.hp2 others(5): Show HG00280.hp1 HG00642.hp1 HG01123.hp2 HG01175.hp2 HG01192.hp1 HG02257.hp2 HG02273.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+10432delT c.-163+10432delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972276
chrX:123972289	C C	CT CT	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-163+10442dupT c.-163+10442dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972289
chrX:123972291	T T	G G	1	a0001c0001t0008g0001 a0001c0001t0008g0001	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-163+10435T>G c.-163+10435T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972291
chrX:123972370	A A	G G	1	a0001c0001t0001g0194 a0001c0001t0001g0194	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-163+10514A>G c.-163+10514A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972370
chrX:123972414	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+10558G>A c.-163+10558G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972414
chrX:123972419	T T	C C	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-163+10563T>C c.-163+10563T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972419
chrX:123972482	AG AG	A A	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+10628delG c.-163+10628delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972482
chrX:123972490	C C	G G	1	a0001c0001t0001g0152 a0001c0001t0001g0152	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.-163+10634C>G c.-163+10634C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972490
chrX:123972513	C C	T T	2	a0001c0001t0001g0056 a0001c0001t0001g0145 a0001c0001t0001g0056 a0001c0001t0001g0145	2	NA18947.hp2 NA18967.hp1 NA18947.hp2 NA18967.hp1	intron_variant	MODIFIER	c.-163+10657C>T c.-163+10657C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972513
chrX:123972566	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+10710C>T c.-163+10710C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972566
chrX:123972568	G G	A A	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-163+10712G>A c.-163+10712G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972568
chrX:123972632	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.-163+10776G>A c.-163+10776G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972632
chrX:123972647	C C	G G	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+10791C>G c.-163+10791C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972647
chrX:123972789	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+10933C>T c.-163+10933C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972789
chrX:123972845	T T	TC TC	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+10996dupC c.-163+10996dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972845
chrX:123972866	C C	CA CA	37	a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 others(34): Show a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0146 a0001c0001t0001g0149 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0180 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0190 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0273 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0007t0001g0165 a0004c0005t0007g0083	37	HG00280.hp1 HG00642.hp1 HG01081.hp1 others(34): Show HG00280.hp1 HG00642.hp1 HG01081.hp1 HG01081.hp2 HG01123.hp2 HG01358.hp1 HG01361.hp2 HG01496.hp2 HG01928.hp1 HG02027.hp1 HG02148.hp1 HG02257.hp2 HG02615.hp1 HG02723.hp1 HG02886.hp2 HG02896.hp1 HG03239.hp1 HG03486.hp1 HG04184.hp2 HG04228.hp1 NA18941.hp2 NA18949.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp1 NA18975.hp1 NA18979.hp2 NA18991.hp1 NA18999.hp2 NA19007.hp1 NA19065.hp2 NA19066.hp1 NA19089.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+11035dupA c.-163+11035dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAA CAA	55	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0094 others(52): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0094 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0062 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	55	HG00621.hp1 HG00639.hp2 HG01123.hp1 others(52): Show HG00621.hp1 HG00639.hp2 HG01123.hp1 HG01175.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18962.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+11034_-163+11 others(8): Show c.-163+11034_-163+11035dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAAA CAAA	23	a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0205 others(20): Show a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0260 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216	23	HG00438.hp2 HG01175.hp1 HG02071.hp1 others(20): Show HG00438.hp2 HG01175.hp1 HG02071.hp1 HG02486.hp1 HG02559.hp1 HG02615.hp2 HG02723.hp2 HG02922.hp1 HG02922.hp2 HG03195.hp1 HG03831.hp1 NA18943.hp1 NA18950.hp1 NA18961.hp1 NA18981.hp2 NA18986.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19064.hp1 NA19090.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-163+11033_-163+11 others(9): Show c.-163+11033_-163+11035dupAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAAAA CAAAA	5	a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0002g0041 others(2): Show a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0002g0041 a0001c0001t0002g0046 a0001c0001t0003g0244	5	HG01257.hp2 HG02055.hp1 HG02145.hp1 others(2): Show HG01257.hp2 HG02055.hp1 HG02145.hp1 HG02572.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+11032_-163+11 others(10): Show c.-163+11032_-163+11035dupAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAAAAA CAAAAA	24	a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0002g0011 others(21): Show a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0002g0011 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0034 a0001c0001t0006g0010 a0001c0001t0006g0058	24	HG00438.hp1 HG00609.hp1 HG01346.hp1 others(21): Show HG00438.hp1 HG00609.hp1 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02080.hp2 HG02132.hp1 HG02273.hp2 HG02559.hp2 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp1 NA18944.hp1 NA18952.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19064.hp2 NA19082.hp1 NA19087.hp2	intron_variant	MODIFIER	c.-163+11031_-163+11 others(11): Show c.-163+11031_-163+11035dupAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAAAAAA CAAAAAA	21	a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0016 others(18): Show a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0051 a0001c0001t0002g0070 a0001c0001t0005g0027 a0001c0001t0006g0009	21	HG00140.hp1 HG00558.hp1 HG00735.hp2 others(18): Show HG00140.hp1 HG00558.hp1 HG00735.hp2 HG02056.hp1 HG02148.hp2 HG02451.hp1 HG02630.hp1 HG03490.hp1 HG03540.hp1 HG03704.hp2 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18960.hp1 NA18969.hp1 NA19000.hp1 NA19011.hp2 NA19083.hp1 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+11030_-163+11 others(12): Show c.-163+11030_-163+11035dupAAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAAAAAAA CAAAAAAA	2	a0001c0001t0001g0014 a0001c0001t0001g0071 a0001c0001t0001g0014 a0001c0001t0001g0071	2	HG02622.hp1 HG03209.hp1 HG02622.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-163+11029_-163+11 others(13): Show c.-163+11029_-163+11035dupAAAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	C C	CAAAAAAA others(1): Show CAAAAAAAA	1	a0001c0001t0005g0019 a0001c0001t0005g0019	1	HG00597.hp1 HG00597.hp1	intron_variant	MODIFIER	c.-163+11028_-163+11 others(14): Show c.-163+11028_-163+11035dupAAAAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	CA CA	C C	8	a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0072 others(5): Show a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0072 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0243 a0001c0002t0001g0064 a0001c0002t0001g0069	8	HG01496.hp1 HG01884.hp2 HG03139.hp1 others(5): Show HG01496.hp1 HG01884.hp2 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18984.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+11035delA c.-163+11035delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972866	CAA CAA	C C	1	a0001c0001t0004g0003 a0001c0001t0004g0003	1	HG02976.hp1 HG02976.hp1	intron_variant	MODIFIER	c.-163+11034_-163+11 others(8): Show c.-163+11034_-163+11035delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972866
chrX:123972903	G G	GC GC	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+11049dupC c.-163+11049dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123972903
chrX:123972941	C C	T T	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+11085C>T c.-163+11085C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123972941
chrX:123973055	G G	GA GA	1	a0001c0001t0001g0247 a0001c0001t0001g0247	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.-163+11207dupA c.-163+11207dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973055
chrX:123973100	A A	AT AT	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+11248dupT c.-163+11248dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973100
chrX:123973414	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+11558T>C c.-163+11558T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123973414
chrX:123973479	T T	C C	1	a0001c0001t0001g0104 a0001c0001t0001g0104	1	NA19012.hp1 NA19012.hp1	intron_variant	MODIFIER	c.-163+11623T>C c.-163+11623T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123973479
chrX:123973540	C C	CA CA	140	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(137): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0077 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0105 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	140	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(137): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00735.hp2 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp2 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02258.hp1 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18906.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18999.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19043.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+11704dupA c.-163+11704dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973540
chrX:123973540	C C	CAA CAA	19	a0001c0001t0001g0005 a0001c0001t0001g0052 a0001c0001t0001g0171 others(16): Show a0001c0001t0001g0005 a0001c0001t0001g0052 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0190 a0001c0001t0001g0217 a0001c0001t0001g0248 a0001c0001t0001g0260 a0001c0001t0001g0270 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0051 a0001c0001t0002g0062 a0001c0001t0002g0271 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0006g0058	19	HG00621.hp1 HG01175.hp2 HG01952.hp1 others(16): Show HG00621.hp1 HG01175.hp2 HG01952.hp1 HG02257.hp2 HG02273.hp2 HG02280.hp2 HG02738.hp1 HG02818.hp2 HG02976.hp2 HG03688.hp1 HG03831.hp2 NA18522.hp1 NA18961.hp1 NA18969.hp1 NA18991.hp2 NA19000.hp1 NA19003.hp1 NA19011.hp2 NA19077.hp2	intron_variant	MODIFIER	c.-163+11703_-163+11 others(8): Show c.-163+11703_-163+11704dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973540
chrX:123973540	C C	CAAA CAAA	1	a0001c0001t0004g0269 a0001c0001t0004g0269	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.-163+11702_-163+11 others(9): Show c.-163+11702_-163+11704dupAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973540
chrX:123973540	CA CA	C C	2	a0001c0001t0001g0091 a0001c0001t0002g0144 a0001c0001t0001g0091 a0001c0001t0002g0144	2	HG01255.hp1 NA18906.hp2 HG01255.hp1 NA18906.hp2	intron_variant	MODIFIER	c.-163+11704delA c.-163+11704delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973540
chrX:123973561	T T	A A	6	a0001c0001t0001g0180 a0001c0001t0001g0250 a0001c0001t0001g0270 others(3): Show a0001c0001t0001g0180 a0001c0001t0001g0250 a0001c0001t0001g0270 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	6	HG02280.hp1 HG02818.hp2 HG02976.hp2 others(3): Show HG02280.hp1 HG02818.hp2 HG02976.hp2 NA18959.hp1 NA19064.hp1 NA19077.hp2	intron_variant	MODIFIER	c.-163+11705T>A c.-163+11705T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123973561
chrX:123973688	T T	C C	1	a0001c0001t0003g0106 a0001c0001t0003g0106	1	NA19240.hp2 NA19240.hp2	intron_variant	MODIFIER	c.-163+11832T>C c.-163+11832T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123973688
chrX:123973706	T T	TG TG	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+11852dupG c.-163+11852dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973706
chrX:123973712	T T	C C	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+11856T>C c.-163+11856T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123973712
chrX:123973739	G G	A A	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-163+11883G>A c.-163+11883G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123973739
chrX:123973844	C C	CA CA	3	a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0002g0042 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0002g0042	3	HG03831.hp1 HG03942.hp1 NA18981.hp2 HG03831.hp1 HG03942.hp1 NA18981.hp2	intron_variant	MODIFIER	c.-163+12002dupA c.-163+12002dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973844
chrX:123973844	CA CA	C C	3	a0001c0001t0001g0090 a0001c0001t0001g0143 a0001c0001t0001g0189 a0001c0001t0001g0090 a0001c0001t0001g0143 a0001c0001t0001g0189	3	HG02258.hp1 HG02965.hp1 HG03130.hp1 HG02258.hp1 HG02965.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-163+12002delA c.-163+12002delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973844
chrX:123973957	T T	TA TA	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+12108dupA c.-163+12108dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123973957
chrX:123974138	AC AC	A A	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+12284delC c.-163+12284delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974138
chrX:123974166	G G	A A	1	a0001c0001t0001g0195 a0001c0001t0001g0195	1	NA19065.hp1 NA19065.hp1	intron_variant	MODIFIER	c.-163+12310G>A c.-163+12310G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974166
chrX:123974236	C C	CT CT	46	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0181 others(43): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0181 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0004g0174 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	46	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(43): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02280.hp1 HG02738.hp1 HG02976.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 NA18612.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-163+12394dupT c.-163+12394dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974236
chrX:123974236	C C	CTT CTT	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-163+12393_-163+12 others(8): Show c.-163+12393_-163+12394dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974236
chrX:123974236	CT CT	C C	2	a0001c0001t0001g0108 a0001c0001t0001g0263 a0001c0001t0001g0108 a0001c0001t0001g0263	2	NA18982.hp1 NA18989.hp1 NA18982.hp1 NA18989.hp1	intron_variant	MODIFIER	c.-163+12394delT c.-163+12394delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974236
chrX:123974354	TC TC	T T	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+12501delC c.-163+12501delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974354
chrX:123974364	T T	C C	274	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(271): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	274	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(271): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-163+12508T>C c.-163+12508T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974364
chrX:123974402	T T	C C	1	a0001c0001t0002g0023 a0001c0001t0002g0023	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.-163+12546T>C c.-163+12546T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974402
chrX:123974412	GA GA	G G	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+12559delA c.-163+12559delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974412
chrX:123974445	C C	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+12589C>G c.-163+12589C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974445
chrX:123974532	A A	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+12676A>C c.-163+12676A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974532
chrX:123974573	C C	A A	1	a0001c0001t0001g0218 a0001c0001t0001g0218	1	NA18957.hp2 NA18957.hp2	intron_variant	MODIFIER	c.-163+12717C>A c.-163+12717C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974573
chrX:123974577	C C	CT CT	15	a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0074 others(12): Show a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0089 a0001c0001t0001g0103 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0176 a0001c0001t0002g0028 a0001c0001t0002g0259 a0001c0001t0007g0141 a0001c0001t0009g0139	15	HG00597.hp2 HG00735.hp1 HG01069.hp1 others(12): Show HG00597.hp2 HG00735.hp1 HG01069.hp1 HG01074.hp1 HG02257.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp2 HG03579.hp1 HG03688.hp1 HG04115.hp1 HG04228.hp1 NA19009.hp1 NA19064.hp2 NA19068.hp1	intron_variant	MODIFIER	c.-163+12740dupT c.-163+12740dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974577
chrX:123974577	CT CT	C C	5	a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0150 others(2): Show a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0150 a0001c0001t0001g0180 a0001c0001t0001g0243	5	HG01993.hp2 HG03195.hp2 NA18959.hp1 others(2): Show HG01993.hp2 HG03195.hp2 NA18959.hp1 NA18982.hp1 NA19085.hp1	intron_variant	MODIFIER	c.-163+12740delT c.-163+12740delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974577
chrX:123974577	CTT CTT	C C	1	a0001c0001t0001g0094 a0001c0001t0001g0094	1	HG02109.hp1 HG02109.hp1	intron_variant	MODIFIER	c.-163+12739_-163+12 others(8): Show c.-163+12739_-163+12740delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974577
chrX:123974577	CTTTT CTTTT	C C	2	a0001c0001t0001g0241 a0001c0001t0003g0216 a0001c0001t0001g0241 a0001c0001t0003g0216	2	HG02615.hp2 NA19089.hp1 HG02615.hp2 NA19089.hp1	intron_variant	MODIFIER	c.-163+12737_-163+12 others(10): Show c.-163+12737_-163+12740delTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974577
chrX:123974577	CTTTTT CTTTTT	C C	80	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0183 others(77): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	80	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(77): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+12736_-163+12 others(11): Show c.-163+12736_-163+12740delTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974577
chrX:123974577	CTTTTTT CTTTTTT	C C	1	a0001c0001t0001g0260 a0001c0001t0001g0260	1	NA19003.hp1 NA19003.hp1	intron_variant	MODIFIER	c.-163+12735_-163+12 others(12): Show c.-163+12735_-163+12740delTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974577
chrX:123974750	T T	TG TG	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+12895dupG c.-163+12895dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974750
chrX:123974857	A A	G G	3	a0001c0001t0002g0022 a0001c0001t0002g0039 a0001c0001t0002g0045 a0001c0001t0002g0022 a0001c0001t0002g0039 a0001c0001t0002g0045	3	NA18990.hp1 NA19011.hp2 NA19083.hp1 NA18990.hp1 NA19011.hp2 NA19083.hp1	intron_variant	MODIFIER	c.-163+13001A>G c.-163+13001A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974857
chrX:123974886	AT AT	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+13034delT c.-163+13034delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123974886
chrX:123974901	A A	G G	53	a0001c0001t0001g0005 a0001c0001t0001g0183 a0001c0001t0001g0184 others(50): Show a0001c0001t0001g0005 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0002c0004t0001g0255 a0003c0006t0001g0226	53	HG00438.hp2 HG01123.hp1 HG01175.hp1 others(50): Show HG00438.hp2 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02071.hp1 HG02080.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1	intron_variant	MODIFIER	c.-163+13045A>G c.-163+13045A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123974901
chrX:123975042	A A	T T	1	a0001c0001t0001g0272 a0001c0001t0001g0272	1	HG01517.hp1 HG01517.hp1	intron_variant	MODIFIER	c.-163+13186A>T c.-163+13186A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123975042
chrX:123975052	G G	A A	1	a0001c0001t0001g0171 a0001c0001t0001g0171	1	HG02280.hp2 HG02280.hp2	intron_variant	MODIFIER	c.-163+13196G>A c.-163+13196G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123975052
chrX:123975186	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+13330G>A c.-163+13330G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123975186
chrX:123975226	AAAG AAAG	A A	4	a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 others(1): Show a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 a0001c0001t0002g0136	4	HG00639.hp1 HG01361.hp2 HG02683.hp2 others(1): Show HG00639.hp1 HG01361.hp2 HG02683.hp2 HG03669.hp1	intron_variant	MODIFIER	c.-163+13378_-163+13 others(9): Show c.-163+13378_-163+13380delAGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123975226
chrX:123975300	G G	GT GT	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+13447dupT c.-163+13447dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123975300
chrX:123975471	C C	CT CT	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+13623dupT c.-163+13623dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123975471
chrX:123975519	A A	G G	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-163+13663A>G c.-163+13663A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123975519
chrX:123975673	AG AG	A A	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+13819delG c.-163+13819delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123975673
chrX:123975744	A A	G G	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.-163+13888A>G c.-163+13888A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123975744
chrX:123975773	CT CT	C C	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+13922delT c.-163+13922delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123975773
chrX:123975823	A A	G G	1	a0001c0001t0001g0261 a0001c0001t0001g0261	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.-163+13967A>G c.-163+13967A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123975823
chrX:123976034	C C	CA CA	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+14180dupA c.-163+14180dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976034
chrX:123976041	T T	C C	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+14185T>C c.-163+14185T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976041
chrX:123976077	CG CG	C C	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+14223delG c.-163+14223delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976077
chrX:123976198	C C	G G	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+14342C>G c.-163+14342C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976198
chrX:123976231	G G	GC GC	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+14377dupC c.-163+14377dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976231
chrX:123976235	C C	CT CT	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+14380dupT c.-163+14380dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976235
chrX:123976274	T T	TA TA	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.-163+14427dupA c.-163+14427dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976274
chrX:123976293	ATGAAAT ATGAAAT	A A	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG03669.hp2 HG03669.hp2	intron_variant	MODIFIER	c.-163+14439_-163+14 others(12): Show c.-163+14439_-163+14444delGAAATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976293
chrX:123976356	T T	TA TA	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+14503dupA c.-163+14503dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123976356
chrX:123976379	C C	T T	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+14523C>T c.-163+14523C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976379
chrX:123976533	A A	T T	85	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 others(82): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0243 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078	85	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(82): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01346.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01952.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18522.hp1 NA18906.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19043.hp1 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+14677A>T c.-163+14677A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976533
chrX:123976545	A A	C C	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+14689A>C c.-163+14689A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976545
chrX:123976728	A A	C C	1	a0001c0001t0001g0146 a0001c0001t0001g0146	1	NA18991.hp1 NA18991.hp1	intron_variant	MODIFIER	c.-163+14872A>C c.-163+14872A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976728
chrX:123976739	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+14883A>G c.-163+14883A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976739
chrX:123976879	G G	A A	1	a0001c0001t0001g0192 a0001c0001t0001g0192	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.-163+15023G>A c.-163+15023G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123976879
chrX:123977016	T T	G G	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG03669.hp2 HG03669.hp2	intron_variant	MODIFIER	c.-163+15160T>G c.-163+15160T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977016
chrX:123977123	C C	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+15267C>A c.-163+15267C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977123
chrX:123977131	AGAT AGAT	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+15279_-163+15 others(9): Show c.-163+15279_-163+15281delGAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977131
chrX:123977243	A A	AT AT	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+15391dupT c.-163+15391dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977243
chrX:123977391	T T	C C	13	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(10): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	13	HG01243.hp1 HG01496.hp1 HG01884.hp2 others(10): Show HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+15535T>C c.-163+15535T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977391
chrX:123977444	G G	GT GT	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+15596dupT c.-163+15596dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977444
chrX:123977444	GT GT	G G	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0110 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+15596delT c.-163+15596delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977444
chrX:123977451	T T	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+15595T>C c.-163+15595T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977451
chrX:123977452	T T	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+15596T>C c.-163+15596T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977452
chrX:123977452	T T	TC TC	1	a0001c0001t0001g0187 a0001c0001t0001g0187	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+15603dupC c.-163+15603dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977452
chrX:123977463	G G	A A	10	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(7): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	10	HG01496.hp1 HG01884.hp2 HG02630.hp2 others(7): Show HG01496.hp1 HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+15607G>A c.-163+15607G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977463
chrX:123977506	G G	GT GT	1	a0001c0001t0001g0155 a0001c0001t0001g0155	1	NA18949.hp2 NA18949.hp2	intron_variant	MODIFIER	c.-163+15654dupT c.-163+15654dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977506
chrX:123977646	G G	GA GA	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+15798dupA c.-163+15798dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977646
chrX:123977743	G G	A A	13	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(10): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	13	HG01243.hp1 HG01496.hp1 HG01884.hp2 others(10): Show HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+15887G>A c.-163+15887G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977743
chrX:123977765	C C	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-163+15909C>G c.-163+15909C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977765
chrX:123977832	G G	GT GT	37	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0056 others(34): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0056 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0088 a0001c0001t0001g0092 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0146 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0179 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0002g0022 a0001c0001t0002g0028 a0001c0001t0002g0057 a0001c0001t0007g0141	37	HG00558.hp2 HG00642.hp1 HG00673.hp1 others(34): Show HG00558.hp2 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01081.hp2 HG01358.hp1 HG01517.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02080.hp2 HG02148.hp1 HG02273.hp1 HG02602.hp1 HG02735.hp1 HG02886.hp2 HG03704.hp1 HG04115.hp1 NA18966.hp1 NA18967.hp1 NA18975.hp1 NA18977.hp1 NA18981.hp1 NA18984.hp1 NA18991.hp1 NA18995.hp1 NA18999.hp2 NA19011.hp2 NA19012.hp1 NA19062.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19087.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-163+16003dupT c.-163+16003dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977832
chrX:123977832	G G	GTT GTT	12	a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0101 others(9): Show a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0101 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0181 a0001c0001t0001g0261 a0001c0001t0001g0276 a0001c0001t0002g0144 a0001c0001t0003g0106	12	HG01109.hp1 HG01192.hp1 HG01255.hp1 others(9): Show HG01109.hp1 HG01192.hp1 HG01255.hp1 HG02074.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18964.hp1 NA18979.hp2 NA19003.hp2 NA19240.hp2	intron_variant	MODIFIER	c.-163+16002_-163+16 others(8): Show c.-163+16002_-163+16003dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977832
chrX:123977832	G G	GTTT GTTT	2	a0001c0001t0001g0052 a0001c0001t0001g0148 a0001c0001t0001g0052 a0001c0001t0001g0148	2	HG03688.hp1 NA21309.hp1 HG03688.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-163+16001_-163+16 others(9): Show c.-163+16001_-163+16003dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977832
chrX:123977832	GT GT	G G	96	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 others(93): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0076 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0108 a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0180 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0061 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	96	HG00621.hp1 HG00639.hp2 HG01081.hp1 others(93): Show HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01123.hp2 HG01243.hp1 HG01257.hp1 HG01258.hp1 HG01361.hp1 HG01496.hp1 HG01884.hp2 HG01952.hp1 HG02055.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02165.hp1 HG02257.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03491.hp2 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG04199.hp1 HG04204.hp1 NA18522.hp1 NA18906.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18982.hp1 NA18988.hp1 NA18991.hp2 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19043.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-163+16003delT c.-163+16003delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977832
chrX:123977832	GTT GTT	G G	13	a0001c0001t0001g0071 a0001c0001t0001g0169 a0001c0001t0001g0187 others(10): Show a0001c0001t0001g0071 a0001c0001t0001g0169 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0212 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0263 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0062	13	HG00280.hp1 HG01175.hp2 HG02258.hp1 others(10): Show HG00280.hp1 HG01175.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG02896.hp2 HG03209.hp1 HG03486.hp1 NA18986.hp1 NA18989.hp1 NA19063.hp1 NA19086.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+16002_-163+16 others(8): Show c.-163+16002_-163+16003delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977832
chrX:123977832	GTTTTTTT GTTTTTTT	G G	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+15997_-163+16 others(13): Show c.-163+15997_-163+16003delTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977832
chrX:123977839	T T	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+15983T>G c.-163+15983T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123977839
chrX:123977975	T T	TG TG	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-163+16122dupG c.-163+16122dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123977975
chrX:123978070	G G	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-163+16214G>A c.-163+16214G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123978070
chrX:123978154	C C	CT CT	42	a0001c0001t0001g0043 a0001c0001t0001g0056 a0001c0001t0001g0071 others(39): Show a0001c0001t0001g0043 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0135 a0001c0001t0001g0275 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	42	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(39): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03209.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18940.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18966.hp1 NA18967.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-163+16317dupT c.-163+16317dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123978154
chrX:123978154	C C	CTT CTT	2	a0001c0001t0002g0038 a0001c0001t0002g0046 a0001c0001t0002g0038 a0001c0001t0002g0046	2	HG03710.hp1 NA19077.hp1 HG03710.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-163+16316_-163+16 others(8): Show c.-163+16316_-163+16317dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123978154
chrX:123978154	CT CT	C C	11	a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0101 others(8): Show a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0101 a0001c0001t0001g0107 a0001c0001t0001g0111 a0001c0001t0001g0191 a0001c0001t0001g0200 a0001c0001t0001g0213 a0001c0001t0002g0222 a0001c0003t0001g0008 a0001c0003t0001g0078	11	HG01099.hp1 HG02015.hp1 HG02165.hp2 others(8): Show HG01099.hp1 HG02015.hp1 HG02165.hp2 HG02630.hp1 HG02683.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG03471.hp1 NA18964.hp1 NA19004.hp1	intron_variant	MODIFIER	c.-163+16317delT c.-163+16317delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123978154
chrX:123978864	A A	G G	43	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 others(40): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	43	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(40): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-163+17008A>G c.-163+17008A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123978864
chrX:123979601	T T	C C	1	a0001c0001t0001g0112 a0001c0001t0001g0112	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.-163+17745T>C c.-163+17745T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123979601
chrX:123979802	T T	G G	1	a0001c0001t0001g0096 a0001c0001t0001g0096	1	NA18954.hp1 NA18954.hp1	intron_variant	MODIFIER	c.-163+17946T>G c.-163+17946T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123979802
chrX:123979907	A A	G G	13	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(10): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	13	HG01243.hp1 HG01496.hp1 HG01884.hp2 others(10): Show HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+18051A>G c.-163+18051A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123979907
chrX:123980028	C C	T T	2	a0001c0001t0001g0076 a0001c0003t0001g0078 a0001c0001t0001g0076 a0001c0003t0001g0078	2	HG02886.hp1 HG03579.hp1 HG02886.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-163+18172C>T c.-163+18172C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123980028
chrX:123980280	T T	TG TG	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+18429dupG c.-163+18429dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123980280
chrX:123980284	G G	A A	1	a0001c0001t0001g0239 a0001c0001t0001g0239	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.-163+18428G>A c.-163+18428G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123980284
chrX:123980346	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+18490G>A c.-163+18490G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123980346
chrX:123980349	A A	G G	4	a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 others(1): Show a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 a0001c0001t0002g0136	4	HG00639.hp1 HG01361.hp2 HG02683.hp2 others(1): Show HG00639.hp1 HG01361.hp2 HG02683.hp2 HG03669.hp1	intron_variant	MODIFIER	c.-163+18493A>G c.-163+18493A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123980349
chrX:123980587	G G	A A	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	5	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(2): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+18731G>A c.-163+18731G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123980587
chrX:123980814	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+18958A>G c.-163+18958A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123980814
chrX:123981109	T T	TC TC	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+19254dupC c.-163+19254dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123981109
chrX:123981308	T T	TC TC	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+19455dupC c.-163+19455dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123981308
chrX:123981320	T T	TC TC	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+19467dupC c.-163+19467dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123981320
chrX:123981415	G G	GT GT	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+19561dupT c.-163+19561dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123981415
chrX:123981486	C C	CT CT	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+19635dupT c.-163+19635dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123981486
chrX:123981730	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+19874G>A c.-163+19874G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123981730
chrX:123981761	G G	GA GA	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+19910dupA c.-163+19910dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123981761
chrX:123982022	C C	CT CT	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+20168dupT c.-163+20168dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982022
chrX:123982061	C C	T T	1	a0001c0001t0001g0237 a0001c0001t0001g0237	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-163+20205C>T c.-163+20205C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982061
chrX:123982079	G G	GC GC	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+20225dupC c.-163+20225dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982079
chrX:123982098	T T	TG TG	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+20245dupG c.-163+20245dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982098
chrX:123982127	G G	A A	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	5	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(2): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+20271G>A c.-163+20271G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982127
chrX:123982176	T T	TA TA	19	a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0102 others(16): Show a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0126 a0001c0001t0001g0135 a0001c0001t0001g0204 a0001c0001t0001g0217 a0001c0001t0001g0223 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0248 a0001c0001t0001g0261 a0001c0001t0002g0031 a0001c0001t0002g0042 a0001c0001t0002g0051 a0001c0001t0002g0271 a0001c0001t0003g0244 a0001c0001t0005g0019	19	HG00597.hp1 HG00621.hp1 HG01123.hp1 others(16): Show HG00597.hp1 HG00621.hp1 HG01123.hp1 HG01361.hp2 HG01993.hp1 HG02055.hp1 HG02074.hp1 HG02145.hp1 HG02602.hp1 HG02738.hp1 HG03195.hp2 HG03209.hp1 HG03942.hp1 HG04228.hp1 NA18940.hp1 NA18955.hp1 NA18961.hp1 NA19000.hp1 NA19090.hp1	intron_variant	MODIFIER	c.-163+20338dupA c.-163+20338dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982176
chrX:123982176	TA TA	T T	2	a0001c0001t0002g0222 a0001c0003t0001g0008 a0001c0001t0002g0222 a0001c0003t0001g0008	2	HG02683.hp1 HG03471.hp1 HG02683.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+20338delA c.-163+20338delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982176
chrX:123982438	G G	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+20582G>C c.-163+20582G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982438
chrX:123982460	C C	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-163+20604C>T c.-163+20604C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982460
chrX:123982579	G G	GT GT	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+20726dupT c.-163+20726dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982579
chrX:123982731	A A	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+20875A>T c.-163+20875A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982731
chrX:123982734	C C	CT CT	3	a0001c0001t0001g0052 a0001c0001t0001g0247 a0001c0001t0002g0198 a0001c0001t0001g0052 a0001c0001t0001g0247 a0001c0001t0002g0198	3	HG03688.hp1 HG04199.hp1 NA19006.hp1 HG03688.hp1 HG04199.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+20893dupT c.-163+20893dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982734
chrX:123982734	CT CT	C C	6	a0001c0001t0001g0112 a0001c0001t0001g0187 a0001c0001t0001g0188 others(3): Show a0001c0001t0001g0112 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	6	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(3): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1 NA18948.hp1	intron_variant	MODIFIER	c.-163+20893delT c.-163+20893delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982734
chrX:123982752	CT CT	C C	1	a0001c0001t0001g0224 a0001c0001t0001g0224	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-163+20905delT c.-163+20905delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982752
chrX:123982762	G G	T T	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-163+20906G>T c.-163+20906G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982762
chrX:123982763	C C	G G	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-163+20907C>G c.-163+20907C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982763
chrX:123982765	CT CT	C C	270	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(267): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	270	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(267): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-163+20923delT c.-163+20923delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982765
chrX:123982765	CTT CTT	C C	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+20922_-163+20 others(8): Show c.-163+20922_-163+20923delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982765
chrX:123982766	T T	C C	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-163+20910T>C c.-163+20910T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982766
chrX:123982795	A A	C C	5	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(2): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0003t0001g0078	5	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(2): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02886.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-163+20939A>C c.-163+20939A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123982795
chrX:123982956	G G	GAA GAA	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+21101_-163+21 others(8): Show c.-163+21101_-163+21102dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123982956
chrX:123983042	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-163+21186C>T c.-163+21186C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983042
chrX:123983139	A A	G G	2	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0072 a0001c0001t0001g0073	2	HG01891.hp2 HG03139.hp1 HG01891.hp2 HG03139.hp1	intron_variant	MODIFIER	c.-163+21283A>G c.-163+21283A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983139
chrX:123983231	C C	CT CT	13	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(10): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	13	HG01243.hp1 HG01496.hp1 HG01884.hp2 others(10): Show HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+21387dupT c.-163+21387dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983231
chrX:123983259	C C	T T	16	a0001c0001t0001g0077 a0001c0001t0001g0203 a0001c0001t0001g0204 others(13): Show a0001c0001t0001g0077 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0219 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0254 a0001c0001t0001g0268 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244	16	HG00639.hp2 HG01081.hp1 HG01361.hp1 others(13): Show HG00639.hp2 HG01081.hp1 HG01361.hp1 HG02055.hp1 HG02109.hp2 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02615.hp2 HG02717.hp1 HG02723.hp2 HG02922.hp1 HG03195.hp1 HG03239.hp1 NA19240.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+21403C>T c.-163+21403C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983259
chrX:123983345	AG AG	A A	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+21491delG c.-163+21491delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983345
chrX:123983439	A A	T T	1	a0001c0001t0001g0267 a0001c0001t0001g0267	1	NA19081.hp2 NA19081.hp2	intron_variant	MODIFIER	c.-163+21583A>T c.-163+21583A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983439
chrX:123983485	A A	AT AT	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+21638dupT c.-163+21638dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983485
chrX:123983648	A A	G G	1	a0001c0001t0001g0160 a0001c0001t0001g0160	1	HG02257.hp1 HG02257.hp1	intron_variant	MODIFIER	c.-163+21792A>G c.-163+21792A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983648
chrX:123983952	A A	C C	1	a0001c0001t0001g0236 a0001c0001t0001g0236	1	HG01346.hp2 HG01346.hp2	intron_variant	MODIFIER	c.-163+22096A>C c.-163+22096A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983952
chrX:123983969	C C	CTTTTTT CTTTTTT	2	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0187 a0001c0001t0001g0188	2	HG02723.hp1 HG03486.hp1 HG02723.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+22117_-163+22 others(12): Show c.-163+22117_-163+22118insTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983969
chrX:123983969	C C	CTTTTTTT CTTTTTTT	1	a0001c0001t0002g0002 a0001c0001t0002g0002	1	HG02896.hp1 HG02896.hp1	intron_variant	MODIFIER	c.-163+22117_-163+22 others(13): Show c.-163+22117_-163+22118insTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983969
chrX:123983969	CTTTTCTT CTTTTCTT	C C	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-163+22118_-163+22 others(13): Show c.-163+22118_-163+22124delCTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983969
chrX:123983974	C C	CT CT	3	a0001c0001t0001g0085 a0001c0001t0001g0125 a0001c0001t0001g0177 a0001c0001t0001g0085 a0001c0001t0001g0125 a0001c0001t0001g0177	3	HG02809.hp2 HG03486.hp2 NA18999.hp2 HG02809.hp2 HG03486.hp2 NA18999.hp2	intron_variant	MODIFIER	c.-163+22139dupT c.-163+22139dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTT CTT	3	a0001c0001t0001g0105 a0001c0001t0001g0155 a0001c0001t0001g0225 a0001c0001t0001g0105 a0001c0001t0001g0155 a0001c0001t0001g0225	3	NA18949.hp2 NA19080.hp1 NA19080.hp2 NA18949.hp2 NA19080.hp1 NA19080.hp2	intron_variant	MODIFIER	c.-163+22138_-163+22 others(8): Show c.-163+22138_-163+22139dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTT CTTT	2	a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0003t0001g0008 a0001c0003t0001g0078	2	HG02886.hp1 HG03471.hp1 HG02886.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+22137_-163+22 others(9): Show c.-163+22137_-163+22139dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTCTT others(1): Show CTTTTCTTT	3	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0062 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0062	3	HG00280.hp1 HG01175.hp2 NA20805.hp1 HG00280.hp1 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+22122_-163+22 others(14): Show c.-163+22122_-163+22123insCTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTCTT others(2): Show CTTTTCTTTT	2	a0001c0001t0001g0242 a0001c0001t0002g0061 a0001c0001t0001g0242 a0001c0001t0002g0061	2	HG01081.hp1 HG01123.hp2 HG01081.hp1 HG01123.hp2	intron_variant	MODIFIER	c.-163+22122_-163+22 others(15): Show c.-163+22122_-163+22123insCTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTCTT others(3): Show CTTTTCTTTTT	10	a0001c0001t0001g0204 a0001c0001t0001g0207 a0001c0001t0001g0209 others(7): Show a0001c0001t0001g0204 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0219 a0001c0001t0001g0254 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244	10	HG00639.hp2 HG02055.hp1 HG02109.hp2 others(7): Show HG00639.hp2 HG02055.hp1 HG02109.hp2 HG02145.hp1 HG02486.hp1 HG02615.hp2 HG02723.hp2 HG02922.hp1 HG03195.hp1 NA19240.hp1	intron_variant	MODIFIER	c.-163+22122_-163+22 others(16): Show c.-163+22122_-163+22123insCTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTCTT others(4): Show CTTTTCTTTTTT	1	a0001c0001t0001g0203 a0001c0001t0001g0203	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.-163+22122_-163+22 others(17): Show c.-163+22122_-163+22123insCTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(2): Show CTTTTTTTTT	11	a0001c0001t0001g0053 a0001c0001t0001g0186 a0001c0001t0001g0195 others(8): Show a0001c0001t0001g0053 a0001c0001t0001g0186 a0001c0001t0001g0195 a0001c0001t0001g0201 a0001c0001t0001g0227 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0266 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226	11	HG02080.hp1 HG02165.hp1 HG02559.hp2 others(8): Show HG02080.hp1 HG02165.hp1 HG02559.hp2 NA18949.hp1 NA18954.hp2 NA18969.hp2 NA19003.hp1 NA19058.hp1 NA19065.hp1 NA19065.hp2 NA19091.hp1	intron_variant	MODIFIER	c.-163+22131_-163+22 others(15): Show c.-163+22131_-163+22139dupTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(3): Show CTTTTTTTTTT	37	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0147 others(34): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0147 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0214 a0001c0001t0001g0220 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0257 a0001c0001t0001g0262 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0222 a0001c0001t0002g0271	37	HG00438.hp2 HG01361.hp1 HG01884.hp1 others(34): Show HG00438.hp2 HG01361.hp1 HG01884.hp1 HG02071.hp1 HG02129.hp1 HG02451.hp2 HG02559.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02738.hp1 HG02895.hp1 HG02922.hp2 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18947.hp1 NA18955.hp1 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA18981.hp2 NA18986.hp1 NA18991.hp2 NA18999.hp1 NA19005.hp1 NA19055.hp1 NA19060.hp1 NA19064.hp1 NA19077.hp2 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-163+22130_-163+22 others(16): Show c.-163+22130_-163+22139dupTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(4): Show CTTTTTTTTTTT	16	a0001c0001t0001g0149 a0001c0001t0001g0200 a0001c0001t0001g0202 others(13): Show a0001c0001t0001g0149 a0001c0001t0001g0200 a0001c0001t0001g0202 a0001c0001t0001g0213 a0001c0001t0001g0215 a0001c0001t0001g0221 a0001c0001t0001g0224 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0252 a0001c0001t0001g0256 a0001c0001t0001g0263 a0001c0001t0002g0193	16	HG01175.hp1 HG01257.hp1 HG01258.hp1 others(13): Show HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02897.hp2 HG03017.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 NA18950.hp1 NA18970.hp1 NA18974.hp1 NA18989.hp1 NA19004.hp1 NA19011.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-163+22129_-163+22 others(17): Show c.-163+22129_-163+22139dupTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(5): Show CTTTTTTTTTTTT	1	a0001c0001t0001g0234 a0001c0001t0001g0234	1	NA18988.hp1 NA18988.hp1	intron_variant	MODIFIER	c.-163+22128_-163+22 others(18): Show c.-163+22128_-163+22139dupTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-163+22126_-163+22 others(20): Show c.-163+22126_-163+22139dupTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	5	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0172 others(2): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0190	5	HG01952.hp1 HG02257.hp2 HG02809.hp1 others(2): Show HG01952.hp1 HG02257.hp2 HG02809.hp1 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-163+22124_-163+22 others(22): Show c.-163+22124_-163+22139dupTTTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	2	a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0168 a0001c0001t0001g0169	2	HG02647.hp1 HG02896.hp2 HG02647.hp1 HG02896.hp2	intron_variant	MODIFIER	c.-163+22123_-163+22 others(23): Show c.-163+22123_-163+22139dupTTTTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	2	a0001c0001t0001g0171 a0001c0001t0004g0174 a0001c0001t0001g0171 a0001c0001t0004g0174	2	HG02280.hp2 HG02976.hp2 HG02280.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+22122_-163+22 others(24): Show c.-163+22122_-163+22139dupTTTTTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	2	a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0175 a0001c0001t0004g0269	2	HG02280.hp1 HG02818.hp2 HG02280.hp1 HG02818.hp2	intron_variant	MODIFIER	c.-163+22119_-163+22 others(27): Show c.-163+22119_-163+22139dupTTTTTTTTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	2	a0001c0001t0001g0076 a0001c0001t0001g0162 a0001c0001t0001g0076 a0001c0001t0001g0162	2	HG02818.hp1 HG03579.hp1 HG02818.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-163+22139_-163+22 others(29): Show c.-163+22139_-163+22140insTTTTTTTTTTTTTTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	C C	T T	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+22118C>T c.-163+22118C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983974
chrX:123983974	CT CT	C C	17	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(14): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0107 a0001c0001t0001g0178 a0001c0001t0001g0241 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0004c0005t0007g0083	17	HG01099.hp1 HG01243.hp1 HG01496.hp1 others(14): Show HG01099.hp1 HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA18941.hp2 NA19043.hp1 NA19089.hp1 NA20129.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-163+22139delT c.-163+22139delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	CTT CTT	C C	1	a0001c0001t0001g0223 a0001c0001t0001g0223	1	HG01123.hp1 HG01123.hp1	intron_variant	MODIFIER	c.-163+22138_-163+22 others(8): Show c.-163+22138_-163+22139delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	CTTTT CTTTT	C C	6	a0001c0001t0001g0095 a0001c0001t0001g0205 a0001c0001t0001g0217 others(3): Show a0001c0001t0001g0095 a0001c0001t0001g0205 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0239 a0001c0001t0001g0253	6	HG00621.hp1 NA18943.hp1 NA18945.hp1 others(3): Show HG00621.hp1 NA18943.hp1 NA18945.hp1 NA18957.hp1 NA18957.hp2 NA18964.hp2	intron_variant	MODIFIER	c.-163+22136_-163+22 others(10): Show c.-163+22136_-163+22139delTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983974	CTTTTTT CTTTTTT	C C	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+22134_-163+22 others(12): Show c.-163+22134_-163+22139delTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123983974
chrX:123983980	T T	C C	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-163+22124T>C c.-163+22124T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123983980
chrX:123984000	C C	T T	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-163+22144C>T c.-163+22144C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984000
chrX:123984225	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-163+22369G>A c.-163+22369G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984225
chrX:123984385	A A	G G	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+22529A>G c.-163+22529A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984385
chrX:123984490	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+22634C>T c.-163+22634C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984490
chrX:123984547	G G	T T	1	a0001c0001t0001g0161 a0001c0001t0001g0161	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.-163+22691G>T c.-163+22691G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984547
chrX:123984781	G G	A A	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.-163+22925G>A c.-163+22925G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984781
chrX:123984941	C C	T T	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA18999.hp2 NA18999.hp2	intron_variant	MODIFIER	c.-163+23085C>T c.-163+23085C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123984941
chrX:123985144	C C	CT CT	1	a0001c0002t0001g0064 a0001c0002t0001g0064	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.-163+23298dupT c.-163+23298dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123985144
chrX:123985317	C C	T T	2	a0001c0001t0001g0191 a0001c0001t0001g0200 a0001c0001t0001g0191 a0001c0001t0001g0200	2	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-163+23461C>T c.-163+23461C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985317
chrX:123985340	C C	T T	42	a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 others(39): Show a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	42	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(39): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-163+23484C>T c.-163+23484C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985340
chrX:123985418	A A	G G	1	a0001c0001t0002g0037 a0001c0001t0002g0037	1	HG00609.hp1 HG00609.hp1	intron_variant	MODIFIER	c.-163+23562A>G c.-163+23562A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985418
chrX:123985533	T T	C C	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.-163+23677T>C c.-163+23677T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985533
chrX:123985615	C C	A A	1	a0001c0001t0001g0184 a0001c0001t0001g0184	1	NA18999.hp1 NA18999.hp1	intron_variant	MODIFIER	c.-163+23759C>A c.-163+23759C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985615
chrX:123985718	G G	A A	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+23862G>A c.-163+23862G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985718
chrX:123985726	G G	A A	238	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(235): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0001g0143 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0008g0001 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226	238	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(235): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01993.hp1 HG02015.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18994.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+23870G>A c.-163+23870G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985726
chrX:123985737	A A	AT AT	2	a0001c0001t0001g0084 a0001c0001t0002g0151 a0001c0001t0001g0084 a0001c0001t0002g0151	2	HG01891.hp1 HG02886.hp2 HG01891.hp1 HG02886.hp2	intron_variant	MODIFIER	c.-163+23895dupT c.-163+23895dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123985737
chrX:123985737	AT AT	A A	2	a0001c0001t0001g0212 a0001c0001t0001g0238 a0001c0001t0001g0212 a0001c0001t0001g0238	2	NA18986.hp1 NA19055.hp1 NA18986.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-163+23895delT c.-163+23895delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123985737
chrX:123985797	C C	T T	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.-163+23941C>T c.-163+23941C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123985797
chrX:123986032	C C	G G	1	a0001c0001t0005g0027 a0001c0001t0005g0027	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.-163+24176C>G c.-163+24176C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123986032
chrX:123986043	T T	C C	1	a0001c0001t0001g0252 a0001c0001t0001g0252	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.-163+24187T>C c.-163+24187T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123986043
chrX:123986052	A A	T T	5	a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 others(2): Show a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051	5	NA18975.hp2 NA18979.hp1 NA19000.hp1 others(2): Show NA18975.hp2 NA18979.hp1 NA19000.hp1 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-163+24196A>T c.-163+24196A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123986052
chrX:123986137	CAT CAT	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-163+24286_-163+24 others(8): Show c.-163+24286_-163+24287delAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123986137
chrX:123986567	CTG CTG	C C	1	a0001c0001t0001g0127 a0001c0001t0001g0127	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-163+24716_-163+24 others(8): Show c.-163+24716_-163+24717delTG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123986567
chrX:123986844	A A	AT AT	1	a0001c0001t0002g0062 a0001c0001t0002g0062	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.-163+25001dupT c.-163+25001dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123986844
chrX:123986844	AT AT	A A	1	a0001c0001t0001g0196 a0001c0001t0001g0196	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.-163+25001delT c.-163+25001delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123986844
chrX:123986991	A A	T T	3	a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0264 a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0264	3	HG00438.hp2 HG02451.hp2 HG02818.hp1 HG00438.hp2 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.-163+25135A>T c.-163+25135A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123986991
chrX:123986992	T T	A A	1	a0001c0001t0001g0089 a0001c0001t0001g0089	1	HG00597.hp2 HG00597.hp2	intron_variant	MODIFIER	c.-163+25136T>A c.-163+25136T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123986992
chrX:123987043	AGTGCAG AGTGCAG	A A	1	a0001c0001t0001g0072 a0001c0001t0001g0072	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-163+25188_-163+25 others(12): Show c.-163+25188_-163+25193delGTGCAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123987043
chrX:123987149	T T	C C	238	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(235): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0001g0143 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0008g0001 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226	238	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(235): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01993.hp1 HG02015.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18994.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-163+25293T>C c.-163+25293T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123987149
chrX:123987218	C C	G G	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-163+25362C>G c.-163+25362C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123987218
chrX:123987270	G G	C C	1	a0001c0001t0001g0143 a0001c0001t0001g0143	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-163+25414G>C c.-163+25414G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123987270
chrX:123987553	A A	AT AT	1	a0001c0001t0001g0221 a0001c0001t0001g0221	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-163+25704dupT c.-163+25704dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123987553
chrX:123988009	A A	G G	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-163+26153A>G c.-163+26153A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123988009
chrX:123988440	G G	A A	1	a0001c0001t0001g0072 a0001c0001t0001g0072	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-163+26584G>A c.-163+26584G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123988440
chrX:123989235	TG TG	T T	42	a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 others(39): Show a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	42	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(39): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-163+27380delG c.-163+27380delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123989235
chrX:123989583	T T	C C	1	a0001c0001t0001g0149 a0001c0001t0001g0149	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.-163+27727T>C c.-163+27727T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123989583
chrX:123989607	C C	CT CT	6	a0001c0001t0001g0134 a0001c0001t0001g0190 a0001c0001t0002g0046 others(3): Show a0001c0001t0001g0134 a0001c0001t0001g0190 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050	6	HG02257.hp2 NA18975.hp2 NA18979.hp1 others(3): Show HG02257.hp2 NA18975.hp2 NA18979.hp1 NA19003.hp2 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-163+27766dupT c.-163+27766dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123989607
chrX:123989607	CT CT	C C	2	a0001c0001t0001g0043 a0001c0001t0001g0241 a0001c0001t0001g0043 a0001c0001t0001g0241	2	NA19089.hp1 NA19090.hp1 NA19089.hp1 NA19090.hp1	intron_variant	MODIFIER	c.-163+27766delT c.-163+27766delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123989607
chrX:123989801	G G	A A	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-163+27945G>A c.-163+27945G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123989801
chrX:123989931	A A	AT AT	1	a0001c0001t0001g0093 a0001c0001t0001g0093	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.-163+28084dupT c.-163+28084dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123989931
chrX:123989957	G G	A A	1	a0001c0001t0001g0098 a0001c0001t0001g0098	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.-163+28101G>A c.-163+28101G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123989957
chrX:123990285	T T	C C	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-163+28429T>C c.-163+28429T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990285
chrX:123990286	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+28430T>C c.-163+28430T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990286
chrX:123990357	A A	G G	42	a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 others(39): Show a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	42	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(39): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-163+28501A>G c.-163+28501A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990357
chrX:123990464	C C	CT CT	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-163+28608_-163+28 others(7): Show c.-163+28608_-163+28609insT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990464
chrX:123990465	A A	C C	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-163+28609A>C c.-163+28609A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990465
chrX:123990466	G G	A A	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-163+28610G>A c.-163+28610G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990466
chrX:123990586	T T	TG TG	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-163+28731dupG c.-163+28731dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123990586
chrX:123990676	A A	G G	2	a0001c0001t0002g0036 a0001c0001t0002g0047 a0001c0001t0002g0036 a0001c0001t0002g0047	2	HG01515.hp1 HG01517.hp2 HG01515.hp1 HG01517.hp2	intron_variant	MODIFIER	c.-163+28820A>G c.-163+28820A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990676
chrX:123990686	G G	C C	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-163+28830G>C c.-163+28830G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990686
chrX:123990790	C C	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-163+28934C>T c.-163+28934C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990790
chrX:123990805	G G	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-163+28949G>A c.-163+28949G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990805
chrX:123990817	C C	G G	2	a0001c0001t0001g0076 a0001c0003t0001g0078 a0001c0001t0001g0076 a0001c0003t0001g0078	2	HG02886.hp1 HG03579.hp1 HG02886.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-163+28961C>G c.-163+28961C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990817
chrX:123990933	T T	C C	32	a0001c0001t0001g0055 a0001c0001t0001g0079 a0001c0001t0001g0081 others(29): Show a0001c0001t0001g0055 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0089 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0149 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0182 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0008g0001 a0001c0007t0001g0165	32	HG00597.hp2 HG01358.hp1 HG01496.hp2 others(29): Show HG00597.hp2 HG01358.hp1 HG01496.hp2 HG01928.hp1 HG01934.hp1 HG02083.hp1 HG02135.hp1 HG03239.hp2 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18948.hp1 NA18949.hp2 NA18957.hp1 NA18964.hp1 NA18965.hp1 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18994.hp1 NA19007.hp1 NA19009.hp1 NA19062.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19080.hp1 NA19081.hp1 NA19085.hp1 NA19088.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-163+29077T>C c.-163+29077T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990933
chrX:123990986	G G	C C	1	a0001c0001t0001g0179 a0001c0001t0001g0179	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-163+29130G>C c.-163+29130G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123990986
chrX:123991223	T T	C C	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-163+29367T>C c.-163+29367T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991223
chrX:123991248	G G	A A	2	a0001c0001t0001g0191 a0001c0001t0001g0200 a0001c0001t0001g0191 a0001c0001t0001g0200	2	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-163+29392G>A c.-163+29392G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991248
chrX:123991357	A A	AT AT	7	a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0125 others(4): Show a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0125 a0001c0001t0002g0044 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	7	HG01167.hp1 HG02056.hp1 HG02280.hp1 others(4): Show HG01167.hp1 HG02056.hp1 HG02280.hp1 HG02818.hp2 HG02965.hp1 HG02976.hp2 HG03486.hp2	intron_variant	MODIFIER	c.-163+29514dupT c.-163+29514dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123991357
chrX:123991357	AT AT	A A	2	a0001c0001t0001g0183 a0001c0001t0001g0189 a0001c0001t0001g0183 a0001c0001t0001g0189	2	HG02258.hp1 HG02698.hp1 HG02258.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-163+29514delT c.-163+29514delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123991357
chrX:123991439	G G	A A	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.-163+29583G>A c.-163+29583G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991439
chrX:123991496	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-163+29640G>A c.-163+29640G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991496
chrX:123991666	C C	CT CT	11	a0001c0001t0001g0055 a0001c0001t0001g0074 a0001c0001t0001g0086 others(8): Show a0001c0001t0001g0055 a0001c0001t0001g0074 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0099 a0001c0001t0001g0125 a0001c0001t0001g0138 a0001c0001t0001g0148 a0001c0001t0001g0160 a0001c0001t0002g0029 a0001c0003t0001g0008	11	HG01081.hp2 HG01167.hp1 HG01496.hp2 others(8): Show HG01081.hp2 HG01167.hp1 HG01496.hp2 HG02257.hp1 HG02615.hp1 HG02622.hp2 HG02965.hp1 HG03471.hp1 HG03486.hp2 HG03669.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-162-29686dupT c.-162-29686dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123991666
chrX:123991801	A A	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-29566A>T c.-162-29566A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991801
chrX:123991861	T T	TAGTAGAG others(3): Show TAGTAGAGACA	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-29506_-162-29 others(16): Show c.-162-29506_-162-29505insAGTAGAGACA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991861
chrX:123991862	C C	G G	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-29505C>G c.-162-29505C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123991862
chrX:123992047	A A	G G	48	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(45): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0257 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04204.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-162-29320A>G c.-162-29320A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123992047
chrX:123992505	T T	C C	3	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0085 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0085	3	HG00673.hp1 HG02015.hp1 NA18999.hp2 HG00673.hp1 HG02015.hp1 NA18999.hp2	intron_variant	MODIFIER	c.-162-28862T>C c.-162-28862T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123992505
chrX:123992647	T T	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-28720T>A c.-162-28720T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123992647
chrX:123992730	G G	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-28637G>T c.-162-28637G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123992730
chrX:123992805	G G	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-28562G>T c.-162-28562G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123992805
chrX:123993031	TG TG	T T	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-162-28333delG c.-162-28333delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123993031
chrX:123993226	GAGGCTGA others(13): Show GAGGCTGAGTCCAGGAGTTCA	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-28138_-162-28 others(26): Show c.-162-28138_-162-28119delGCTGAGTCCAGGAGTTCAAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123993226
chrX:123993378	AT AT	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-27985delT c.-162-27985delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123993378
chrX:123993430	A A	AT AT	3	a0001c0001t0001g0080 a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0080 a0001c0001t0001g0147 a0001c0001t0001g0162	3	HG00642.hp1 HG02451.hp2 HG02818.hp1 HG00642.hp1 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.-162-27927dupT c.-162-27927dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123993430
chrX:123993595	G G	T T	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-162-27772G>T c.-162-27772G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123993595
chrX:123993810	A A	G G	13	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(10): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	13	HG01243.hp1 HG01496.hp1 HG01884.hp2 others(10): Show HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-162-27557A>G c.-162-27557A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123993810
chrX:123993921	G G	A A	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.-162-27446G>A c.-162-27446G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123993921
chrX:123994016	C C	T T	9	a0001c0001t0001g0054 a0001c0001t0001g0137 a0001c0001t0001g0166 others(6): Show a0001c0001t0001g0054 a0001c0001t0001g0137 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	9	HG00639.hp1 HG01952.hp1 HG02280.hp2 others(6): Show HG00639.hp1 HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03669.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-162-27351C>T c.-162-27351C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123994016
chrX:123994187	A A	G G	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-27180A>G c.-162-27180A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123994187
chrX:123995147	A A	G G	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-162-26220A>G c.-162-26220A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995147
chrX:123995196	A A	G G	5	a0001c0001t0001g0067 a0001c0001t0001g0076 a0001c0001t0001g0167 others(2): Show a0001c0001t0001g0067 a0001c0001t0001g0076 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0003t0001g0078	5	HG01243.hp1 HG02886.hp1 HG02896.hp2 others(2): Show HG01243.hp1 HG02886.hp1 HG02896.hp2 HG02897.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-162-26171A>G c.-162-26171A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995196
chrX:123995209	A A	G G	1	a0001c0001t0001g0274 a0001c0001t0001g0274	1	HG00558.hp2 HG00558.hp2	intron_variant	MODIFIER	c.-162-26158A>G c.-162-26158A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995209
chrX:123995383	T T	G G	1	a0001c0001t0001g0237 a0001c0001t0001g0237	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-162-25984T>G c.-162-25984T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995383
chrX:123995423	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-25944A>G c.-162-25944A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995423
chrX:123995563	G G	A A	170	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0012 others(167): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0002c0004t0001g0255 a0003c0006t0001g0226	170	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(167): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00735.hp2 HG01081.hp1 HG01106.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01952.hp1 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18522.hp1 NA18906.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-162-25804G>A c.-162-25804G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995563
chrX:123995567	G G	A A	170	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0012 others(167): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0002c0004t0001g0255 a0003c0006t0001g0226	170	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(167): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00735.hp2 HG01081.hp1 HG01106.hp1 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01952.hp1 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18522.hp1 NA18906.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-162-25800G>A c.-162-25800G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995567
chrX:123995695	G G	GAA GAA	1	a0001c0001t0001g0134 a0001c0001t0001g0134	1	NA19003.hp2 NA19003.hp2	intron_variant	MODIFIER	c.-162-25663_-162-25 others(8): Show c.-162-25663_-162-25662dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123995695
chrX:123995695	GA GA	G G	10	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(7): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	10	HG01496.hp1 HG01884.hp2 HG02630.hp2 others(7): Show HG01496.hp1 HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-162-25662delA c.-162-25662delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123995695
chrX:123995739	C C	T T	2	a0001c0001t0001g0190 a0001c0001t0001g0243 a0001c0001t0001g0190 a0001c0001t0001g0243	2	HG02257.hp2 HG03195.hp2 HG02257.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-162-25628C>T c.-162-25628C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123995739
chrX:123996196	T T	G G	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.-162-25171T>G c.-162-25171T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996196
chrX:123996203	G G	A A	5	a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 others(2): Show a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051	5	NA18975.hp2 NA18979.hp1 NA19000.hp1 others(2): Show NA18975.hp2 NA18979.hp1 NA19000.hp1 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-162-25164G>A c.-162-25164G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996203
chrX:123996309	A A	G G	1	a0001c0001t0001g0183 a0001c0001t0001g0183	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-162-25058A>G c.-162-25058A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996309
chrX:123996419	C C	G G	3	a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177	3	HG02109.hp1 HG02809.hp2 HG03540.hp2 HG02109.hp1 HG02809.hp2 HG03540.hp2	intron_variant	MODIFIER	c.-162-24948C>G c.-162-24948C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996419
chrX:123996548	T T	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-24819T>C c.-162-24819T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996548
chrX:123996558	A A	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-24809A>T c.-162-24809A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996558
chrX:123996565	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-24802G>A c.-162-24802G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996565
chrX:123996601	G G	GT GT	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-162-24758dupT c.-162-24758dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123996601
chrX:123996748	T T	C C	1	a0001c0001t0001g0178 a0001c0001t0001g0178	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.-162-24619T>C c.-162-24619T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123996748
chrX:123997063	TC TC	T T	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-162-24302delC c.-162-24302delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123997063
chrX:123997181	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-24186C>T c.-162-24186C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123997181
chrX:123997389	G G	A A	274	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(271): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	274	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(271): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-23978G>A c.-162-23978G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123997389
chrX:123997648	G G	GT GT	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-162-23712dupT c.-162-23712dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123997648
chrX:123997664	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-23703G>A c.-162-23703G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123997664
chrX:123997753	G G	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-23614G>A c.-162-23614G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123997753
chrX:123997892	C C	T T	4	a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 others(1): Show a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 a0001c0001t0002g0136	4	HG00639.hp1 HG01361.hp2 HG02683.hp2 others(1): Show HG00639.hp1 HG01361.hp2 HG02683.hp2 HG03669.hp1	intron_variant	MODIFIER	c.-162-23475C>T c.-162-23475C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123997892
chrX:123997940	C C	A A	1	a0001c0001t0001g0262 a0001c0001t0001g0262	1	NA18968.hp1 NA18968.hp1	intron_variant	MODIFIER	c.-162-23427C>A c.-162-23427C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123997940
chrX:123998168	A A	AT AT	27	a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 others(24): Show a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0001g0127 a0001c0001t0001g0153 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0224 a0001c0001t0001g0230 a0001c0001t0001g0235 a0001c0001t0002g0018 a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0002g0042 a0001c0001t0002g0045 a0001c0001t0002g0271 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0002t0001g0063	27	HG00597.hp1 HG01891.hp2 HG01952.hp1 others(24): Show HG00597.hp1 HG01891.hp2 HG01952.hp1 HG02148.hp2 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03139.hp1 HG03491.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03942.hp1 HG04184.hp1 NA18522.hp1 NA18906.hp1 NA18944.hp1 NA18960.hp1 NA18974.hp1 NA18995.hp1 NA19067.hp1 NA19083.hp1 NA20300.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-162-23181dupT c.-162-23181dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998168
chrX:123998168	AT AT	A A	3	a0001c0001t0001g0108 a0001c0001t0001g0241 a0001c0001t0002g0025 a0001c0001t0001g0108 a0001c0001t0001g0241 a0001c0001t0002g0025	3	HG03704.hp2 NA18982.hp1 NA19089.hp1 HG03704.hp2 NA18982.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-162-23181delT c.-162-23181delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998168
chrX:123998333	A A	AT AT	2	a0001c0001t0001g0014 a0001c0001t0001g0093 a0001c0001t0001g0014 a0001c0001t0001g0093	2	HG01192.hp1 HG02622.hp1 HG01192.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-162-23018dupT c.-162-23018dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998333
chrX:123998333	AT AT	A A	1	a0001c0001t0001g0212 a0001c0001t0001g0212	1	NA18986.hp1 NA18986.hp1	intron_variant	MODIFIER	c.-162-23018delT c.-162-23018delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998333
chrX:123998390	C C	T T	1	a0001c0001t0001g0253 a0001c0001t0001g0253	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-162-22977C>T c.-162-22977C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123998390
chrX:123998485	G G	GT GT	4	a0001c0001t0001g0053 a0001c0001t0001g0080 a0001c0001t0001g0093 others(1): Show a0001c0001t0001g0053 a0001c0001t0001g0080 a0001c0001t0001g0093 a0001c0001t0001g0180	4	HG00642.hp1 HG01192.hp1 HG02559.hp2 others(1): Show HG00642.hp1 HG01192.hp1 HG02559.hp2 NA18959.hp1	intron_variant	MODIFIER	c.-162-22868dupT c.-162-22868dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998485
chrX:123998485	G G	GTT GTT	2	a0001c0001t0002g0060 a0001c0003t0001g0008 a0001c0001t0002g0060 a0001c0003t0001g0008	2	HG03471.hp1 NA20805.hp1 HG03471.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-22869_-162-22 others(8): Show c.-162-22869_-162-22868dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998485
chrX:123998485	GT GT	G G	2	a0001c0001t0001g0214 a0001c0001t0002g0151 a0001c0001t0001g0214 a0001c0001t0002g0151	2	HG01891.hp1 NA19005.hp1 HG01891.hp1 NA19005.hp1	intron_variant	MODIFIER	c.-162-22868delT c.-162-22868delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998485
chrX:123998587	C C	CATCT CATCT	16	a0001c0001t0001g0017 a0001c0001t0001g0066 a0001c0001t0001g0068 others(13): Show a0001c0001t0001g0017 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0075 a0001c0001t0001g0082 a0001c0001t0001g0099 a0001c0001t0001g0117 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0131 a0001c0001t0001g0140 a0001c0001t0001g0159 a0001c0001t0001g0189 a0001c0001t0005g0027 a0001c0001t0009g0139 a0001c0002t0001g0063	16	HG00735.hp1 HG00738.hp1 HG01069.hp1 others(13): Show HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01256.hp1 HG02258.hp1 HG03098.hp1 HG03239.hp2 NA18906.hp1 NA18960.hp1 NA18995.hp1 NA19043.hp1 NA19066.hp1 NA20129.hp2 NA20752.hp1	intron_variant	MODIFIER	c.-162-22734_-162-22 others(10): Show c.-162-22734_-162-22731dupTCTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998587
chrX:123998587	CATCT CATCT	C C	145	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(142): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0088 a0001c0001t0001g0091 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0126 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0158 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0190 a0001c0001t0001g0195 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0215 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0259 a0001c0001t0003g0106 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0008g0001 a0001c0001t0010g0164 a0001c0002t0001g0069 a0001c0003t0001g0078 a0001c0007t0001g0165 a0004c0005t0007g0083	145	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(142): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00735.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01175.hp1 HG01255.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02040.hp1 HG02071.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02135.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG02976.hp2 HG03139.hp1 HG03209.hp1 HG03490.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18970.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18999.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19011.hp1 NA19055.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19086.hp1 NA19087.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-22734_-162-22 others(10): Show c.-162-22734_-162-22731delTCTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998587
chrX:123998587	CATCTATC others(1): Show CATCTATCT	C C	61	a0001c0001t0001g0007 a0001c0001t0001g0067 a0001c0001t0001g0077 others(58): Show a0001c0001t0001g0007 a0001c0001t0001g0067 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0132 a0001c0001t0001g0138 a0001c0001t0001g0160 a0001c0001t0001g0170 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0196 a0001c0001t0001g0200 a0001c0001t0001g0202 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0242 a0001c0001t0001g0249 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0268 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0034 a0002c0004t0001g0255 a0003c0006t0001g0226	61	HG00280.hp1 HG00621.hp1 HG00639.hp2 others(58): Show HG00280.hp1 HG00621.hp1 HG00639.hp2 HG00673.hp1 HG01081.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp1 HG01258.hp1 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02257.hp1 HG02273.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03195.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03654.hp1 HG04184.hp1 HG04204.hp1 NA18747.hp1 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18957.hp2 NA18964.hp2 NA18969.hp2 NA18977.hp1 NA19005.hp1 NA19006.hp1 NA19080.hp2 NA19087.hp2 NA19091.hp1 NA19240.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-162-22738_-162-22 others(14): Show c.-162-22738_-162-22731delTCTATCTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998587
chrX:123998587	CATCTATC others(5): Show CATCTATCTATCT	C C	4	a0001c0001t0001g0179 a0001c0001t0001g0203 a0001c0001t0001g0207 others(1): Show a0001c0001t0001g0179 a0001c0001t0001g0203 a0001c0001t0001g0207 a0001c0001t0001g0247	4	HG02486.hp1 HG02572.hp1 HG04199.hp1 others(1): Show HG02486.hp1 HG02572.hp1 HG04199.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-162-22742_-162-22 others(18): Show c.-162-22742_-162-22731delTCTATCTATCTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998587
chrX:123998587	CATCTATC others(9): Show CATCTATCTATCTATCT	C C	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.-162-22746_-162-22 others(22): Show c.-162-22746_-162-22731delTCTATCTATCTATCTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998587
chrX:123998613	T T	G G	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-22754T>G c.-162-22754T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123998613
chrX:123998633	T T	A A	8	a0001c0001t0002g0018 a0001c0001t0002g0023 a0001c0001t0002g0026 others(5): Show a0001c0001t0002g0018 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0041 a0001c0001t0002g0044	8	HG00140.hp1 HG00735.hp2 HG01257.hp2 others(5): Show HG00140.hp1 HG00735.hp2 HG01257.hp2 HG01993.hp1 HG02056.hp1 HG02148.hp2 HG03669.hp2 HG04115.hp1	intron_variant	MODIFIER	c.-162-22734T>A c.-162-22734T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123998633
chrX:123998724	CT CT	C C	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-162-22640delT c.-162-22640delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998724
chrX:123998892	G G	A A	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-22475G>A c.-162-22475G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123998892
chrX:123998949	GA GA	G G	3	a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0002g0059 a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0002g0059	3	HG00280.hp1 HG03491.hp1 HG03492.hp1 HG00280.hp1 HG03491.hp1 HG03492.hp1	intron_variant	MODIFIER	c.-162-22407delA c.-162-22407delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123998949
chrX:123999065	C C	T T	2	a0001c0001t0001g0108 a0001c0001t0001g0155 a0001c0001t0001g0108 a0001c0001t0001g0155	2	NA18949.hp2 NA18982.hp1 NA18949.hp2 NA18982.hp1	intron_variant	MODIFIER	c.-162-22302C>T c.-162-22302C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999065
chrX:123999128	G G	GT GT	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-162-22234dupT c.-162-22234dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123999128
chrX:123999134	A A	G G	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0105 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-162-22233A>G c.-162-22233A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999134
chrX:123999414	T T	TCTCCCTC others(15): Show TCTCCCTCCTCCTACCCTCCTCC	1	a0004c0005t0007g0083 a0004c0005t0007g0083	1	NA18941.hp2 NA18941.hp2	intron_variant	MODIFIER	c.-162-21947_-162-21 others(28): Show c.-162-21947_-162-21926dupTCCTCCTACCCTCCTCCCTCCC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123999414
chrX:123999425	C C	A A	1	a0001c0001t0001g0223 a0001c0001t0001g0223	1	HG01123.hp1 HG01123.hp1	intron_variant	MODIFIER	c.-162-21942C>A c.-162-21942C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999425
chrX:123999515	C C	T T	1	a0001c0001t0001g0195 a0001c0001t0001g0195	1	NA19065.hp1 NA19065.hp1	intron_variant	MODIFIER	c.-162-21852C>T c.-162-21852C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999515
chrX:123999609	T T	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-21758T>A c.-162-21758T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999609
chrX:123999704	T T	G G	1	a0001c0001t0002g0041 a0001c0001t0002g0041	1	HG01257.hp2 HG01257.hp2	intron_variant	MODIFIER	c.-162-21663T>G c.-162-21663T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999704
chrX:123999910	G G	A A	1	a0001c0001t0002g0070 a0001c0001t0002g0070	1	HG00558.hp1 HG00558.hp1	intron_variant	MODIFIER	c.-162-21457G>A c.-162-21457G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999910
chrX:123999917	G G	GT GT	3	a0001c0001t0001g0149 a0001c0001t0001g0154 a0001c0001t0001g0225 a0001c0001t0001g0149 a0001c0001t0001g0154 a0001c0001t0001g0225	3	HG02027.hp1 HG04184.hp2 NA19080.hp1 HG02027.hp1 HG04184.hp2 NA19080.hp1	intron_variant	MODIFIER	c.-162-21435dupT c.-162-21435dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	123999917
chrX:123999925	T T	A A	43	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 others(40): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	43	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(40): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-162-21442T>A c.-162-21442T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999925
chrX:123999935	T T	A A	23	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0075 others(20): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0085 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0099 a0001c0001t0001g0104 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0148 a0001c0001t0001g0152 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0144 a0001c0001t0003g0106	23	HG00558.hp2 HG00642.hp1 HG00673.hp1 others(20): Show HG00558.hp2 HG00642.hp1 HG00673.hp1 HG01081.hp2 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01517.hp1 HG02015.hp1 HG02273.hp1 HG02602.hp1 HG02735.hp1 NA18747.hp1 NA18940.hp1 NA18966.hp1 NA18975.hp1 NA18979.hp2 NA18999.hp2 NA19012.hp1 NA19066.hp1 NA19240.hp2 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-162-21432T>A c.-162-21432T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	123999935
chrX:124000129	G G	T T	1	a0001c0001t0002g0059 a0001c0001t0002g0059	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.-162-21238G>T c.-162-21238G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124000129
chrX:124000141	ATAT ATAT	A A	2	a0001c0001t0001g0105 a0003c0006t0001g0226 a0001c0001t0001g0105 a0003c0006t0001g0226	2	NA19080.hp2 NA19091.hp1 NA19080.hp2 NA19091.hp1	intron_variant	MODIFIER	c.-162-21224_-162-21 others(9): Show c.-162-21224_-162-21222delATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124000141
chrX:124000146	G G	A A	83	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 others(80): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0243 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008	83	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(80): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01346.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01952.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18522.hp1 NA18906.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19043.hp1 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-21221G>A c.-162-21221G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124000146
chrX:124000380	C C	G G	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-20987C>G c.-162-20987C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124000380
chrX:124000472	T T	C C	1	a0001c0001t0001g0201 a0001c0001t0001g0201	1	HG02165.hp1 HG02165.hp1	intron_variant	MODIFIER	c.-162-20895T>C c.-162-20895T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124000472
chrX:124000520	A A	C C	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	NA19087.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-162-20847A>C c.-162-20847A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124000520
chrX:124000925	A A	T T	43	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 others(40): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	43	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(40): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-162-20442A>T c.-162-20442A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124000925
chrX:124001095	T T	A A	1	a0001c0001t0001g0228 a0001c0001t0001g0228	1	NA18947.hp1 NA18947.hp1	intron_variant	MODIFIER	c.-162-20272T>A c.-162-20272T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124001095
chrX:124001216	G G	A A	2	a0001c0001t0001g0112 a0001c0001t0001g0153 a0001c0001t0001g0112 a0001c0001t0001g0153	2	NA18948.hp1 NA19067.hp1 NA18948.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-20151G>A c.-162-20151G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124001216
chrX:124001223	TG TG	T T	1	a0001c0001t0001g0147 a0001c0001t0001g0147	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.-162-20141delG c.-162-20141delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124001223
chrX:124001247	C C	T T	3	a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0125 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0125	3	HG01167.hp1 HG02965.hp1 HG03486.hp2 HG01167.hp1 HG02965.hp1 HG03486.hp2	intron_variant	MODIFIER	c.-162-20120C>T c.-162-20120C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124001247
chrX:124001450	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-19917A>G c.-162-19917A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124001450
chrX:124001586	T T	C C	1	a0001c0001t0002g0144 a0001c0001t0002g0144	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.-162-19781T>C c.-162-19781T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124001586
chrX:124001839	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-19528T>C c.-162-19528T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124001839
chrX:124002004	G G	T T	1	a0001c0001t0001g0224 a0001c0001t0001g0224	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-162-19363G>T c.-162-19363G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002004
chrX:124002070	A A	C C	1	a0001c0001t0001g0240 a0001c0001t0001g0240	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.-162-19297A>C c.-162-19297A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002070
chrX:124002320	T T	A A	1	a0001c0001t0001g0113 a0001c0001t0001g0113	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.-162-19047T>A c.-162-19047T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002320
chrX:124002339	C C	T T	5	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0004g0003	5	HG01884.hp2 HG02630.hp2 HG02976.hp1 others(2): Show HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-162-19028C>T c.-162-19028C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002339
chrX:124002353	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-19014C>T c.-162-19014C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002353
chrX:124002792	TTTTC TTTTC	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-18555_-162-18 others(10): Show c.-162-18555_-162-18552delCTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124002792
chrX:124002811	TC TC	T T	3	a0001c0001t0001g0074 a0001c0001t0001g0138 a0001c0001t0001g0160 a0001c0001t0001g0074 a0001c0001t0001g0138 a0001c0001t0001g0160	3	HG02257.hp1 HG02615.hp1 HG02622.hp2 HG02257.hp1 HG02615.hp1 HG02622.hp2	intron_variant	MODIFIER	c.-162-18555delC c.-162-18555delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002811
chrX:124002812	C C	CT CT	16	a0001c0001t0001g0067 a0001c0001t0001g0086 a0001c0001t0001g0090 others(13): Show a0001c0001t0001g0067 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0099 a0001c0001t0001g0125 a0001c0001t0001g0148 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0062	16	HG00609.hp1 HG01081.hp2 HG01167.hp1 others(13): Show HG00609.hp1 HG01081.hp2 HG01167.hp1 HG01175.hp2 HG01243.hp1 HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG03486.hp2 HG03710.hp1 NA18522.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-162-18540dupT c.-162-18540dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124002812
chrX:124002812	CT CT	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-18540delT c.-162-18540delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124002812
chrX:124002830	AT AT	A A	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-18532delT c.-162-18532delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124002830
chrX:124002948	A A	AC AC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-18416dupC c.-162-18416dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124002948
chrX:124002949	C C	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-18418C>A c.-162-18418C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002949
chrX:124002968	T T	TG TG	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-18399_-162-18 others(7): Show c.-162-18399_-162-18398insG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124002968
chrX:124003157	A A	T T	5	a0001c0001t0001g0079 a0001c0001t0001g0108 a0001c0001t0001g0115 others(2): Show a0001c0001t0001g0079 a0001c0001t0001g0108 a0001c0001t0001g0115 a0001c0001t0001g0155 a0001c0001t0001g0179	5	HG01934.hp1 HG02083.hp1 NA18949.hp2 others(2): Show HG01934.hp1 HG02083.hp1 NA18949.hp2 NA18982.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-162-18210A>T c.-162-18210A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003157
chrX:124003289	AG AG	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-18077delG c.-162-18077delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003289
chrX:124003308	G G	A A	2	a0001c0001t0001g0260 a0001c0001t0002g0193 a0001c0001t0001g0260 a0001c0001t0002g0193	2	NA18950.hp1 NA19003.hp1 NA18950.hp1 NA19003.hp1	intron_variant	MODIFIER	c.-162-18059G>A c.-162-18059G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003308
chrX:124003402	G G	A A	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-162-17965G>A c.-162-17965G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003402
chrX:124003476	C C	T T	4	a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0028 others(1): Show a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0044	4	HG00140.hp1 HG00735.hp2 HG02056.hp1 others(1): Show HG00140.hp1 HG00735.hp2 HG02056.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-162-17891C>T c.-162-17891C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003476
chrX:124003502	C C	A A	83	a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 others(80): Show a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0076 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0243 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0078	83	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(80): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01346.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01952.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18522.hp1 NA18906.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19043.hp1 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-17865C>A c.-162-17865C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003502
chrX:124003587	A A	AT AT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-17772dupT c.-162-17772dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124003587
chrX:124003704	G G	T T	1	a0001c0001t0002g0041 a0001c0001t0002g0041	1	HG01257.hp2 HG01257.hp2	intron_variant	MODIFIER	c.-162-17663G>T c.-162-17663G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003704
chrX:124003713	C C	T T	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-162-17654C>T c.-162-17654C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003713
chrX:124003979	T T	A A	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-162-17388T>A c.-162-17388T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124003979
chrX:124004014	G G	GA GA	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-17351dupA c.-162-17351dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004014
chrX:124004194	A A	AG AG	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-17172dupG c.-162-17172dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004194
chrX:124004271	TA TA	T T	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-17091delA c.-162-17091delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004271
chrX:124004369	A A	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-16998A>T c.-162-16998A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004369
chrX:124004405	A A	AC AC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-16961dupC c.-162-16961dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004405
chrX:124004410	T T	TG TG	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-16957_-162-16 others(7): Show c.-162-16957_-162-16956insG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004410
chrX:124004448	T T	C C	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-162-16919T>C c.-162-16919T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004448
chrX:124004559	T T	TC TC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-16806dupC c.-162-16806dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004559
chrX:124004591	C C	CCATT CCATT	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-162-16767_-162-16 others(10): Show c.-162-16767_-162-16764dupCATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004591
chrX:124004727	G G	A A	14	a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0065 others(11): Show a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	14	HG01106.hp1 HG01243.hp1 HG01496.hp1 others(11): Show HG01106.hp1 HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-162-16640G>A c.-162-16640G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004727
chrX:124004742	C C	CT CT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-16617dupT c.-162-16617dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124004742
chrX:124004750	T T	C C	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-162-16617T>C c.-162-16617T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004750
chrX:124004751	C C	T T	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-162-16616C>T c.-162-16616C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004751
chrX:124004752	T T	C C	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.-162-16615T>C c.-162-16615T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004752
chrX:124004914	A A	G G	7	a0001c0001t0001g0192 a0001c0001t0001g0205 a0001c0001t0001g0217 others(4): Show a0001c0001t0001g0192 a0001c0001t0001g0205 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0239 a0001c0001t0001g0249 a0001c0001t0001g0253	7	HG00621.hp1 HG02129.hp1 NA18941.hp1 others(4): Show HG00621.hp1 HG02129.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18957.hp2 NA18964.hp2	intron_variant	MODIFIER	c.-162-16453A>G c.-162-16453A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124004914
chrX:124005001	CTTAAGT CTTAAGT	C C	5	a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 others(2): Show a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0251 a0001c0001t0001g0263	5	NA18981.hp2 NA18988.hp1 NA18989.hp1 others(2): Show NA18981.hp2 NA18988.hp1 NA18989.hp1 NA19011.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-162-16362_-162-16 others(12): Show c.-162-16362_-162-16357delAGTTTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124005001
chrX:124005079	C C	T T	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-162-16288C>T c.-162-16288C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124005079
chrX:124005116	GTAAA GTAAA	G G	1	a0001c0001t0001g0172 a0001c0001t0001g0172	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-162-16248_-162-16 others(10): Show c.-162-16248_-162-16245delAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124005116
chrX:124005178	G G	GT GT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-16183dupT c.-162-16183dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124005178
chrX:124005367	T T	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.-162-16000T>A c.-162-16000T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124005367
chrX:124005452	A A	AC AC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-15914dupC c.-162-15914dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124005452
chrX:124005460	A A	AC AC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-15903dupC c.-162-15903dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124005460
chrX:124005853	T T	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-15514T>C c.-162-15514T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124005853
chrX:124005949	TC TC	T T	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-15415delC c.-162-15415delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124005949
chrX:124005976	G G	A A	2	a0001c0001t0001g0230 a0001c0001t0001g0235 a0001c0001t0001g0230 a0001c0001t0001g0235	2	HG03654.hp1 HG04184.hp1 HG03654.hp1 HG04184.hp1	intron_variant	MODIFIER	c.-162-15391G>A c.-162-15391G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124005976
chrX:124006072	T T	TG TG	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-15294dupG c.-162-15294dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006072
chrX:124006124	TG TG	T T	1	a0001c0001t0001g0180 a0001c0001t0001g0180	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.-162-15238delG c.-162-15238delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006124
chrX:124006323	G G	GT GT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-15039dupT c.-162-15039dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006323
chrX:124006341	A A	G G	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.-162-15026A>G c.-162-15026A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006341
chrX:124006387	T T	C C	1	a0001c0001t0001g0186 a0001c0001t0001g0186	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.-162-14980T>C c.-162-14980T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006387
chrX:124006436	A A	AT AT	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-14911dupT c.-162-14911dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006436
chrX:124006436	AT AT	A A	189	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(186): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0004c0005t0007g0083	189	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(186): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp2 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-14911delT c.-162-14911delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006436
chrX:124006436	ATT ATT	A A	11	a0001c0001t0001g0104 a0001c0001t0001g0154 a0001c0001t0001g0188 others(8): Show a0001c0001t0001g0104 a0001c0001t0001g0154 a0001c0001t0001g0188 a0001c0001t0001g0221 a0001c0001t0001g0229 a0001c0001t0001g0238 a0001c0001t0002g0045 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0003t0001g0008 a0003c0006t0001g0226	11	HG00597.hp1 HG02027.hp1 HG02723.hp1 others(8): Show HG00597.hp1 HG02027.hp1 HG02723.hp1 HG03471.hp1 NA18962.hp1 NA19012.hp1 NA19055.hp1 NA19063.hp1 NA19064.hp2 NA19083.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-162-14912_-162-14 others(8): Show c.-162-14912_-162-14911delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006436
chrX:124006436	ATTT ATTT	A A	44	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(41): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	44	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(41): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19077.hp1 NA19082.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-162-14913_-162-14 others(9): Show c.-162-14913_-162-14911delTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006436
chrX:124006436	ATTTT ATTTT	A A	1	a0001c0001t0002g0036 a0001c0001t0002g0036	1	HG01517.hp2 HG01517.hp2	intron_variant	MODIFIER	c.-162-14914_-162-14 others(10): Show c.-162-14914_-162-14911delTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006436
chrX:124006583	T T	G G	1	a0001c0001t0001g0206 a0001c0001t0001g0206	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.-162-14784T>G c.-162-14784T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006583
chrX:124006605	A A	AT AT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-14755dupT c.-162-14755dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006605
chrX:124006629	C C	T T	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	NA19090.hp1 NA19090.hp1	intron_variant	MODIFIER	c.-162-14738C>T c.-162-14738C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006629
chrX:124006660	T T	C C	46	a0001c0001t0001g0043 a0001c0001t0001g0150 a0001c0001t0002g0011 others(43): Show a0001c0001t0001g0043 a0001c0001t0001g0150 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	46	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(43): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG01993.hp2 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-162-14707T>C c.-162-14707T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006660
chrX:124006661	G G	C C	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-162-14706G>C c.-162-14706G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006661
chrX:124006682	G G	A A	1	a0001c0001t0002g0271 a0001c0001t0002g0271	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-162-14685G>A c.-162-14685G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006682
chrX:124006682	GC GC	G G	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-14682delC c.-162-14682delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006682
chrX:124006730	T T	C C	2	a0001c0001t0001g0077 a0001c0001t0001g0117 a0001c0001t0001g0077 a0001c0001t0001g0117	2	HG02717.hp1 HG03239.hp2 HG02717.hp1 HG03239.hp2	intron_variant	MODIFIER	c.-162-14637T>C c.-162-14637T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006730
chrX:124006731	G G	A A	1	a0001c0001t0001g0077 a0001c0001t0001g0077	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.-162-14636G>A c.-162-14636G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006731
chrX:124006832	G G	GT GT	1	a0001c0001t0001g0180 a0001c0001t0001g0180	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.-162-14531dupT c.-162-14531dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124006832
chrX:124006846	T T	C C	1	a0001c0001t0001g0229 a0001c0001t0001g0229	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-162-14521T>C c.-162-14521T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006846
chrX:124006862	T T	C C	2	a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0019 a0001c0001t0005g0027	2	HG00597.hp1 NA18960.hp1 HG00597.hp1 NA18960.hp1	intron_variant	MODIFIER	c.-162-14505T>C c.-162-14505T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006862
chrX:124006919	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-14448T>C c.-162-14448T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006919
chrX:124006978	G G	T T	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-162-14389G>T c.-162-14389G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124006978
chrX:124007011	TA TA	T T	1	a0001c0001t0003g0216 a0001c0001t0003g0216	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.-162-14351delA c.-162-14351delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007011
chrX:124007017	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-14350T>C c.-162-14350T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007017
chrX:124007075	A A	C C	1	a0001c0001t0001g0149 a0001c0001t0001g0149	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.-162-14292A>C c.-162-14292A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007075
chrX:124007085	C C	CGTACTCC others(1): Show CGTACTCCT	1	a0001c0007t0001g0165 a0001c0007t0001g0165	1	NA19065.hp2 NA19065.hp2	intron_variant	MODIFIER	c.-162-14280_-162-14 others(14): Show c.-162-14280_-162-14273dupTACTCCTG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007085
chrX:124007092	C C	CT CT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-14274dupT c.-162-14274dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007092
chrX:124007095	G G	T T	1	a0001c0001t0001g0229 a0001c0001t0001g0229	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.-162-14272G>T c.-162-14272G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007095
chrX:124007118	T T	TC TC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-14248dupC c.-162-14248dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007118
chrX:124007264	A A	AC AC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-14101dupC c.-162-14101dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007264
chrX:124007305	TC TC	T T	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-14059delC c.-162-14059delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007305
chrX:124007414	T T	TC TC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13952dupC c.-162-13952dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007414
chrX:124007429	T T	TC TC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13938_-162-13 others(7): Show c.-162-13938_-162-13937insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007429
chrX:124007445	G G	GT GT	2	a0001c0001t0001g0114 a0001c0001t0001g0153 a0001c0001t0001g0114 a0001c0001t0001g0153	2	NA18994.hp1 NA19067.hp1 NA18994.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13913dupT c.-162-13913dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007445
chrX:124007445	GT GT	G G	53	a0001c0001t0001g0005 a0001c0001t0001g0105 a0001c0001t0001g0183 others(50): Show a0001c0001t0001g0005 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0002c0004t0001g0255 a0003c0006t0001g0226	53	HG00438.hp2 HG01123.hp1 HG01175.hp1 others(50): Show HG00438.hp2 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02071.hp1 HG02080.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1	intron_variant	MODIFIER	c.-162-13913delT c.-162-13913delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007445
chrX:124007555	A A	G G	1	a0001c0001t0001g0211 a0001c0001t0001g0211	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.-162-13812A>G c.-162-13812A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007555
chrX:124007764	T T	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-13603T>A c.-162-13603T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007764
chrX:124007780	TA TA	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.-162-13586delA c.-162-13586delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007780
chrX:124007790	C C	T T	9	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(6): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	9	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(6): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-13577C>T c.-162-13577C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007790
chrX:124007799	C C	T T	1	a0001c0001t0002g0021 a0001c0001t0002g0021	1	NA18969.hp1 NA18969.hp1	intron_variant	MODIFIER	c.-162-13568C>T c.-162-13568C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007799
chrX:124007828	GT GT	G G	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13533delT c.-162-13533delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124007828
chrX:124007959	C C	CA CA	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13408_-162-13 others(7): Show c.-162-13408_-162-13407insA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124007959
chrX:124008210	T T	C C	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.-162-13157T>C c.-162-13157T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008210
chrX:124008212	T T	TC TC	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13155_-162-13 others(7): Show c.-162-13155_-162-13154insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008212
chrX:124008215	C C	CT CT	3	a0001c0001t0001g0076 a0001c0001t0001g0088 a0001c0001t0001g0180 a0001c0001t0001g0076 a0001c0001t0001g0088 a0001c0001t0001g0180	3	HG03579.hp1 NA18959.hp1 NA19087.hp1 HG03579.hp1 NA18959.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-162-13137dupT c.-162-13137dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124008215
chrX:124008215	C C	T T	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13152C>T c.-162-13152C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008215
chrX:124008215	CT CT	C C	1	a0001c0001t0001g0137 a0001c0001t0001g0137	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.-162-13137delT c.-162-13137delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124008215
chrX:124008216	T T	C C	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-13151T>C c.-162-13151T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008216
chrX:124008300	G G	A A	1	a0001c0001t0001g0245 a0001c0001t0001g0245	1	NA18955.hp1 NA18955.hp1	intron_variant	MODIFIER	c.-162-13067G>A c.-162-13067G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008300
chrX:124008353	A A	G G	1	a0001c0001t0001g0152 a0001c0001t0001g0152	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.-162-13014A>G c.-162-13014A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008353
chrX:124008362	C C	T T	1	a0001c0001t0001g0162 a0001c0001t0001g0162	1	HG02818.hp1 HG02818.hp1	intron_variant	MODIFIER	c.-162-13005C>T c.-162-13005C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008362
chrX:124008393	A A	G G	3	a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034	3	HG00597.hp1 NA18944.hp1 NA18960.hp1 HG00597.hp1 NA18944.hp1 NA18960.hp1	intron_variant	MODIFIER	c.-162-12974A>G c.-162-12974A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008393
chrX:124008718	A A	C C	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-162-12649A>C c.-162-12649A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008718
chrX:124008802	A A	G G	1	a0001c0001t0001g0127 a0001c0001t0001g0127	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-162-12565A>G c.-162-12565A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008802
chrX:124008907	T T	G G	107	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(104): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0003g0106 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	107	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(104): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp1 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-12460T>G c.-162-12460T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008907
chrX:124008972	G G	A A	1	a0001c0001t0001g0150 a0001c0001t0001g0150	1	HG01993.hp2 HG01993.hp2	intron_variant	MODIFIER	c.-162-12395G>A c.-162-12395G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124008972
chrX:124009081	ATATT ATATT	A A	1	a0001c0001t0001g0111 a0001c0001t0001g0111	1	HG02165.hp2 HG02165.hp2	intron_variant	MODIFIER	c.-162-12284_-162-12 others(10): Show c.-162-12284_-162-12281delATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009081
chrX:124009392	C C	CAGGT CAGGT	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.-162-11924_-162-11 others(10): Show c.-162-11924_-162-11921dupGTAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009392
chrX:124009392	C C	CAGGTAGG others(13): Show CAGGTAGGTAGGTAGGTAGGT	2	a0001c0001t0001g0072 a0001c0001t0001g0189 a0001c0001t0001g0072 a0001c0001t0001g0189	2	HG02258.hp1 HG03139.hp1 HG02258.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-162-11940_-162-11 others(26): Show c.-162-11940_-162-11921dupGTAGGTAGGTAGGTAGGTAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009392
chrX:124009392	CAGGT CAGGT	C C	75	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0013 others(72): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0084 a0001c0001t0001g0105 a0001c0001t0001g0120 a0001c0001t0001g0128 a0001c0001t0001g0138 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0004g0269 a0001c0002t0001g0064 a0001c0002t0001g0069 a0003c0006t0001g0226	75	HG00438.hp2 HG00621.hp1 HG00673.hp1 others(72): Show HG00438.hp2 HG00621.hp1 HG00673.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01884.hp2 HG01891.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02165.hp1 HG02257.hp1 HG02280.hp1 HG02559.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03098.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03579.hp1 HG03831.hp1 HG04199.hp1 HG04204.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19011.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20300.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-11924_-162-11 others(10): Show c.-162-11924_-162-11921delGTAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009392
chrX:124009392	CAGGTAGG others(1): Show CAGGTAGGT	C C	9	a0001c0001t0001g0015 a0001c0001t0001g0053 a0001c0001t0001g0196 others(6): Show a0001c0001t0001g0015 a0001c0001t0001g0053 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0214 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0002c0004t0001g0255	9	HG02559.hp2 HG02818.hp2 HG02976.hp1 others(6): Show HG02559.hp2 HG02818.hp2 HG02976.hp1 HG02976.hp2 HG03491.hp2 HG03540.hp1 NA18969.hp2 NA19005.hp1 NA19090.hp2	intron_variant	MODIFIER	c.-162-11928_-162-11 others(14): Show c.-162-11928_-162-11921delGTAGGTAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009392
chrX:124009392	CAGGTAGG others(5): Show CAGGTAGGTAGGT	C C	8	a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 others(5): Show a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0119 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	8	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(5): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG01261.hp1 HG02451.hp1 HG02622.hp1 NA20129.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-11932_-162-11 others(18): Show c.-162-11932_-162-11921delGTAGGTAGGTAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009392
chrX:124009397	A A	AG AG	1	a0001c0001t0001g0180 a0001c0001t0001g0180	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.-162-11968dupG c.-162-11968dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009397
chrX:124009427	G G	GTAGA GTAGA	4	a0001c0001t0001g0056 a0001c0001t0001g0103 a0001c0001t0001g0109 others(1): Show a0001c0001t0001g0056 a0001c0001t0001g0103 a0001c0001t0001g0109 a0001c0001t0001g0145	4	HG04228.hp1 NA18947.hp2 NA18967.hp1 others(1): Show HG04228.hp1 NA18947.hp2 NA18967.hp1 NA19085.hp1	intron_variant	MODIFIER	c.-162-11937_-162-11 others(10): Show c.-162-11937_-162-11936insATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009427
chrX:124009427	G G	GTAGATAG others(1): Show GTAGATAGA	2	a0001c0001t0001g0096 a0001c0001t0001g0134 a0001c0001t0001g0096 a0001c0001t0001g0134	2	NA18954.hp1 NA19003.hp2 NA18954.hp1 NA19003.hp2	intron_variant	MODIFIER	c.-162-11937_-162-11 others(14): Show c.-162-11937_-162-11936insATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009427
chrX:124009431	G G	A A	9	a0001c0001t0001g0007 a0001c0001t0001g0056 a0001c0001t0001g0096 others(6): Show a0001c0001t0001g0007 a0001c0001t0001g0056 a0001c0001t0001g0096 a0001c0001t0001g0103 a0001c0001t0001g0109 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0145 a0001c0001t0001g0180	9	HG00673.hp1 HG01109.hp1 HG04228.hp1 others(6): Show HG00673.hp1 HG01109.hp1 HG04228.hp1 NA18947.hp2 NA18954.hp1 NA18959.hp1 NA18967.hp1 NA19003.hp2 NA19085.hp1	intron_variant	MODIFIER	c.-162-11936G>A c.-162-11936G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009431
chrX:124009431	G G	GTAGA GTAGA	43	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0054 others(40): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0104 a0001c0001t0001g0110 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0182 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0002g0144 a0001c0001t0003g0106 a0001c0001t0008g0001 a0001c0007t0001g0165	43	HG00597.hp2 HG00639.hp1 HG00642.hp1 others(40): Show HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00738.hp1 HG01081.hp2 HG01106.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01496.hp2 HG01928.hp1 HG01934.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02135.hp1 HG02451.hp2 HG02602.hp1 HG02735.hp1 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG04184.hp2 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18948.hp1 NA18957.hp1 NA18965.hp1 NA18981.hp1 NA18984.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-162-11933_-162-11 others(10): Show c.-162-11933_-162-11932insATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009431
chrX:124009431	G G	GTAGATAG others(1): Show GTAGATAGA	19	a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0094 others(16): Show a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0114 a0001c0001t0001g0125 a0001c0001t0001g0155 a0001c0001t0001g0159 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0177 a0001c0001t0001g0181 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0007g0141 a0001c0001t0009g0139 a0004c0005t0007g0083	19	HG00735.hp1 HG01069.hp1 HG01167.hp1 others(16): Show HG00735.hp1 HG01069.hp1 HG01167.hp1 HG01361.hp2 HG01517.hp1 HG02074.hp1 HG02109.hp1 HG02148.hp1 HG02809.hp2 HG02965.hp1 HG03486.hp2 NA18612.hp1 NA18941.hp2 NA18949.hp2 NA18964.hp1 NA18977.hp1 NA18994.hp1 NA19062.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-162-11933_-162-11 others(14): Show c.-162-11933_-162-11932insATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009431
chrX:124009431	G G	GTAGATAG others(5): Show GTAGATAGATAGA	6	a0001c0001t0001g0082 a0001c0001t0001g0108 a0001c0001t0001g0111 others(3): Show a0001c0001t0001g0082 a0001c0001t0001g0108 a0001c0001t0001g0111 a0001c0001t0001g0117 a0001c0001t0001g0121 a0001c0001t0001g0122	6	HG02165.hp2 HG03239.hp2 NA18950.hp2 others(3): Show HG02165.hp2 HG03239.hp2 NA18950.hp2 NA18968.hp2 NA18982.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-162-11933_-162-11 others(18): Show c.-162-11933_-162-11932insATAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009431
chrX:124009431	G G	GTAGATAG others(9): Show GTAGATAGATAGATAGA	2	a0001c0001t0001g0146 a0001c0001t0001g0161 a0001c0001t0001g0146 a0001c0001t0001g0161	2	HG01433.hp1 NA18991.hp1 HG01433.hp1 NA18991.hp1	intron_variant	MODIFIER	c.-162-11933_-162-11 others(22): Show c.-162-11933_-162-11932insATAGATAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009431
chrX:124009431	GTAGGTAG others(9): Show GTAGGTAGGTAGGTAGA	G G	2	a0001c0001t0002g0070 a0001c0001t0006g0010 a0001c0001t0002g0070 a0001c0001t0006g0010	2	HG00558.hp1 HG01346.hp1 HG00558.hp1 HG01346.hp1	intron_variant	MODIFIER	c.-162-11932_-162-11 others(22): Show c.-162-11932_-162-11917delGTAGGTAGGTAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009431
chrX:124009435	G G	A A	87	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(84): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0002g0144 a0001c0001t0003g0106 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	87	HG00597.hp2 HG00639.hp1 HG00642.hp1 others(84): Show HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01928.hp1 HG01934.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02451.hp2 HG02602.hp1 HG02735.hp1 HG02809.hp2 HG02965.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18977.hp1 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp1 NA19085.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-11932G>A c.-162-11932G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009435
chrX:124009435	G G	GTAGA GTAGA	12	a0001c0001t0001g0148 a0001c0001t0001g0153 a0001c0001t0001g0205 others(9): Show a0001c0001t0001g0148 a0001c0001t0001g0153 a0001c0001t0001g0205 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0253 a0001c0001t0001g0273 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0003g0208 a0001c0001t0003g0244	12	HG02055.hp1 HG02486.hp1 HG02896.hp1 others(9): Show HG02055.hp1 HG02486.hp1 HG02896.hp1 HG02922.hp1 NA18943.hp1 NA18945.hp1 NA18966.hp1 NA18975.hp1 NA18979.hp2 NA19067.hp1 NA19240.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-162-11929_-162-11 others(10): Show c.-162-11929_-162-11928insATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009435
chrX:124009435	G G	GTAGATAG others(1): Show GTAGATAGA	6	a0001c0001t0001g0087 a0001c0001t0001g0092 a0001c0001t0001g0107 others(3): Show a0001c0001t0001g0087 a0001c0001t0001g0092 a0001c0001t0001g0107 a0001c0001t0001g0143 a0001c0001t0001g0274 a0001c0001t0002g0136	6	HG00558.hp2 HG01099.hp1 HG01943.hp1 others(3): Show HG00558.hp2 HG01099.hp1 HG01943.hp1 HG02273.hp1 HG02683.hp2 HG03130.hp1	intron_variant	MODIFIER	c.-162-11929_-162-11 others(14): Show c.-162-11929_-162-11928insATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009435
chrX:124009435	G G	GTAGATAG others(5): Show GTAGATAGATAGA	2	a0001c0001t0001g0123 a0001c0001t0001g0140 a0001c0001t0001g0123 a0001c0001t0001g0140	2	HG01074.hp1 NA20752.hp1 HG01074.hp1 NA20752.hp1	intron_variant	MODIFIER	c.-162-11929_-162-11 others(18): Show c.-162-11929_-162-11928insATAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009435
chrX:124009435	G G	GTAGATAG others(9): Show GTAGATAGATAGATAGA	1	a0001c0001t0001g0129 a0001c0001t0001g0129	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.-162-11929_-162-11 others(22): Show c.-162-11929_-162-11928insATAGATAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009435
chrX:124009435	GTAGGTAG others(5): Show GTAGGTAGGTAGA	G G	35	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 others(32): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0021 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0185 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0058	35	HG00140.hp1 HG00438.hp1 HG00597.hp1 others(32): Show HG00140.hp1 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA19000.hp1 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-162-11928_-162-11 others(18): Show c.-162-11928_-162-11917delGTAGGTAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009435
chrX:124009435	GTAGGTAG others(9): Show GTAGGTAGGTAGATAGA	G G	1	a0001c0001t0002g0259 a0001c0001t0002g0259	1	NA19064.hp2 NA19064.hp2	intron_variant	MODIFIER	c.-162-11928_-162-11 others(22): Show c.-162-11928_-162-11913delGTAGGTAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009435
chrX:124009439	G G	A A	132	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(129): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0203 a0001c0001t0001g0205 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0225 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0250 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0261 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0198 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0003t0001g0078 a0001c0007t0001g0165 a0004c0005t0007g0083	132	HG00558.hp2 HG00597.hp2 HG00621.hp1 others(129): Show HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp2 HG02723.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02922.hp1 HG02965.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19081.hp1 NA19085.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA19240.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-11928G>A c.-162-11928G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009439
chrX:124009439	G G	GTAGA GTAGA	3	a0001c0001t0001g0188 a0001c0001t0001g0194 a0001c0001t0001g0239 a0001c0001t0001g0188 a0001c0001t0001g0194 a0001c0001t0001g0239	3	HG01884.hp1 HG02723.hp1 NA18964.hp2 HG01884.hp1 HG02723.hp1 NA18964.hp2	intron_variant	MODIFIER	c.-162-11925_-162-11 others(10): Show c.-162-11925_-162-11924insATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009439
chrX:124009439	G G	GTAGATAG others(5): Show GTAGATAGATAGA	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	NA19087.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-162-11925_-162-11 others(18): Show c.-162-11925_-162-11924insATAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009439
chrX:124009439	G G	GTAGATAG others(9): Show GTAGATAGATAGATAGA	1	a0001c0001t0001g0187 a0001c0001t0001g0187	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-11925_-162-11 others(22): Show c.-162-11925_-162-11924insATAGATAGATAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009439
chrX:124009439	GTAGGTAG others(1): Show GTAGGTAGA	G G	6	a0001c0001t0001g0190 a0001c0001t0002g0020 a0001c0001t0002g0022 others(3): Show a0001c0001t0001g0190 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0039 a0001c0001t0002g0041 a0001c0001t0002g0057	6	HG01257.hp2 HG02080.hp2 HG02257.hp2 others(3): Show HG01257.hp2 HG02080.hp2 HG02257.hp2 HG03831.hp2 NA18990.hp1 NA19011.hp2	intron_variant	MODIFIER	c.-162-11924_-162-11 others(14): Show c.-162-11924_-162-11917delGTAGATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009439
chrX:124009443	G G	A A	212	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(209): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0191 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	212	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(209): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-11924G>A c.-162-11924G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009443
chrX:124009443	G G	GTAGATAG others(1): Show GTAGATAGA	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-162-11897_-162-11 others(14): Show c.-162-11897_-162-11890dupGATAGATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009443
chrX:124009443	G G	GTAGATAG others(5): Show GTAGATAGATAGA	1	a0001c0001t0001g0249 a0001c0001t0001g0249	1	NA18941.hp1 NA18941.hp1	intron_variant	MODIFIER	c.-162-11901_-162-11 others(18): Show c.-162-11901_-162-11890dupGATAGATAGATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009443
chrX:124009443	G G	GTAGATAG others(9): Show GTAGATAGATAGATAGA	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-11905_-162-11 others(22): Show c.-162-11905_-162-11890dupGATAGATAGATAGATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009443
chrX:124009443	G G	GTAGGTAG others(21): Show GTAGGTAGGTAGGTAGGTAGATAGATAGA	1	a0001c0001t0001g0192 a0001c0001t0001g0192	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.-162-11921_-162-11 others(34): Show c.-162-11921_-162-11920insGTAGGTAGGTAGGTAGATAGATAG ATAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009443
chrX:124009443	GTAGA GTAGA	G G	1	a0001c0001t0001g0235 a0001c0001t0001g0235	1	HG04184.hp1 HG04184.hp1	intron_variant	MODIFIER	c.-162-11893_-162-11 others(10): Show c.-162-11893_-162-11890delGATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009443
chrX:124009447	A A	G G	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-162-11920A>G c.-162-11920A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009447
chrX:124009451	A A	G G	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-162-11916A>G c.-162-11916A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009451
chrX:124009455	A A	G G	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.-162-11912A>G c.-162-11912A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124009455
chrX:124009832	G G	GT GT	1	a0001c0001t0001g0199 a0001c0001t0001g0199	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.-162-11528dupT c.-162-11528dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124009832
chrX:124010094	G G	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-11273G>A c.-162-11273G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124010094
chrX:124010253	A A	T T	58	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(55): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	58	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(55): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-11114A>T c.-162-11114A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124010253
chrX:124010789	G G	A A	4	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(1): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169	4	HG02647.hp1 HG02809.hp1 HG02896.hp2 others(1): Show HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1	intron_variant	MODIFIER	c.-162-10578G>A c.-162-10578G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124010789
chrX:124010836	A A	G G	1	a0001c0001t0001g0187 a0001c0001t0001g0187	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-10531A>G c.-162-10531A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124010836
chrX:124011079	G G	GT GT	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-10284dupT c.-162-10284dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124011079
chrX:124011103	G G	C C	59	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(56): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	59	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(56): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-10264G>C c.-162-10264G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011103
chrX:124011216	A A	C C	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-10151A>C c.-162-10151A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011216
chrX:124011382	C C	T T	273	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(270): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	273	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(270): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-9985C>T c.-162-9985C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011382
chrX:124011414	T T	C C	1	a0001c0001t0001g0199 a0001c0001t0001g0199	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.-162-9953T>C c.-162-9953T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011414
chrX:124011504	A A	G G	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.-162-9863A>G c.-162-9863A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011504
chrX:124011945	T T	C C	1	a0001c0001t0001g0132 a0001c0001t0001g0132	1	NA18747.hp1 NA18747.hp1	intron_variant	MODIFIER	c.-162-9422T>C c.-162-9422T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011945
chrX:124011971	C C	G G	3	a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0206 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0206	3	HG01884.hp1 HG02559.hp1 HG02922.hp2 HG01884.hp1 HG02559.hp1 HG02922.hp2	intron_variant	MODIFIER	c.-162-9396C>G c.-162-9396C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124011971
chrX:124012003	A A	AG AG	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-162-9361dupG c.-162-9361dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124012003
chrX:124012078	G G	A A	273	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(270): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	273	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(270): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-9289G>A c.-162-9289G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124012078
chrX:124012100	G G	A A	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-162-9267G>A c.-162-9267G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124012100
chrX:124012221	C C	T T	9	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(6): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	9	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(6): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-9146C>T c.-162-9146C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124012221
chrX:124012385	CTGT CTGT	C C	2	a0001c0001t0001g0099 a0001c0001t0001g0148 a0001c0001t0001g0099 a0001c0001t0001g0148	2	HG01081.hp2 NA21309.hp1 HG01081.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-162-8977_-162-897 others(7): Show c.-162-8977_-162-8975delGTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124012385
chrX:124012484	T T	G G	1	a0001c0001t0001g0149 a0001c0001t0001g0149	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.-162-8883T>G c.-162-8883T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124012484
chrX:124012962	T T	TC TC	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-162-8400dupC c.-162-8400dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124012962
chrX:124013253	A A	G G	1	a0001c0001t0001g0201 a0001c0001t0001g0201	1	HG02165.hp1 HG02165.hp1	intron_variant	MODIFIER	c.-162-8114A>G c.-162-8114A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124013253
chrX:124013322	CAA CAA	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-8043_-162-804 others(6): Show c.-162-8043_-162-8042delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124013322
chrX:124013324	A A	AAC AAC	11	a0001c0001t0001g0076 a0001c0001t0001g0107 a0001c0001t0001g0166 others(8): Show a0001c0001t0001g0076 a0001c0001t0001g0107 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0184 a0001c0001t0002g0198	11	HG01099.hp1 HG01952.hp1 HG02280.hp2 others(8): Show HG01099.hp1 HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03579.hp1 NA18522.hp1 NA18999.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-162-8020_-162-801 others(6): Show c.-162-8020_-162-8019dupAC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124013324
chrX:124013324	A A	AACAC AACAC	2	a0001c0001t0001g0180 a0001c0001t0010g0164 a0001c0001t0001g0180 a0001c0001t0010g0164	2	NA18959.hp1 NA20129.hp1 NA18959.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-162-8022_-162-801 others(8): Show c.-162-8022_-162-8019dupACAC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124013324
chrX:124013324	AAC AAC	A A	53	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(50): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	53	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(50): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG03471.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-162-8020_-162-801 others(6): Show c.-162-8020_-162-8019delAC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124013324
chrX:124013505	A A	G G	1	a0001c0001t0002g0031 a0001c0001t0002g0031	1	HG01993.hp1 HG01993.hp1	intron_variant	MODIFIER	c.-162-7862A>G c.-162-7862A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124013505
chrX:124013644	C C	T T	2	a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0046 a0001c0001t0002g0048	2	NA18975.hp2 NA19077.hp1 NA18975.hp2 NA19077.hp1	intron_variant	MODIFIER	c.-162-7723C>T c.-162-7723C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124013644
chrX:124013661	C C	A A	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	5	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(2): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-7706C>A c.-162-7706C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124013661
chrX:124013722	CAA CAA	C C	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-162-7644_-162-764 others(6): Show c.-162-7644_-162-7643delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124013722
chrX:124014159	A A	T T	262	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(259): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	262	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(259): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-7208A>T c.-162-7208A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014159
chrX:124014319	C C	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-7048C>A c.-162-7048C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014319
chrX:124014367	A A	AT AT	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002 a0001c0001t0006g0009	5	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(2): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-162-6987dupT c.-162-6987dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124014367
chrX:124014367	AT AT	A A	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-162-6987delT c.-162-6987delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124014367
chrX:124014424	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-6943G>A c.-162-6943G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014424
chrX:124014442	C C	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-6925C>T c.-162-6925C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014442
chrX:124014677	T T	G G	1	a0001c0001t0001g0238 a0001c0001t0001g0238	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-162-6690T>G c.-162-6690T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014677
chrX:124014876	T T	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-162-6491T>C c.-162-6491T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014876
chrX:124014934	A A	G G	1	a0001c0003t0001g0078 a0001c0003t0001g0078	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.-162-6433A>G c.-162-6433A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014934
chrX:124014979	C C	CT CT	173	a0001c0001t0001g0006 a0001c0001t0001g0052 a0001c0001t0001g0053 others(170): Show a0001c0001t0001g0006 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0001t0002g0028 a0001c0001t0002g0042 a0001c0001t0002g0050 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0019 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0003t0001g0008 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	173	HG00558.hp2 HG00597.hp1 HG00621.hp1 others(170): Show HG00558.hp2 HG00597.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02886.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-6363dupT c.-162-6363dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124014979
chrX:124014979	C C	CTT CTT	26	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0007 others(23): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0079 a0001c0001t0001g0089 a0001c0001t0001g0103 a0001c0001t0001g0115 a0001c0001t0001g0131 a0001c0001t0001g0145 a0001c0001t0001g0154 a0001c0001t0001g0162 a0001c0001t0001g0169 a0001c0001t0001g0180 a0001c0001t0001g0189 a0001c0001t0001g0207 a0001c0001t0001g0215 a0001c0001t0001g0221 a0001c0001t0001g0230 a0001c0001t0001g0233 a0001c0001t0001g0252 a0001c0001t0001g0264 a0001c0001t0001g0275 a0001c0001t0002g0020 a0001c0001t0002g0193 a0001c0001t0009g0139 a0001c0003t0001g0078	26	HG00438.hp2 HG00597.hp2 HG00673.hp1 others(23): Show HG00438.hp2 HG00597.hp2 HG00673.hp1 HG00738.hp1 HG01069.hp1 HG01106.hp1 HG01175.hp1 HG01934.hp1 HG02027.hp1 HG02083.hp1 HG02258.hp1 HG02486.hp1 HG02818.hp1 HG02886.hp1 HG02896.hp2 HG03654.hp1 HG03831.hp1 HG03831.hp2 HG04228.hp1 NA18947.hp2 NA18950.hp1 NA18959.hp1 NA18966.hp1 NA18991.hp2 NA19011.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-162-6364_-162-636 others(6): Show c.-162-6364_-162-6363dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124014979
chrX:124014979	C C	CTTT CTTT	8	a0001c0001t0001g0088 a0001c0001t0001g0100 a0001c0001t0001g0166 others(5): Show a0001c0001t0001g0088 a0001c0001t0001g0100 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	8	HG01952.hp1 HG02148.hp1 HG02280.hp2 others(5): Show HG01952.hp1 HG02148.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02897.hp1 NA18522.hp1 NA19087.hp1	intron_variant	MODIFIER	c.-162-6365_-162-636 others(7): Show c.-162-6365_-162-6363dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124014979
chrX:124014979	CT CT	C C	2	a0001c0001t0001g0012 a0001c0001t0002g0047 a0001c0001t0001g0012 a0001c0001t0002g0047	2	HG01515.hp1 HG02630.hp1 HG01515.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-162-6363delT c.-162-6363delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124014979
chrX:124014987	T T	C C	3	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016	3	HG02451.hp1 HG02622.hp1 HG03540.hp1 HG02451.hp1 HG02622.hp1 HG03540.hp1	intron_variant	MODIFIER	c.-162-6380T>C c.-162-6380T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014987
chrX:124014988	T T	TC TC	1	a0001c0001t0001g0266 a0001c0001t0001g0266	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-162-6379_-162-637 others(5): Show c.-162-6379_-162-6378insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124014988
chrX:124015009	C C	T T	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-162-6358C>T c.-162-6358C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015009
chrX:124015073	A A	G G	261	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(258): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	261	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(258): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-6294A>G c.-162-6294A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015073
chrX:124015207	C C	T T	1	a0001c0001t0001g0183 a0001c0001t0001g0183	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-162-6160C>T c.-162-6160C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015207
chrX:124015233	G G	A A	2	a0001c0001t0001g0250 a0001c0001t0001g0270 a0001c0001t0001g0250 a0001c0001t0001g0270	2	NA19064.hp1 NA19077.hp2 NA19064.hp1 NA19077.hp2	intron_variant	MODIFIER	c.-162-6134G>A c.-162-6134G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015233
chrX:124015388	C C	CT CT	3	a0001c0001t0001g0067 a0001c0001t0001g0103 a0001c0001t0001g0149 a0001c0001t0001g0067 a0001c0001t0001g0103 a0001c0001t0001g0149	3	HG01243.hp1 HG04184.hp2 HG04228.hp1 HG01243.hp1 HG04184.hp2 HG04228.hp1	intron_variant	MODIFIER	c.-162-5965dupT c.-162-5965dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124015388
chrX:124015388	CT CT	C C	6	a0001c0001t0001g0081 a0001c0001t0001g0194 a0001c0001t0001g0199 others(3): Show a0001c0001t0001g0081 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0206 a0001c0001t0001g0267 a0001c0001t0002g0045	6	HG01884.hp1 HG02559.hp1 HG02922.hp2 others(3): Show HG01884.hp1 HG02559.hp1 HG02922.hp2 NA19081.hp1 NA19081.hp2 NA19083.hp1	intron_variant	MODIFIER	c.-162-5965delT c.-162-5965delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124015388
chrX:124015477	C C	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.-162-5890C>T c.-162-5890C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015477
chrX:124015669	G G	T T	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-5698G>T c.-162-5698G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015669
chrX:124015758	T T	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-5609T>C c.-162-5609T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015758
chrX:124015956	T T	A A	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-162-5411T>A c.-162-5411T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124015956
chrX:124016143	G G	GT GT	2	a0001c0001t0001g0171 a0001c0001t0002g0042 a0001c0001t0001g0171 a0001c0001t0002g0042	2	HG02280.hp2 HG03942.hp1 HG02280.hp2 HG03942.hp1	intron_variant	MODIFIER	c.-162-5214dupT c.-162-5214dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124016143
chrX:124016308	A A	G G	2	a0001c0001t0002g0040 a0001c0001t0002g0057 a0001c0001t0002g0040 a0001c0001t0002g0057	2	HG02080.hp2 HG02132.hp1 HG02080.hp2 HG02132.hp1	intron_variant	MODIFIER	c.-162-5059A>G c.-162-5059A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124016308
chrX:124016370	A A	G G	1	a0001c0001t0001g0196 a0001c0001t0001g0196	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.-162-4997A>G c.-162-4997A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124016370
chrX:124016398	T T	TA TA	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-4963dupA c.-162-4963dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124016398
chrX:124016426	T T	A A	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.-162-4941T>A c.-162-4941T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124016426
chrX:124016932	A A	G G	1	a0001c0001t0001g0265 a0001c0001t0001g0265	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.-162-4435A>G c.-162-4435A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124016932
chrX:124017001	T T	C C	4	a0001c0001t0001g0243 a0001c0002t0001g0063 a0001c0002t0001g0064 others(1): Show a0001c0001t0001g0243 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	4	HG01496.hp1 HG03195.hp2 HG03225.hp1 others(1): Show HG01496.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-162-4366T>C c.-162-4366T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124017001
chrX:124017095	C C	G G	2	a0001c0001t0001g0230 a0001c0001t0001g0235 a0001c0001t0001g0230 a0001c0001t0001g0235	2	HG03654.hp1 HG04184.hp1 HG03654.hp1 HG04184.hp1	intron_variant	MODIFIER	c.-162-4272C>G c.-162-4272C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124017095
chrX:124017213	C C	CT CT	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-162-4143dupT c.-162-4143dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124017213
chrX:124017279	G G	A A	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-162-4088G>A c.-162-4088G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124017279
chrX:124017550	GA GA	G G	5	a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 others(2): Show a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0251 a0001c0001t0001g0263	5	NA18981.hp2 NA18988.hp1 NA18989.hp1 others(2): Show NA18981.hp2 NA18988.hp1 NA18989.hp1 NA19011.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-162-3810delA c.-162-3810delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124017550
chrX:124017569	C C	A A	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-162-3798C>A c.-162-3798C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124017569
chrX:124018003	T T	C C	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.-162-3364T>C c.-162-3364T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018003
chrX:124018057	G G	C C	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.-162-3310G>C c.-162-3310G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018057
chrX:124018433	T T	G G	2	a0001c0001t0002g0036 a0001c0001t0002g0047 a0001c0001t0002g0036 a0001c0001t0002g0047	2	HG01515.hp1 HG01517.hp2 HG01515.hp1 HG01517.hp2	intron_variant	MODIFIER	c.-162-2934T>G c.-162-2934T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018433
chrX:124018446	T T	TTGGA TTGGA	6	a0001c0001t0001g0243 a0001c0001t0002g0032 a0001c0001t0002g0033 others(3): Show a0001c0001t0001g0243 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0002t0001g0069	6	HG00438.hp1 HG00558.hp1 HG01496.hp1 others(3): Show HG00438.hp1 HG00558.hp1 HG01496.hp1 HG03195.hp2 NA18952.hp1 NA18983.hp1	intron_variant	MODIFIER	c.-162-2884_-162-288 others(8): Show c.-162-2884_-162-2881dupTGGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124018446
chrX:124018446	T T	TTGGATGG others(1): Show TTGGATGGA	2	a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0063 a0001c0002t0001g0064	2	HG03225.hp1 NA18906.hp1 HG03225.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-162-2888_-162-288 others(12): Show c.-162-2888_-162-2881dupTGGATGGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124018446
chrX:124018446	TTGGA TTGGA	T T	206	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(203): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	206	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(203): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp2 HG03491.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-2884_-162-288 others(8): Show c.-162-2884_-162-2881delTGGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124018446
chrX:124018446	TTGGATGG others(1): Show TTGGATGGA	T T	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002 a0001c0001t0002g0151	5	HG01891.hp1 HG02258.hp1 HG02723.hp1 others(2): Show HG01891.hp1 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-2888_-162-288 others(12): Show c.-162-2888_-162-2881delTGGATGGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124018446
chrX:124018446	TTGGATGG others(5): Show TTGGATGGATGGA	T T	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-162-2892_-162-288 others(16): Show c.-162-2892_-162-2881delTGGATGGATGGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124018446
chrX:124018478	ATGG ATGG	A A	1	a0001c0001t0001g0110 a0001c0001t0001g0110	1	NA19079.hp1 NA19079.hp1	intron_variant	MODIFIER	c.-162-2888_-162-288 others(7): Show c.-162-2888_-162-2886delTGG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018478
chrX:124018483	T T	C C	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.-162-2884T>C c.-162-2884T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018483
chrX:124018484	G G	A A	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.-162-2883G>A c.-162-2883G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018484
chrX:124018488	A A	G G	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.-162-2879A>G c.-162-2879A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018488
chrX:124018494	A A	G G	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-162-2873A>G c.-162-2873A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018494
chrX:124018495	C C	T T	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.-162-2872C>T c.-162-2872C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018495
chrX:124018581	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-162-2786G>A c.-162-2786G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018581
chrX:124018637	T T	C C	1	a0001c0001t0001g0112 a0001c0001t0001g0112	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.-162-2730T>C c.-162-2730T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124018637
chrX:124018872	AT AT	A A	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-162-2493delT c.-162-2493delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124018872
chrX:124019052	C C	CT CT	90	a0001c0001t0001g0005 a0001c0001t0001g0013 a0001c0001t0001g0014 others(87): Show a0001c0001t0001g0005 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0077 a0001c0001t0001g0084 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0140 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0272 a0001c0001t0002g0002 a0001c0001t0002g0070 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0003c0006t0001g0226	90	HG00438.hp2 HG00558.hp1 HG00621.hp1 others(87): Show HG00438.hp2 HG00558.hp1 HG00621.hp1 HG00639.hp2 HG01074.hp1 HG01081.hp1 HG01099.hp1 HG01123.hp1 HG01175.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02145.hp1 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG03017.hp1 HG03098.hp1 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04199.hp1 HG04204.hp1 NA18906.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA18970.hp1 NA18974.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19004.hp1 NA19006.hp1 NA19011.hp1 NA19043.hp1 NA19058.hp1 NA19060.hp1 NA19065.hp1 NA19080.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-162-2293dupT c.-162-2293dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124019052
chrX:124019052	C C	CTT CTT	6	a0001c0001t0001g0199 a0001c0001t0001g0214 a0001c0001t0001g0235 others(3): Show a0001c0001t0001g0199 a0001c0001t0001g0214 a0001c0001t0001g0235 a0001c0001t0001g0239 a0001c0001t0001g0260 a0002c0004t0001g0255	6	HG02559.hp1 HG04184.hp1 NA18964.hp2 others(3): Show HG02559.hp1 HG04184.hp1 NA18964.hp2 NA18969.hp2 NA19003.hp1 NA19005.hp1	intron_variant	MODIFIER	c.-162-2294_-162-229 others(6): Show c.-162-2294_-162-2293dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124019052
chrX:124019052	C C	CTTT CTTT	1	a0001c0001t0001g0167 a0001c0001t0001g0167	1	HG02897.hp1 HG02897.hp1	intron_variant	MODIFIER	c.-162-2295_-162-229 others(7): Show c.-162-2295_-162-2293dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124019052
chrX:124019052	C C	CTTTT CTTTT	6	a0001c0001t0001g0166 a0001c0001t0001g0168 a0001c0001t0001g0169 others(3): Show a0001c0001t0001g0166 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	6	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(3): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 NA18522.hp1	intron_variant	MODIFIER	c.-162-2296_-162-229 others(8): Show c.-162-2296_-162-2293dupTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124019052
chrX:124019052	CT CT	C C	5	a0001c0001t0001g0111 a0001c0001t0001g0179 a0001c0001t0002g0020 others(2): Show a0001c0001t0001g0111 a0001c0001t0001g0179 a0001c0001t0002g0020 a0001c0001t0002g0041 a0001c0001t0004g0174	5	HG01257.hp2 HG02165.hp2 HG02976.hp2 others(2): Show HG01257.hp2 HG02165.hp2 HG02976.hp2 HG03831.hp2 NA18984.hp1	intron_variant	MODIFIER	c.-162-2293delT c.-162-2293delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124019052
chrX:124019149	C C	T T	1	a0001c0001t0001g0068 a0001c0001t0001g0068	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-162-2218C>T c.-162-2218C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124019149
chrX:124019540	A A	G G	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-162-1827A>G c.-162-1827A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124019540
chrX:124019642	A A	G G	1	a0001c0001t0001g0253 a0001c0001t0001g0253	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-162-1725A>G c.-162-1725A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124019642
chrX:124019913	G G	A A	1	a0001c0001t0002g0042 a0001c0001t0002g0042	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.-162-1454G>A c.-162-1454G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124019913
chrX:124019947	A A	G G	1	a0001c0001t0001g0188 a0001c0001t0001g0188	1	HG02723.hp1 HG02723.hp1	intron_variant	MODIFIER	c.-162-1420A>G c.-162-1420A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124019947
chrX:124020209	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.-162-1158G>A c.-162-1158G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020209
chrX:124020256	C C	T T	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA18999.hp2 NA18999.hp2	intron_variant	MODIFIER	c.-162-1111C>T c.-162-1111C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020256
chrX:124020395	C C	A A	2	a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0147 a0001c0001t0001g0162	2	HG02451.hp2 HG02818.hp1 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.-162-972C>A c.-162-972C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020395
chrX:124020395	C C	G G	104	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 others(101): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0003g0106 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	104	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(101): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-972C>G c.-162-972C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020395
chrX:124020458	G G	A A	106	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 others(103): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0003g0106 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	106	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(103): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-162-909G>A c.-162-909G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020458
chrX:124020780	G G	T T	2	a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0002g0222 a0001c0001t0002g0271	2	HG02683.hp1 HG02738.hp1 HG02683.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-162-587G>T c.-162-587G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020780
chrX:124020829	A A	T T	1	a0001c0001t0001g0089 a0001c0001t0001g0089	1	HG00597.hp2 HG00597.hp2	intron_variant	MODIFIER	c.-162-538A>T c.-162-538A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34		chrX	124020829
chrX:124021182	TATTA TATTA	T T	5	a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0265 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267	5	HG02071.hp1 NA18991.hp2 NA19058.hp1 others(2): Show HG02071.hp1 NA18991.hp2 NA19058.hp1 NA19081.hp1 NA19081.hp2	intron_variant	MODIFIER	c.-162-179_-162-176d others(6): Show c.-162-179_-162-176delTTAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124021182
chrX:124021295	G G	GT GT	1	a0001c0001t0001g0270 a0001c0001t0001g0270	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.-162-69dupT c.-162-69dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	1/34	INFO_REALIGN_3_PRIME	chrX	124021295
chrX:124021682	AT AT	A A	1	a0001c0001t0001g0270 a0001c0001t0001g0270	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.-98+257delT c.-98+257delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34	INFO_REALIGN_3_PRIME	chrX	124021682
chrX:124021705	A A	G G	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-98+274A>G c.-98+274A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34		chrX	124021705
chrX:124021776	C C	T T	8	a0001c0001t0001g0082 a0001c0001t0001g0100 a0001c0001t0001g0129 others(5): Show a0001c0001t0001g0082 a0001c0001t0001g0100 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0146 a0001c0001t0001g0150 a0001c0001t0001g0181 a0001c0001t0001g0261	8	HG00738.hp1 HG01993.hp2 HG02040.hp1 others(5): Show HG00738.hp1 HG01993.hp2 HG02040.hp1 HG02074.hp1 HG02148.hp1 NA18612.hp1 NA18991.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-98+345C>T c.-98+345C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34		chrX	124021776
chrX:124021807	G G	GT GT	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.-98+384dupT c.-98+384dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34	INFO_REALIGN_3_PRIME	chrX	124021807
chrX:124021818	T T	C C	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-98+387T>C c.-98+387T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34		chrX	124021818
chrX:124022136	C C	T T	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-97-395C>T c.-97-395C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34		chrX	124022136
chrX:124022305	AG AG	A A	1	a0001c0001t0001g0270 a0001c0001t0001g0270	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.-97-224delG c.-97-224delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34	INFO_REALIGN_3_PRIME	chrX	124022305
chrX:124022370	CA CA	C C	252	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(249): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	252	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(249): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-97-145delA c.-97-145delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34	INFO_REALIGN_3_PRIME	chrX	124022370
chrX:124022370	CAA CAA	C C	4	a0001c0001t0001g0118 a0001c0001t0001g0273 a0001c0001t0002g0031 others(1): Show a0001c0001t0001g0118 a0001c0001t0001g0273 a0001c0001t0002g0031 a0001c0001t0002g0198	4	HG01993.hp1 HG03540.hp2 NA18975.hp1 others(1): Show HG01993.hp1 HG03540.hp2 NA18975.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-97-146_-97-145del others(2): Show c.-97-146_-97-145delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34	INFO_REALIGN_3_PRIME	chrX	124022370
chrX:124022382	AAAAAG AAAAAG	A A	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.-97-145_-97-141del others(5): Show c.-97-145_-97-141delAGAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34	INFO_REALIGN_3_PRIME	chrX	124022382
chrX:124022467	A A	G G	6	a0001c0001t0001g0074 a0001c0001t0001g0086 a0001c0001t0001g0090 others(3): Show a0001c0001t0001g0074 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0125 a0001c0001t0001g0138 a0001c0001t0001g0160	6	HG01167.hp1 HG02257.hp1 HG02615.hp1 others(3): Show HG01167.hp1 HG02257.hp1 HG02615.hp1 HG02622.hp2 HG02965.hp1 HG03486.hp2	intron_variant	MODIFIER	c.-97-64A>G c.-97-64A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	2/34		chrX	124022467
chrX:124022770	C C	G G	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	NA18957.hp1 NA18957.hp1	intron_variant	MODIFIER	c.44+99C>G c.44+99C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124022770
chrX:124022967	G G	A A	2	a0001c0001t0001g0143 a0001c0001t0001g0254 a0001c0001t0001g0143 a0001c0001t0001g0254	2	HG02109.hp2 HG03130.hp1 HG02109.hp2 HG03130.hp1	intron_variant	MODIFIER	c.44+296G>A c.44+296G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124022967
chrX:124023124	A A	T T	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.44+453A>T c.44+453A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023124
chrX:124023252	G G	A A	42	a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 others(39): Show a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	42	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(39): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.44+581G>A c.44+581G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023252
chrX:124023304	C C	T T	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.44+633C>T c.44+633C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023304
chrX:124023319	G G	C C	4	a0001c0001t0001g0100 a0001c0001t0001g0129 a0001c0001t0001g0131 others(1): Show a0001c0001t0001g0100 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0146	4	HG00738.hp1 HG02040.hp1 HG02148.hp1 others(1): Show HG00738.hp1 HG02040.hp1 HG02148.hp1 NA18991.hp1	intron_variant	MODIFIER	c.44+648G>C c.44+648G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023319
chrX:124023424	CATTT CATTT	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.44+755_44+758delTT others(2): Show c.44+755_44+758delTTTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34	INFO_REALIGN_3_PRIME	chrX	124023424
chrX:124023841	G G	A A	2	a0001c0001t0001g0201 a0001c0001t0001g0213 a0001c0001t0001g0201 a0001c0001t0001g0213	2	HG02165.hp1 NA19004.hp1 HG02165.hp1 NA19004.hp1	intron_variant	MODIFIER	c.44+1170G>A c.44+1170G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023841
chrX:124023855	A A	G G	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.44+1184A>G c.44+1184A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023855
chrX:124023866	A A	G G	1	a0001c0001t0001g0239 a0001c0001t0001g0239	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.44+1195A>G c.44+1195A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023866
chrX:124023872	C C	T T	2	a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0003t0001g0008 a0001c0003t0001g0078	2	HG02886.hp1 HG03471.hp1 HG02886.hp1 HG03471.hp1	intron_variant	MODIFIER	c.44+1201C>T c.44+1201C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124023872
chrX:124024164	A A	G G	1	a0001c0001t0001g0272 a0001c0001t0001g0272	1	HG01517.hp1 HG01517.hp1	intron_variant	MODIFIER	c.44+1493A>G c.44+1493A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124024164
chrX:124024324	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.45-1516G>A c.45-1516G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124024324
chrX:124024374	A A	AT AT	1	a0001c0001t0001g0254 a0001c0001t0001g0254	1	HG02109.hp2 HG02109.hp2	intron_variant	MODIFIER	c.45-1456dupT c.45-1456dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34	INFO_REALIGN_3_PRIME	chrX	124024374
chrX:124024374	AT AT	A A	1	a0001c0003t0001g0078 a0001c0003t0001g0078	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.45-1456delT c.45-1456delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34	INFO_REALIGN_3_PRIME	chrX	124024374
chrX:124024915	GC GC	G G	1	a0001c0001t0001g0227 a0001c0001t0001g0227	1	NA18954.hp2 NA18954.hp2	intron_variant	MODIFIER	c.45-923delC c.45-923delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34	INFO_REALIGN_3_PRIME	chrX	124024915
chrX:124025029	T T	A A	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.45-811T>A c.45-811T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025029
chrX:124025130	T T	C C	53	a0001c0001t0001g0005 a0001c0001t0001g0105 a0001c0001t0001g0183 others(50): Show a0001c0001t0001g0005 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0002c0004t0001g0255 a0003c0006t0001g0226	53	HG00438.hp2 HG01123.hp1 HG01175.hp1 others(50): Show HG00438.hp2 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02071.hp1 HG02080.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1	intron_variant	MODIFIER	c.45-710T>C c.45-710T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025130
chrX:124025187	T T	A A	1	a0001c0001t0001g0102 a0001c0001t0001g0102	1	HG01361.hp2 HG01361.hp2	intron_variant	MODIFIER	c.45-653T>A c.45-653T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025187
chrX:124025461	T T	C C	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.45-379T>C c.45-379T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025461
chrX:124025522	G G	C C	262	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(259): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	262	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(259): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.45-318G>C c.45-318G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025522
chrX:124025624	T T	C C	62	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(59): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	62	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(59): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02818.hp2 HG02896.hp1 HG02976.hp2 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.45-216T>C c.45-216T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025624
chrX:124025683	A A	G G	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.45-157A>G c.45-157A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025683
chrX:124025829	T T	C C	1	a0001c0001t0001g0172 a0001c0001t0001g0172	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.45-11T>C c.45-11T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	3/34		chrX	124025829
chrX:124025960	TCACA TCACA	T T	1	a0001c0001t0010g0164 a0001c0001t0010g0164	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.123+51_123+54delCA others(2): Show c.123+51_123+54delCACA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124025960
chrX:124026000	A A	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.123+82A>C c.123+82A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026000
chrX:124026128	A A	AAAT AAAT	93	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0015 others(90): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0067 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0092 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0180 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0189 a0001c0001t0001g0225 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0023 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0041 a0001c0001t0002g0047 a0001c0001t0002g0060 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0185 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0008g0001 a0004c0005t0007g0083	93	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(90): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01099.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01346.hp1 HG01358.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG02015.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02602.hp1 HG02647.hp1 HG02683.hp2 HG02735.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03130.hp1 HG03486.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG04115.hp1 NA18522.hp1 NA18747.hp1 NA18941.hp2 NA18944.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18959.hp1 NA18960.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp1 NA18994.hp1 NA18999.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19062.hp1 NA19066.hp1 NA19067.hp1 NA19080.hp1 NA19081.hp1 NA19087.hp1 NA19088.hp1 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.123+251_123+253dup others(3): Show c.123+251_123+253dupATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	A A	AAATAAT AAATAAT	49	a0001c0001t0001g0014 a0001c0001t0001g0043 a0001c0001t0001g0056 others(46): Show a0001c0001t0001g0014 a0001c0001t0001g0043 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0073 a0001c0001t0001g0082 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0117 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0154 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0188 a0001c0001t0001g0190 a0001c0001t0001g0243 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0002g0002 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0024 a0001c0001t0002g0039 a0001c0001t0002g0042 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0259 a0001c0001t0009g0139 a0001c0002t0001g0069 a0001c0007t0001g0165	49	HG00735.hp1 HG01069.hp1 HG01081.hp2 others(46): Show HG00735.hp1 HG01069.hp1 HG01081.hp2 HG01109.hp1 HG01192.hp1 HG01361.hp2 HG01496.hp1 HG01517.hp1 HG01884.hp2 HG01891.hp2 HG01993.hp2 HG02027.hp1 HG02074.hp1 HG02109.hp1 HG02257.hp1 HG02257.hp2 HG02451.hp2 HG02622.hp1 HG02723.hp1 HG02809.hp2 HG02896.hp1 HG03195.hp2 HG03239.hp2 HG03490.hp1 HG03831.hp2 HG03942.hp1 HG04184.hp2 NA18612.hp1 NA18940.hp1 NA18947.hp2 NA18967.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18984.hp1 NA18990.hp1 NA18991.hp1 NA18995.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19065.hp2 NA19070.hp1 NA19077.hp1 NA19079.hp1 NA19083.hp1 NA19085.hp1 NA19090.hp1 NA20300.hp2	intron_variant	MODIFIER	c.123+248_123+253dup others(6): Show c.123+248_123+253dupATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	A A	AAATAATA others(2): Show AAATAATAAT	19	a0001c0001t0001g0013 a0001c0001t0001g0068 a0001c0001t0001g0071 others(16): Show a0001c0001t0001g0013 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0095 a0001c0001t0001g0103 a0001c0001t0001g0125 a0001c0001t0001g0129 a0001c0001t0001g0148 a0001c0001t0002g0040 a0001c0001t0002g0044 a0001c0001t0002g0049 a0001c0001t0002g0057 a0001c0001t0004g0003 a0001c0001t0007g0141 a0001c0002t0001g0063	19	HG01167.hp1 HG02040.hp1 HG02056.hp1 others(16): Show HG01167.hp1 HG02040.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02615.hp1 HG02630.hp2 HG02965.hp1 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03209.hp1 HG03486.hp2 HG04228.hp1 NA18906.hp1 NA18957.hp1 NA19068.hp1 NA19082.hp1 NA21309.hp1	intron_variant	MODIFIER	c.123+245_123+253dup others(9): Show c.123+245_123+253dupATAATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	A A	AAATAATA others(5): Show AAATAATAATAAT	5	a0001c0001t0001g0017 a0001c0001t0001g0118 a0001c0001t0001g0138 others(2): Show a0001c0001t0001g0017 a0001c0001t0001g0118 a0001c0001t0001g0138 a0001c0001t0002g0033 a0001c0002t0001g0064	5	HG02622.hp2 HG03225.hp1 HG03540.hp2 others(2): Show HG02622.hp2 HG03225.hp1 HG03540.hp2 NA18952.hp1 NA20129.hp2	intron_variant	MODIFIER	c.123+242_123+253dup others(12): Show c.123+242_123+253dupATAATAATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	A A	AAATAATA others(11): Show AAATAATAATAATAATAAT	1	a0001c0001t0003g0106 a0001c0001t0003g0106	1	NA19240.hp2 NA19240.hp2	intron_variant	MODIFIER	c.123+236_123+253dup others(18): Show c.123+236_123+253dupATAATAATAATAATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	A A	AT AT	1	a0001c0001t0001g0241 a0001c0001t0001g0241	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.123+210_123+211ins others(1): Show c.123+210_123+211insT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026128
chrX:124026128	AAAT AAAT	A A	4	a0001c0001t0001g0012 a0001c0001t0002g0029 a0001c0001t0004g0174 others(1): Show a0001c0001t0001g0012 a0001c0001t0002g0029 a0001c0001t0004g0174 a0001c0001t0004g0175	4	HG02630.hp1 HG02818.hp2 HG02976.hp2 others(1): Show HG02630.hp1 HG02818.hp2 HG02976.hp2 HG03669.hp2	intron_variant	MODIFIER	c.123+251_123+253del others(3): Show c.123+251_123+253delATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	AAATAAT AAATAAT	A A	13	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0053 others(10): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0053 a0001c0001t0001g0202 a0001c0001t0001g0221 a0001c0001t0001g0234 a0001c0001t0001g0252 a0001c0001t0001g0257 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0003c0006t0001g0226	13	HG01106.hp1 HG02071.hp1 HG02559.hp2 others(10): Show HG01106.hp1 HG02071.hp1 HG02559.hp2 HG03017.hp1 HG03831.hp1 HG04204.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA19058.hp1 NA19063.hp1 NA19081.hp2 NA19091.hp1	intron_variant	MODIFIER	c.123+248_123+253del others(6): Show c.123+248_123+253delATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	AAATAATA others(2): Show AAATAATAAT	A A	72	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0105 others(69): Show a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0264 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0001c0003t0001g0078 a0002c0004t0001g0255	72	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(69): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03579.hp1 HG03654.hp1 HG04184.hp1 HG04199.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19060.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19086.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.123+245_123+253del others(9): Show c.123+245_123+253delATAATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	AAATAATA others(5): Show AAATAATAATAAT	A A	1	a0001c0001t0001g0161 a0001c0001t0001g0161	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.123+242_123+253del others(12): Show c.123+242_123+253delATAATAATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026128	AAATAATA others(8): Show AAATAATAATAATAAT	A A	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.123+239_123+253del others(15): Show c.123+239_123+253delATAATAATAATAATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026128
chrX:124026154	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.123+236A>G c.123+236A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026154
chrX:124026165	A A	T T	1	a0001c0001t0001g0266 a0001c0001t0001g0266	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.123+247A>T c.123+247A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026165
chrX:124026172	C C	A A	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.123+254C>A c.123+254C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026172
chrX:124026366	A A	G G	2	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0006 a0001c0001t0001g0007	2	HG00673.hp1 HG02015.hp1 HG00673.hp1 HG02015.hp1	intron_variant	MODIFIER	c.123+448A>G c.123+448A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026366
chrX:124026566	A A	AT AT	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.123+651dupT c.123+651dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026566
chrX:124026885	AT AT	A A	1	a0001c0001t0001g0220 a0001c0001t0001g0220	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.123+969delT c.123+969delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124026885
chrX:124026908	A A	G G	3	a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177	3	HG02109.hp1 HG02809.hp2 HG03540.hp2 HG02109.hp1 HG02809.hp2 HG03540.hp2	intron_variant	MODIFIER	c.123+990A>G c.123+990A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124026908
chrX:124027162	C C	T T	1	a0001c0001t0002g0193 a0001c0001t0002g0193	1	NA18950.hp1 NA18950.hp1	intron_variant	MODIFIER	c.123+1244C>T c.123+1244C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124027162
chrX:124027210	C C	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.123+1292C>T c.123+1292C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124027210
chrX:124027656	A A	G G	1	a0001c0001t0002g0002 a0001c0001t0002g0002	1	HG02896.hp1 HG02896.hp1	intron_variant	MODIFIER	c.123+1738A>G c.123+1738A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124027656
chrX:124027838	T T	G G	2	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0174 a0001c0001t0004g0175	2	HG02818.hp2 HG02976.hp2 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.123+1920T>G c.123+1920T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124027838
chrX:124027847	G G	GT GT	1	a0001c0001t0001g0133 a0001c0001t0001g0133	1	HG01109.hp1 HG01109.hp1	intron_variant	MODIFIER	c.123+1937dupT c.123+1937dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124027847
chrX:124027876	G G	C C	1	a0001c0001t0001g0257 a0001c0001t0001g0257	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.123+1958G>C c.123+1958G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124027876
chrX:124027882	G G	A A	1	a0001c0001t0001g0272 a0001c0001t0001g0272	1	HG01517.hp1 HG01517.hp1	intron_variant	MODIFIER	c.123+1964G>A c.123+1964G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124027882
chrX:124028083	G G	A A	1	a0001c0001t0001g0143 a0001c0001t0001g0143	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.123+2165G>A c.123+2165G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028083
chrX:124028578	C C	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-2383C>T c.124-2383C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028578
chrX:124028644	G G	A A	1	a0001c0001t0001g0117 a0001c0001t0001g0117	1	HG03239.hp2 HG03239.hp2	intron_variant	MODIFIER	c.124-2317G>A c.124-2317G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028644
chrX:124028670	C C	T T	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.124-2291C>T c.124-2291C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028670
chrX:124028794	T T	TTA TTA	2	a0001c0001t0001g0043 a0001c0001t0002g0018 a0001c0001t0001g0043 a0001c0001t0002g0018	2	HG02148.hp2 NA19090.hp1 HG02148.hp2 NA19090.hp1	intron_variant	MODIFIER	c.124-2139_124-2138d others(4): Show c.124-2139_124-2138dupAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028794
chrX:124028794	T T	TTATA TTATA	2	a0001c0001t0001g0066 a0001c0002t0001g0064 a0001c0001t0001g0066 a0001c0002t0001g0064	2	HG03225.hp1 NA19043.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.124-2141_124-2138d others(6): Show c.124-2141_124-2138dupATAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028794
chrX:124028794	T T	TTATATA TTATATA	3	a0001c0001t0001g0243 a0001c0002t0001g0063 a0001c0002t0001g0069 a0001c0001t0001g0243 a0001c0002t0001g0063 a0001c0002t0001g0069	3	HG01496.hp1 HG03195.hp2 NA18906.hp1 HG01496.hp1 HG03195.hp2 NA18906.hp1	intron_variant	MODIFIER	c.124-2143_124-2138d others(8): Show c.124-2143_124-2138dupATATAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028794
chrX:124028794	TTA TTA	T T	3	a0001c0001t0001g0098 a0001c0001t0001g0196 a0001c0001t0002g0259 a0001c0001t0001g0098 a0001c0001t0001g0196 a0001c0001t0002g0259	3	HG01358.hp1 HG03491.hp2 NA19064.hp2 HG01358.hp1 HG03491.hp2 NA19064.hp2	intron_variant	MODIFIER	c.124-2139_124-2138d others(4): Show c.124-2139_124-2138delAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028794
chrX:124028794	TTATA TTATA	T T	14	a0001c0001t0001g0128 a0001c0001t0001g0166 a0001c0001t0001g0167 others(11): Show a0001c0001t0001g0128 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0250 a0001c0001t0001g0264 a0001c0001t0001g0270 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	14	HG00438.hp2 HG01952.hp1 HG02280.hp1 others(11): Show HG00438.hp2 HG01952.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02896.hp2 HG02897.hp1 HG02976.hp2 NA18522.hp1 NA19064.hp1 NA19077.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.124-2141_124-2138d others(6): Show c.124-2141_124-2138delATAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028794
chrX:124028794	TTATATA TTATATA	T T	179	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(176): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	179	HG00558.hp2 HG00621.hp1 HG00639.hp1 others(176): Show HG00558.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.124-2143_124-2138d others(8): Show c.124-2143_124-2138delATATAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028794
chrX:124028812	ATATATAT others(7): Show ATATATATATATTTT	A A	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.124-2147_124-2134d others(16): Show c.124-2147_124-2134delATATATATATTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028812
chrX:124028813	TATA TATA	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-2147_124-2145d others(5): Show c.124-2147_124-2145delATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028813
chrX:124028815	TATATATA TATATATA	T T	2	a0001c0001t0001g0160 a0001c0001t0008g0001 a0001c0001t0001g0160 a0001c0001t0008g0001	2	HG02257.hp1 NA18965.hp1 HG02257.hp1 NA18965.hp1	intron_variant	MODIFIER	c.124-2145_124-2139d others(9): Show c.124-2145_124-2139delATATATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028815
chrX:124028816	ATATATAT others(1): Show ATATATATT	A A	2	a0001c0001t0001g0071 a0001c0001t0001g0188 a0001c0001t0001g0071 a0001c0001t0001g0188	2	HG02723.hp1 HG03209.hp1 HG02723.hp1 HG03209.hp1	intron_variant	MODIFIER	c.124-2143_124-2136d others(10): Show c.124-2143_124-2136delATATATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028816
chrX:124028818	A A	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-2143A>T c.124-2143A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028818
chrX:124028818	ATATAT ATATAT	A A	2	a0001c0001t0001g0089 a0001c0001t0001g0162 a0001c0001t0001g0089 a0001c0001t0001g0162	2	HG00597.hp2 HG02818.hp1 HG00597.hp2 HG02818.hp1	intron_variant	MODIFIER	c.124-2141_124-2137d others(7): Show c.124-2141_124-2137delATATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028818
chrX:124028818	ATATATT ATATATT	A A	3	a0001c0001t0001g0107 a0001c0001t0001g0127 a0001c0001t0001g0161 a0001c0001t0001g0107 a0001c0001t0001g0127 a0001c0001t0001g0161	3	HG01099.hp1 HG01433.hp1 NA20905.hp1 HG01099.hp1 HG01433.hp1 NA20905.hp1	intron_variant	MODIFIER	c.124-2141_124-2136d others(8): Show c.124-2141_124-2136delATATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028818
chrX:124028818	ATATATTT others(1): Show ATATATTTT	A A	6	a0001c0001t0001g0187 a0001c0001t0002g0002 a0001c0001t0002g0059 others(3): Show a0001c0001t0001g0187 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	6	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(3): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02896.hp1 HG03486.hp1 NA20805.hp1	intron_variant	MODIFIER	c.124-2141_124-2134d others(10): Show c.124-2141_124-2134delATATTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028818
chrX:124028820	A A	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-2141A>T c.124-2141A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028820
chrX:124028820	ATATT ATATT	A A	4	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(1): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016	4	HG02451.hp1 HG02622.hp1 HG02630.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03540.hp1	intron_variant	MODIFIER	c.124-2139_124-2136d others(6): Show c.124-2139_124-2136delATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028820
chrX:124028822	A A	ATATATAT others(3): Show ATATATATATT	4	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 others(1): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0004g0003	4	HG02630.hp2 HG02976.hp1 HG03098.hp1 others(1): Show HG02630.hp2 HG02976.hp1 HG03098.hp1 NA20300.hp2	intron_variant	MODIFIER	c.124-2138_124-2137i others(12): Show c.124-2138_124-2137insATATATATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028822
chrX:124028822	A A	ATATT ATATT	1	a0001c0001t0001g0178 a0001c0001t0001g0178	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.124-2138_124-2137i others(6): Show c.124-2138_124-2137insATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028822
chrX:124028822	A A	T T	25	a0001c0001t0001g0067 a0001c0001t0001g0094 a0001c0001t0001g0122 others(22): Show a0001c0001t0001g0067 a0001c0001t0001g0094 a0001c0001t0001g0122 a0001c0001t0001g0152 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0177 a0001c0001t0001g0191 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0204 a0001c0001t0001g0206 a0001c0001t0001g0219 a0001c0001t0001g0242 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0003t0001g0008 a0001c0003t0001g0078	25	HG00639.hp2 HG01081.hp1 HG01243.hp1 others(22): Show HG00639.hp2 HG01081.hp1 HG01243.hp1 HG01884.hp1 HG01952.hp1 HG02109.hp1 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02559.hp1 HG02647.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG02976.hp2 HG03471.hp1 NA18522.hp1 NA18968.hp2	intron_variant	MODIFIER	c.124-2139A>T c.124-2139A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028822
chrX:124028822	AT AT	A A	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.124-2128delT c.124-2128delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028822
chrX:124028822	ATT ATT	A A	29	a0001c0001t0001g0017 a0001c0001t0002g0011 a0001c0001t0002g0020 others(26): Show a0001c0001t0001g0017 a0001c0001t0002g0011 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0025 a0001c0001t0002g0030 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034	29	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(26): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG01257.hp2 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG03491.hp1 HG03492.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA20129.hp2	intron_variant	MODIFIER	c.124-2129_124-2128d others(4): Show c.124-2129_124-2128delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028822
chrX:124028823	T T	TATATA TATATA	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.124-2138_124-2137i others(7): Show c.124-2138_124-2137insATATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028823
chrX:124028823	T T	TATATATA others(2): Show TATATATATA	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.124-2138_124-2137i others(11): Show c.124-2138_124-2137insATATATATA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028823
chrX:124028824	T T	A A	13	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0066 others(10): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0066 a0001c0001t0001g0243 a0001c0001t0002g0021 a0001c0001t0002g0024 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0036 a0001c0001t0002g0047 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	13	HG01346.hp1 HG01515.hp1 HG01517.hp2 others(10): Show HG01346.hp1 HG01515.hp1 HG01517.hp2 HG02273.hp2 HG03195.hp2 HG03490.hp1 HG03669.hp2 HG03688.hp1 HG04115.hp1 NA18969.hp1 NA19043.hp1 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.124-2137T>A c.124-2137T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028824
chrX:124028825	T T	A A	2	a0001c0001t0001g0053 a0001c0001t0001g0190 a0001c0001t0001g0053 a0001c0001t0001g0190	2	HG02257.hp2 HG02559.hp2 HG02257.hp2 HG02559.hp2	intron_variant	MODIFIER	c.124-2136T>A c.124-2136T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028825
chrX:124028826	T T	A A	3	a0001c0001t0002g0028 a0001c0001t0002g0051 a0001c0001t0002g0070 a0001c0001t0002g0028 a0001c0001t0002g0051 a0001c0001t0002g0070	3	HG00558.hp1 HG04115.hp1 NA19000.hp1 HG00558.hp1 HG04115.hp1 NA19000.hp1	intron_variant	MODIFIER	c.124-2135T>A c.124-2135T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028826
chrX:124028934	G G	A A	43	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 others(40): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	43	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(40): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.124-2027G>A c.124-2027G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028934
chrX:124028981	T T	A A	2	a0001c0001t0001g0184 a0001c0001t0001g0224 a0001c0001t0001g0184 a0001c0001t0001g0224	2	NA18974.hp1 NA18999.hp1 NA18974.hp1 NA18999.hp1	intron_variant	MODIFIER	c.124-1980T>A c.124-1980T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028981
chrX:124028985	T T	TTA TTA	2	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0174 a0001c0001t0004g0175	2	HG02818.hp2 HG02976.hp2 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.124-1948_124-1947d others(4): Show c.124-1948_124-1947dupAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028985
chrX:124028985	TTA TTA	T T	83	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0105 others(80): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0146 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0002 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	83	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(80): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02258.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03486.hp1 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.124-1948_124-1947d others(4): Show c.124-1948_124-1947delAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028985
chrX:124028985	TTATA TTATA	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.124-1950_124-1947d others(6): Show c.124-1950_124-1947delATAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028985
chrX:124028987	A A	ATATT ATATT	1	a0001c0001t0001g0109 a0001c0001t0001g0109	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.124-1971_124-1970i others(6): Show c.124-1971_124-1970insTTAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028987
chrX:124028989	A A	ATT ATT	16	a0001c0001t0001g0004 a0001c0001t0001g0074 a0001c0001t0001g0081 others(13): Show a0001c0001t0001g0004 a0001c0001t0001g0074 a0001c0001t0001g0081 a0001c0001t0001g0089 a0001c0001t0001g0097 a0001c0001t0001g0101 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0157 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0225 a0001c0001t0001g0249 a0001c0001t0002g0025 a0004c0005t0007g0083	16	HG00597.hp2 HG01106.hp1 HG02135.hp1 others(13): Show HG00597.hp2 HG01106.hp1 HG02135.hp1 HG02615.hp1 HG03704.hp2 NA18941.hp1 NA18941.hp2 NA18964.hp1 NA18977.hp1 NA18994.hp1 NA19007.hp1 NA19009.hp1 NA19070.hp1 NA19080.hp1 NA19081.hp1 NA19088.hp1	intron_variant	MODIFIER	c.124-1971_124-1970i others(4): Show c.124-1971_124-1970insTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124028989
chrX:124028990	TA TA	T T	2	a0001c0001t0003g0106 a0001c0007t0001g0165 a0001c0001t0003g0106 a0001c0007t0001g0165	2	NA19065.hp2 NA19240.hp2 NA19065.hp2 NA19240.hp2	intron_variant	MODIFIER	c.124-1970delA c.124-1970delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028990
chrX:124028991	A A	T T	155	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 others(152): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0196 a0001c0001t0001g0233 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0003g0216 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0003t0001g0008 a0001c0003t0001g0078	155	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(152): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp2 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18960.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp1 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19064.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.124-1970A>T c.124-1970A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028991
chrX:124028993	A A	T T	83	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0105 others(80): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0105 a0001c0001t0001g0146 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0002 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	83	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(80): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02258.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03486.hp1 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.124-1968A>T c.124-1968A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028993
chrX:124028995	A A	G G	1	a0001c0001t0001g0240 a0001c0001t0001g0240	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.124-1966A>G c.124-1966A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028995
chrX:124028995	A A	T T	2	a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0189 a0001c0001t0001g0190	2	HG02257.hp2 HG02258.hp1 HG02257.hp2 HG02258.hp1	intron_variant	MODIFIER	c.124-1966A>T c.124-1966A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124028995
chrX:124029007	A A	ATT ATT	2	a0001c0001t0001g0066 a0001c0001t0001g0243 a0001c0001t0001g0066 a0001c0001t0001g0243	2	HG03195.hp2 NA19043.hp1 HG03195.hp2 NA19043.hp1	intron_variant	MODIFIER	c.124-1953_124-1952i others(4): Show c.124-1953_124-1952insTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029007
chrX:124029007	A A	T T	17	a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 others(14): Show a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0092 a0001c0001t0001g0109 a0001c0001t0001g0131 a0001c0001t0001g0178 a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	17	HG00738.hp1 HG01496.hp1 HG01884.hp2 others(14): Show HG00738.hp1 HG01496.hp1 HG01884.hp2 HG02273.hp1 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03225.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 NA18906.hp1 NA19085.hp1 NA20129.hp2 NA20300.hp2	intron_variant	MODIFIER	c.124-1954A>T c.124-1954A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029007
chrX:124029011	A A	AT AT	1	a0001c0001t0001g0241 a0001c0001t0001g0241	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.124-1949dupT c.124-1949dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029011
chrX:124029011	A A	ATATTTAT others(1): Show ATATTTATT	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-1936_124-1929d others(10): Show c.124-1936_124-1929dupATTTATTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029011
chrX:124029011	A A	ATT ATT	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.124-1949_124-1948i others(4): Show c.124-1949_124-1948insTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029011
chrX:124029011	A A	T T	252	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(249): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	252	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(249): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.124-1950A>T c.124-1950A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029011
chrX:124029117	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.124-1844C>T c.124-1844C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029117
chrX:124029207	T T	C C	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.124-1754T>C c.124-1754T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029207
chrX:124029398	C C	T T	8	a0001c0001t0001g0220 a0001c0001t0001g0227 a0001c0001t0001g0229 others(5): Show a0001c0001t0001g0220 a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0248 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0002g0193	8	NA18949.hp1 NA18950.hp1 NA18954.hp2 others(5): Show NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18961.hp1 NA18962.hp1 NA18968.hp1 NA19003.hp1 NA19086.hp1	intron_variant	MODIFIER	c.124-1563C>T c.124-1563C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029398
chrX:124029456	G G	T T	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.124-1505G>T c.124-1505G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029456
chrX:124029530	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.124-1431C>T c.124-1431C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029530
chrX:124029541	G G	A A	1	a0001c0001t0001g0121 a0001c0001t0001g0121	1	NA18950.hp2 NA18950.hp2	intron_variant	MODIFIER	c.124-1420G>A c.124-1420G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029541
chrX:124029787	AG AG	A A	1	a0001c0001t0001g0238 a0001c0001t0001g0238	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.124-1170delG c.124-1170delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029787
chrX:124029789	G G	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-1172G>C c.124-1172G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029789
chrX:124029795	G G	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.124-1166G>T c.124-1166G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124029795
chrX:124029870	GT GT	G G	1	a0001c0001t0001g0220 a0001c0001t0001g0220	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.124-1087delT c.124-1087delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029870
chrX:124029922	AG AG	A A	1	a0001c0001t0001g0220 a0001c0001t0001g0220	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.124-1036delG c.124-1036delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029922
chrX:124029939	AT AT	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.124-1015delT c.124-1015delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124029939
chrX:124030092	CCTA CCTA	C C	1	a0001c0001t0002g0021 a0001c0001t0002g0021	1	NA18969.hp1 NA18969.hp1	intron_variant	MODIFIER	c.124-866_124-864del others(3): Show c.124-866_124-864delACT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124030092
chrX:124030101	A A	G G	2	a0001c0001t0001g0080 a0001c0001t0001g0093 a0001c0001t0001g0080 a0001c0001t0001g0093	2	HG00642.hp1 HG01192.hp1 HG00642.hp1 HG01192.hp1	intron_variant	MODIFIER	c.124-860A>G c.124-860A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124030101
chrX:124030197	T T	C C	1	a0001c0001t0001g0154 a0001c0001t0001g0154	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.124-764T>C c.124-764T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124030197
chrX:124030338	GT GT	G G	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.124-618delT c.124-618delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34	INFO_REALIGN_3_PRIME	chrX	124030338
chrX:124030596	C C	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.124-365C>T c.124-365C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124030596
chrX:124030921	G G	T T	1	a0001c0001t0001g0160 a0001c0001t0001g0160	1	HG02257.hp1 HG02257.hp1	intron_variant	MODIFIER	c.124-40G>T c.124-40G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	4/34		chrX	124030921
chrX:124031368	A A	T T	1	a0001c0001t0001g0218 a0001c0001t0001g0218	1	NA18957.hp2 NA18957.hp2	intron_variant	MODIFIER	c.288+243A>T c.288+243A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031368
chrX:124031447	C C	A A	1	a0001c0001t0001g0130 a0001c0001t0001g0130	1	NA18981.hp1 NA18981.hp1	intron_variant	MODIFIER	c.288+322C>A c.288+322C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031447
chrX:124031528	G G	GT GT	1	a0001c0001t0001g0241 a0001c0001t0001g0241	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.288+409dupT c.288+409dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124031528
chrX:124031535	G G	T T	251	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 others(248): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	251	HG00140.hp1 HG00280.hp1 HG00438.hp2 others(248): Show HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.288+410G>T c.288+410G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031535
chrX:124031550	TG TG	T T	1	a0001c0001t0001g0257 a0001c0001t0001g0257	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.288+426delG c.288+426delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031550
chrX:124031551	G G	GT GT	38	a0001c0001t0001g0005 a0001c0001t0001g0054 a0001c0001t0001g0056 others(35): Show a0001c0001t0001g0005 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0082 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0134 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0150 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0228 a0001c0001t0001g0261 a0001c0001t0002g0136 a0001c0001t0007g0141 a0001c0001t0009g0139	38	HG00639.hp1 HG00735.hp1 HG00738.hp1 others(35): Show HG00639.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01256.hp1 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01943.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02148.hp1 HG02165.hp2 HG02683.hp2 HG03669.hp1 NA18612.hp1 NA18947.hp1 NA18947.hp2 NA18950.hp2 NA18954.hp1 NA18959.hp1 NA18967.hp1 NA18968.hp2 NA18981.hp1 NA18991.hp1 NA18991.hp2 NA18995.hp1 NA19003.hp2 NA19056.hp1 NA19068.hp1 NA19079.hp1 NA19087.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.288+434dupT c.288+434dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124031551
chrX:124031552	TTTTTTTT others(1): Show TTTTTTTTG	T T	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.288+451_288+458del others(8): Show c.288+451_288+458delGTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124031552
chrX:124031555	T T	G G	2	a0001c0001t0001g0162 a0001c0001t0001g0213 a0001c0001t0001g0162 a0001c0001t0001g0213	2	HG02818.hp1 NA19004.hp1 HG02818.hp1 NA19004.hp1	intron_variant	MODIFIER	c.288+430T>G c.288+430T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031555
chrX:124031577	T T	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.288+452T>G c.288+452T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031577
chrX:124031655	T T	C C	2	a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0063 a0001c0002t0001g0064	2	HG03225.hp1 NA18906.hp1 HG03225.hp1 NA18906.hp1	intron_variant	MODIFIER	c.288+530T>C c.288+530T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031655
chrX:124031741	A A	T T	2	a0001c0001t0002g0038 a0001c0001t0002g0042 a0001c0001t0002g0038 a0001c0001t0002g0042	2	HG03710.hp1 HG03942.hp1 HG03710.hp1 HG03942.hp1	intron_variant	MODIFIER	c.288+616A>T c.288+616A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031741
chrX:124031833	C C	T T	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.288+708C>T c.288+708C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031833
chrX:124031879	C C	T T	1	a0001c0001t0001g0150 a0001c0001t0001g0150	1	HG01993.hp2 HG01993.hp2	intron_variant	MODIFIER	c.288+754C>T c.288+754C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124031879
chrX:124032091	A A	G G	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.288+966A>G c.288+966A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032091
chrX:124032169	A A	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.288+1044A>G c.288+1044A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032169
chrX:124032217	G G	A A	1	a0001c0001t0001g0181 a0001c0001t0001g0181	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.288+1092G>A c.288+1092G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032217
chrX:124032436	A A	G G	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.288+1311A>G c.288+1311A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032436
chrX:124032465	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.288+1340A>G c.288+1340A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032465
chrX:124032468	C C	A A	59	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(56): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	59	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(56): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.288+1343C>A c.288+1343C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032468
chrX:124032775	T T	C C	1	a0001c0003t0001g0078 a0001c0003t0001g0078	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.288+1650T>C c.288+1650T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032775
chrX:124032905	A A	G G	2	a0001c0001t0001g0201 a0001c0001t0001g0213 a0001c0001t0001g0201 a0001c0001t0001g0213	2	HG02165.hp1 NA19004.hp1 HG02165.hp1 NA19004.hp1	intron_variant	MODIFIER	c.288+1780A>G c.288+1780A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032905
chrX:124032992	G G	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.288+1867G>T c.288+1867G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124032992
chrX:124033027	A A	G G	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02451.hp1 HG02451.hp1	intron_variant	MODIFIER	c.288+1902A>G c.288+1902A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124033027
chrX:124033186	CT CT	C C	1	a0001c0001t0001g0238 a0001c0001t0001g0238	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.288+2065delT c.288+2065delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124033186
chrX:124033541	C C	T T	1	a0001c0001t0001g0205 a0001c0001t0001g0205	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.288+2416C>T c.288+2416C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124033541
chrX:124033677	A A	C C	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.288+2552A>C c.288+2552A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124033677
chrX:124033703	A A	C C	1	a0001c0001t0001g0096 a0001c0001t0001g0096	1	NA18954.hp1 NA18954.hp1	intron_variant	MODIFIER	c.288+2578A>C c.288+2578A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124033703
chrX:124033767	A A	T T	1	a0001c0001t0001g0182 a0001c0001t0001g0182	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.288+2642A>T c.288+2642A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124033767
chrX:124033790	CAT CAT	C C	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.288+2667_288+2668d others(4): Show c.288+2667_288+2668delTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124033790
chrX:124033847	C C	T T	1	a0001c0001t0001g0111 a0001c0001t0001g0111	1	HG02165.hp2 HG02165.hp2	intron_variant	MODIFIER	c.288+2722C>T c.288+2722C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124033847
chrX:124033911	A A	AT AT	1	a0001c0001t0001g0111 a0001c0001t0001g0111	1	HG02165.hp2 HG02165.hp2	intron_variant	MODIFIER	c.288+2787dupT c.288+2787dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124033911
chrX:124034295	T T	C C	3	a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169	3	HG02647.hp1 HG02896.hp2 HG02897.hp1 HG02647.hp1 HG02896.hp2 HG02897.hp1	intron_variant	MODIFIER	c.288+3170T>C c.288+3170T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034295
chrX:124034400	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.289-3127C>T c.289-3127C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034400
chrX:124034643	C C	G G	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.289-2884C>G c.289-2884C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034643
chrX:124034649	A A	G G	50	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(47): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	50	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(47): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.289-2878A>G c.289-2878A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034649
chrX:124034823	A A	G G	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.289-2704A>G c.289-2704A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034823
chrX:124034856	AGTT AGTT	A A	3	a0001c0001t0001g0232 a0001c0001t0001g0238 a0001c0001t0002g0198 a0001c0001t0001g0232 a0001c0001t0001g0238 a0001c0001t0002g0198	3	NA18970.hp1 NA19006.hp1 NA19055.hp1 NA18970.hp1 NA19006.hp1 NA19055.hp1	intron_variant	MODIFIER	c.289-2649_289-2647d others(5): Show c.289-2649_289-2647delGTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124034856
chrX:124034868	T T	A A	1	a0001c0001t0001g0154 a0001c0001t0001g0154	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.289-2659T>A c.289-2659T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034868
chrX:124034875	G G	GTTA GTTA	24	a0001c0001t0001g0085 a0001c0001t0001g0099 a0001c0001t0001g0117 others(21): Show a0001c0001t0001g0085 a0001c0001t0001g0099 a0001c0001t0001g0117 a0001c0001t0001g0126 a0001c0001t0001g0146 a0001c0001t0001g0161 a0001c0001t0001g0170 a0001c0001t0001g0188 a0001c0001t0001g0192 a0001c0001t0001g0209 a0001c0001t0001g0215 a0001c0001t0001g0223 a0001c0001t0001g0231 a0001c0001t0001g0236 a0001c0001t0001g0241 a0001c0001t0001g0256 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0003t0001g0078	24	HG01081.hp2 HG01123.hp1 HG01123.hp2 others(21): Show HG01081.hp2 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01433.hp1 HG02129.hp1 HG02280.hp1 HG02602.hp1 HG02683.hp1 HG02723.hp1 HG02738.hp1 HG02818.hp2 HG02886.hp1 HG02976.hp2 HG03239.hp2 NA18977.hp1 NA18991.hp1 NA18999.hp2 NA19089.hp1 NA19240.hp1	intron_variant	MODIFIER	c.289-2650_289-2649i others(5): Show c.289-2650_289-2649insATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124034875
chrX:124034875	G G	GTTATTA GTTATTA	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.289-2650_289-2649i others(8): Show c.289-2650_289-2649insATTATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124034875
chrX:124034875	GTTGTTA GTTGTTA	G G	49	a0001c0001t0001g0043 a0001c0001t0001g0166 a0001c0001t0001g0167 others(46): Show a0001c0001t0001g0043 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01952.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18522.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.289-2649_289-2644d others(8): Show c.289-2649_289-2644delGTTATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124034875
chrX:124034878	G G	A A	206	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(203): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	206	HG00280.hp1 HG00438.hp2 HG00558.hp2 others(203): Show HG00280.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02280.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.289-2649G>A c.289-2649G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124034878
chrX:124034878	G G	GTTA GTTA	2	a0001c0001t0001g0178 a0001c0003t0001g0008 a0001c0001t0001g0178 a0001c0003t0001g0008	2	HG01884.hp2 HG03471.hp1 HG01884.hp2 HG03471.hp1	intron_variant	MODIFIER	c.289-2623_289-2621d others(5): Show c.289-2623_289-2621dupTAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124034878
chrX:124034904	T T	TATC TATC	1	a0001c0001t0001g0182 a0001c0001t0001g0182	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.289-2620_289-2618d others(5): Show c.289-2620_289-2618dupCAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124034904
chrX:124035053	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.289-2474C>T c.289-2474C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124035053
chrX:124035055	C C	T T	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.289-2472C>T c.289-2472C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124035055
chrX:124035091	G G	A A	1	a0001c0001t0002g0062 a0001c0001t0002g0062	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.289-2436G>A c.289-2436G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124035091
chrX:124035500	G G	A A	1	a0001c0001t0001g0238 a0001c0001t0001g0238	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.289-2027G>A c.289-2027G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124035500
chrX:124035756	ATG ATG	A A	83	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(80): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	83	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(80): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.289-1768_289-1767d others(4): Show c.289-1768_289-1767delTG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34	INFO_REALIGN_3_PRIME	chrX	124035756
chrX:124035805	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.289-1722C>T c.289-1722C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124035805
chrX:124036215	A A	G G	2	a0001c0001t0001g0112 a0001c0001t0001g0153 a0001c0001t0001g0112 a0001c0001t0001g0153	2	NA18948.hp1 NA19067.hp1 NA18948.hp1 NA19067.hp1	intron_variant	MODIFIER	c.289-1312A>G c.289-1312A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036215
chrX:124036293	C C	T T	1	a0001c0001t0001g0252 a0001c0001t0001g0252	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.289-1234C>T c.289-1234C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036293
chrX:124036476	C C	T T	1	a0001c0001t0001g0113 a0001c0001t0001g0113	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.289-1051C>T c.289-1051C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036476
chrX:124036609	C C	T T	3	a0001c0001t0001g0074 a0001c0001t0001g0138 a0001c0001t0001g0160 a0001c0001t0001g0074 a0001c0001t0001g0138 a0001c0001t0001g0160	3	HG02257.hp1 HG02615.hp1 HG02622.hp2 HG02257.hp1 HG02615.hp1 HG02622.hp2	intron_variant	MODIFIER	c.289-918C>T c.289-918C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036609
chrX:124036658	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.289-869G>A c.289-869G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036658
chrX:124036701	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.289-826C>T c.289-826C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036701
chrX:124036715	C C	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.289-812C>T c.289-812C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036715
chrX:124036816	C C	T T	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.289-711C>T c.289-711C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036816
chrX:124036871	A A	G G	1	a0001c0001t0001g0253 a0001c0001t0001g0253	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.289-656A>G c.289-656A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124036871
chrX:124037097	G G	C C	1	a0001c0001t0001g0152 a0001c0001t0001g0152	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.289-430G>C c.289-430G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124037097
chrX:124037105	C C	T T	1	a0001c0001t0001g0077 a0001c0001t0001g0077	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.289-422C>T c.289-422C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124037105
chrX:124037138	G G	A A	1	a0001c0001t0002g0044 a0001c0001t0002g0044	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.289-389G>A c.289-389G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	5/34		chrX	124037138
chrX:124038018	TAAGC TAAGC	T T	2	a0001c0001t0001g0156 a0001c0001t0001g0239 a0001c0001t0001g0156 a0001c0001t0001g0239	2	NA18964.hp2 NA18971.hp1 NA18964.hp2 NA18971.hp1	intron_variant	MODIFIER	c.385+407_385+410del others(4): Show c.385+407_385+410delCAAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124038018
chrX:124038022	C C	T T	1	a0001c0001t0002g0033 a0001c0001t0002g0033	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.385+399C>T c.385+399C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124038022
chrX:124038203	C C	T T	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.385+580C>T c.385+580C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124038203
chrX:124038750	TA TA	T T	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.385+1133delA c.385+1133delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124038750
chrX:124038821	T T	C C	2	a0001c0001t0001g0105 a0003c0006t0001g0226 a0001c0001t0001g0105 a0003c0006t0001g0226	2	NA19080.hp2 NA19091.hp1 NA19080.hp2 NA19091.hp1	intron_variant	MODIFIER	c.385+1198T>C c.385+1198T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124038821
chrX:124038881	T T	A A	1	a0001c0001t0001g0215 a0001c0001t0001g0215	1	HG01175.hp1 HG01175.hp1	intron_variant	MODIFIER	c.385+1258T>A c.385+1258T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124038881
chrX:124039120	T T	C C	1	a0001c0001t0001g0077 a0001c0001t0001g0077	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.385+1497T>C c.385+1497T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039120
chrX:124039137	T T	TTTA TTTA	167	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(164): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0180 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0021 a0001c0001t0002g0024 a0001c0001t0002g0062 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	167	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(164): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01123.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02109.hp1 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.385+1544_385+1546d others(5): Show c.385+1544_385+1546dupATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039137
chrX:124039137	T T	TTTATTA TTTATTA	21	a0001c0001t0001g0056 a0001c0001t0001g0079 a0001c0001t0001g0084 others(18): Show a0001c0001t0001g0056 a0001c0001t0001g0079 a0001c0001t0001g0084 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0102 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0134 a0001c0001t0001g0145 a0001c0001t0001g0148 a0001c0001t0001g0161 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0190 a0001c0001t0001g0200 a0001c0001t0001g0211 a0001c0001t0001g0230 a0001c0001t0001g0254	21	HG01261.hp1 HG01361.hp2 HG01433.hp1 others(18): Show HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01934.hp1 HG02083.hp1 HG02109.hp2 HG02257.hp2 HG02723.hp2 HG02886.hp2 HG02897.hp2 HG03239.hp2 HG03654.hp1 NA18612.hp1 NA18947.hp2 NA18954.hp1 NA18967.hp1 NA18984.hp1 NA19003.hp2 NA19056.hp1 NA19087.hp1 NA21309.hp1	intron_variant	MODIFIER	c.385+1541_385+1546d others(8): Show c.385+1541_385+1546dupATTATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039137
chrX:124039137	T T	TTTATTAT others(2): Show TTTATTATTA	6	a0001c0001t0001g0052 a0001c0001t0001g0086 a0001c0001t0001g0090 others(3): Show a0001c0001t0001g0052 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0107 a0001c0001t0001g0240 a0001c0001t0001g0252	6	HG01099.hp1 HG01167.hp1 HG02965.hp1 others(3): Show HG01099.hp1 HG01167.hp1 HG02965.hp1 HG03239.hp1 HG03688.hp1 HG03831.hp1	intron_variant	MODIFIER	c.385+1538_385+1546d others(11): Show c.385+1538_385+1546dupATTATTATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039137
chrX:124039137	T T	TTTATTAT others(8): Show TTTATTATTATTATTA	2	a0001c0001t0001g0076 a0001c0003t0001g0078 a0001c0001t0001g0076 a0001c0003t0001g0078	2	HG02886.hp1 HG03579.hp1 HG02886.hp1 HG03579.hp1	intron_variant	MODIFIER	c.385+1532_385+1546d others(17): Show c.385+1532_385+1546dupATTATTATTATTATT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039137
chrX:124039223	A A	C C	1	a0001c0001t0001g0096 a0001c0001t0001g0096	1	NA18954.hp1 NA18954.hp1	intron_variant	MODIFIER	c.385+1600A>C c.385+1600A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039223
chrX:124039233	G G	T T	1	a0001c0001t0001g0129 a0001c0001t0001g0129	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.385+1610G>T c.385+1610G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039233
chrX:124039397	C C	T T	1	a0001c0001t0001g0240 a0001c0001t0001g0240	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.385+1774C>T c.385+1774C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039397
chrX:124039511	A A	G G	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.385+1888A>G c.385+1888A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039511
chrX:124039586	A A	AGTTT AGTTT	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.385+1986_385+1989d others(6): Show c.385+1986_385+1989dupTTGT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039586
chrX:124039609	T T	C C	4	a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 others(1): Show a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 a0001c0001t0005g0027	4	HG02109.hp1 HG02809.hp2 HG03540.hp2 others(1): Show HG02109.hp1 HG02809.hp2 HG03540.hp2 NA18960.hp1	intron_variant	MODIFIER	c.385+1986T>C c.385+1986T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039609
chrX:124039640	CT CT	C C	188	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(185): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0023 a0001c0001t0002g0050 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	188	HG00140.hp1 HG00438.hp2 HG00558.hp2 others(185): Show HG00140.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.385+2032delT c.385+2032delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039640
chrX:124039640	CTT CTT	C C	3	a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0248 a0001c0001t0001g0238 a0001c0001t0001g0245 a0001c0001t0001g0248	3	NA18955.hp1 NA18961.hp1 NA19055.hp1 NA18955.hp1 NA18961.hp1 NA19055.hp1	intron_variant	MODIFIER	c.385+2031_385+2032d others(4): Show c.385+2031_385+2032delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039640
chrX:124039640	CTTTTT CTTTTT	C C	1	a0001c0001t0001g0268 a0001c0001t0001g0268	1	HG01361.hp1 HG01361.hp1	intron_variant	MODIFIER	c.385+2028_385+2032d others(7): Show c.385+2028_385+2032delTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124039640
chrX:124039849	T T	G G	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.385+2226T>G c.385+2226T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124039849
chrX:124040286	G G	T T	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.386-2283G>T c.386-2283G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040286
chrX:124040389	C C	A A	261	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(258): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	261	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(258): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.386-2180C>A c.386-2180C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040389
chrX:124040522	G G	A A	1	a0001c0001t0001g0098 a0001c0001t0001g0098	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.386-2047G>A c.386-2047G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040522
chrX:124040543	G G	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.386-2026G>T c.386-2026G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040543
chrX:124040838	T T	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.386-1731T>A c.386-1731T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040838
chrX:124040841	T T	C C	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.386-1728T>C c.386-1728T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040841
chrX:124040854	C C	CT CT	55	a0001c0001t0001g0005 a0001c0001t0001g0053 a0001c0001t0001g0055 others(52): Show a0001c0001t0001g0005 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0071 a0001c0001t0001g0079 a0001c0001t0001g0082 a0001c0001t0001g0089 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0103 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0143 a0001c0001t0001g0146 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0215 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0002g0002 a0001c0001t0002g0051 a0001c0001t0002g0062 a0001c0001t0008g0001 a0001c0003t0001g0078 a0001c0007t0001g0165	55	HG00597.hp2 HG00738.hp1 HG01175.hp1 others(52): Show HG00597.hp2 HG00738.hp1 HG01175.hp1 HG01175.hp2 HG01358.hp1 HG01496.hp2 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01993.hp2 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02280.hp2 HG02559.hp2 HG02647.hp1 HG02723.hp1 HG02809.hp1 HG02886.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG03130.hp1 HG03209.hp1 HG03239.hp2 HG03486.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18949.hp2 NA18957.hp1 NA18965.hp1 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19007.hp1 NA19009.hp1 NA19062.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19088.hp1 NA19089.hp1	intron_variant	MODIFIER	c.386-1695dupT c.386-1695dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124040854
chrX:124040854	C C	CTT CTT	3	a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0152 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0152	3	HG02148.hp1 HG02735.hp1 NA18964.hp1 HG02148.hp1 HG02735.hp1 NA18964.hp1	intron_variant	MODIFIER	c.386-1696_386-1695d others(4): Show c.386-1696_386-1695dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124040854
chrX:124040854	CT CT	C C	4	a0001c0001t0001g0081 a0001c0001t0001g0189 a0001c0001t0001g0190 others(1): Show a0001c0001t0001g0081 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0004g0003	4	HG02257.hp2 HG02258.hp1 HG02976.hp1 others(1): Show HG02257.hp2 HG02258.hp1 HG02976.hp1 NA19081.hp1	intron_variant	MODIFIER	c.386-1695delT c.386-1695delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124040854
chrX:124040856	T T	C C	1	a0001c0001t0002g0049 a0001c0001t0002g0049	1	NA19082.hp1 NA19082.hp1	intron_variant	MODIFIER	c.386-1713T>C c.386-1713T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040856
chrX:124040934	C C	T T	105	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 others(102): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	105	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(102): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.386-1635C>T c.386-1635C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124040934
chrX:124041036	T T	G G	1	a0001c0001t0001g0188 a0001c0001t0001g0188	1	HG02723.hp1 HG02723.hp1	intron_variant	MODIFIER	c.386-1533T>G c.386-1533T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041036
chrX:124041094	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.386-1475G>A c.386-1475G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041094
chrX:124041218	A A	AT AT	1	a0001c0003t0001g0078 a0001c0003t0001g0078	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.386-1336dupT c.386-1336dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124041218
chrX:124041218	A A	T T	1	a0001c0001t0001g0149 a0001c0001t0001g0149	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.386-1351A>T c.386-1351A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041218
chrX:124041218	AT AT	A A	81	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0077 others(78): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0090 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0070 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0027 a0001c0001t0010g0164 a0001c0002t0001g0069 a0002c0004t0001g0255 a0003c0006t0001g0226	81	HG00438.hp2 HG00558.hp1 HG00621.hp1 others(78): Show HG00438.hp2 HG00558.hp1 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01361.hp1 HG01496.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.386-1336delT c.386-1336delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124041218
chrX:124041218	ATT ATT	A A	2	a0001c0001t0001g0202 a0001c0001t0001g0238 a0001c0001t0001g0202 a0001c0001t0001g0238	2	HG03017.hp1 NA19055.hp1 HG03017.hp1 NA19055.hp1	intron_variant	MODIFIER	c.386-1337_386-1336d others(4): Show c.386-1337_386-1336delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124041218
chrX:124041241	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.386-1328G>A c.386-1328G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041241
chrX:124041409	A A	G G	1	a0001c0001t0001g0206 a0001c0001t0001g0206	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.386-1160A>G c.386-1160A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041409
chrX:124041419	A A	G G	1	a0001c0001t0001g0117 a0001c0001t0001g0117	1	HG03239.hp2 HG03239.hp2	intron_variant	MODIFIER	c.386-1150A>G c.386-1150A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041419
chrX:124041422	G G	GGC GGC	1	a0001c0001t0006g0009 a0001c0001t0006g0009	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.386-1140_386-1139d others(4): Show c.386-1140_386-1139dupGC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34	INFO_REALIGN_3_PRIME	chrX	124041422
chrX:124041426	C C	T T	2	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0174 a0001c0001t0004g0175	2	HG02818.hp2 HG02976.hp2 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.386-1143C>T c.386-1143C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041426
chrX:124041466	C C	T T	1	a0001c0001t0002g0222 a0001c0001t0002g0222	1	HG02683.hp1 HG02683.hp1	intron_variant	MODIFIER	c.386-1103C>T c.386-1103C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041466
chrX:124041472	A A	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.386-1097A>C c.386-1097A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041472
chrX:124041650	A A	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.386-919A>T c.386-919A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041650
chrX:124041789	A A	G G	3	a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	3	HG01952.hp1 HG02280.hp2 NA18522.hp1 HG01952.hp1 HG02280.hp2 NA18522.hp1	intron_variant	MODIFIER	c.386-780A>G c.386-780A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041789
chrX:124041840	T T	C C	5	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0004g0003	5	HG01884.hp2 HG02630.hp2 HG02976.hp1 others(2): Show HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 NA20300.hp2	intron_variant	MODIFIER	c.386-729T>C c.386-729T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041840
chrX:124041888	CAT CAT	C C	1	a0001c0001t0001g0211 a0001c0001t0001g0211	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.386-680_386-679del others(2): Show c.386-680_386-679delAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041888
chrX:124041938	A A	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.386-631A>G c.386-631A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124041938
chrX:124042038	A A	C C	1	a0001c0001t0001g0273 a0001c0001t0001g0273	1	NA18975.hp1 NA18975.hp1	intron_variant	MODIFIER	c.386-531A>C c.386-531A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124042038
chrX:124042263	G G	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.386-306G>A c.386-306G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124042263
chrX:124042402	C C	G G	1	a0001c0001t0001g0211 a0001c0001t0001g0211	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.386-167C>G c.386-167C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124042402
chrX:124042533	C C	T T	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.386-36C>T c.386-36C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	6/34		chrX	124042533
chrX:124042786	C C	T T	2	a0001c0001t0001g0230 a0001c0001t0001g0235 a0001c0001t0001g0230 a0001c0001t0001g0235	2	HG03654.hp1 HG04184.hp1 HG03654.hp1 HG04184.hp1	intron_variant	MODIFIER	c.462+141C>T c.462+141C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124042786
chrX:124042857	C C	CA CA	1	a0001c0001t0001g0263 a0001c0001t0001g0263	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.462+220dupA c.462+220dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34	INFO_REALIGN_3_PRIME	chrX	124042857
chrX:124042872	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.462+227G>A c.462+227G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124042872
chrX:124042946	C C	T T	1	a0001c0001t0001g0236 a0001c0001t0001g0236	1	HG01346.hp2 HG01346.hp2	intron_variant	MODIFIER	c.462+301C>T c.462+301C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124042946
chrX:124043012	C C	CA CA	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.462+376dupA c.462+376dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34	INFO_REALIGN_3_PRIME	chrX	124043012
chrX:124043109	G G	A A	4	a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 others(1): Show a0001c0001t0001g0054 a0001c0001t0001g0102 a0001c0001t0001g0137 a0001c0001t0002g0136	4	HG00639.hp1 HG01361.hp2 HG02683.hp2 others(1): Show HG00639.hp1 HG01361.hp2 HG02683.hp2 HG03669.hp1	intron_variant	MODIFIER	c.462+464G>A c.462+464G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124043109
chrX:124043130	G G	GT GT	3	a0001c0001t0001g0153 a0001c0001t0001g0190 a0001c0001t0002g0198 a0001c0001t0001g0153 a0001c0001t0001g0190 a0001c0001t0002g0198	3	HG02257.hp2 NA19006.hp1 NA19067.hp1 HG02257.hp2 NA19006.hp1 NA19067.hp1	intron_variant	MODIFIER	c.462+496dupT c.462+496dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34	INFO_REALIGN_3_PRIME	chrX	124043130
chrX:124043195	A A	G G	4	a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 others(1): Show a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276	4	HG00558.hp2 NA18966.hp1 NA18975.hp1 others(1): Show HG00558.hp2 NA18966.hp1 NA18975.hp1 NA18979.hp2	intron_variant	MODIFIER	c.462+550A>G c.462+550A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124043195
chrX:124043207	C C	CA CA	1	a0001c0001t0001g0248 a0001c0001t0001g0248	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.462+564dupA c.462+564dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34	INFO_REALIGN_3_PRIME	chrX	124043207
chrX:124043211	C C	T T	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.462+566C>T c.462+566C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124043211
chrX:124043299	C C	T T	1	a0001c0003t0001g0078 a0001c0003t0001g0078	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.462+654C>T c.462+654C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124043299
chrX:124043437	C C	T T	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.462+792C>T c.462+792C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124043437
chrX:124043505	G G	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.462+860G>A c.462+860G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124043505
chrX:124043729	TA TA	T T	1	a0001c0001t0001g0241 a0001c0001t0001g0241	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.462+1089delA c.462+1089delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34	INFO_REALIGN_3_PRIME	chrX	124043729
chrX:124043779	T T	TC TC	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.462+1141dupC c.462+1141dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34	INFO_REALIGN_3_PRIME	chrX	124043779
chrX:124044076	T T	C C	2	a0001c0001t0001g0224 a0001c0001t0001g0232 a0001c0001t0001g0224 a0001c0001t0001g0232	2	NA18970.hp1 NA18974.hp1 NA18970.hp1 NA18974.hp1	intron_variant	MODIFIER	c.463-1088T>C c.463-1088T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124044076
chrX:124044169	T T	C C	109	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(106): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	109	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(106): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.463-995T>C c.463-995T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124044169
chrX:124044493	C C	T T	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.463-671C>T c.463-671C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	7/34		chrX	124044493
chrX:124045897	C C	T T	1	a0001c0001t0005g0019 a0001c0001t0005g0019	1	HG00597.hp1 HG00597.hp1	intron_variant	MODIFIER	c.667+529C>T c.667+529C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124045897
chrX:124045951	A A	T T	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.667+583A>T c.667+583A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124045951
chrX:124045968	T T	G G	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.667+600T>G c.667+600T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124045968
chrX:124046026	C C	T T	2	a0001c0001t0007g0141 a0004c0005t0007g0083 a0001c0001t0007g0141 a0004c0005t0007g0083	2	NA18941.hp2 NA19068.hp1 NA18941.hp2 NA19068.hp1	intron_variant	MODIFIER	c.667+658C>T c.667+658C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046026
chrX:124046263	A A	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.667+895A>T c.667+895A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046263
chrX:124046275	G G	A A	2	a0001c0001t0001g0120 a0001c0001t0001g0134 a0001c0001t0001g0120 a0001c0001t0001g0134	2	NA19003.hp2 NA19056.hp1 NA19003.hp2 NA19056.hp1	intron_variant	MODIFIER	c.667+907G>A c.667+907G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046275
chrX:124046410	A A	C C	1	a0001c0001t0001g0152 a0001c0001t0001g0152	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.668-944A>C c.668-944A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046410
chrX:124046417	C C	G G	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.668-937C>G c.668-937C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046417
chrX:124046484	ATTAAC ATTAAC	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.668-866_668-862del others(5): Show c.668-866_668-862delACTTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34	INFO_REALIGN_3_PRIME	chrX	124046484
chrX:124046724	G G	GT GT	3	a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	3	HG01952.hp1 HG02280.hp2 NA18522.hp1 HG01952.hp1 HG02280.hp2 NA18522.hp1	intron_variant	MODIFIER	c.668-626dupT c.668-626dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34	INFO_REALIGN_3_PRIME	chrX	124046724
chrX:124046737	G G	A A	12	a0001c0001t0002g0020 a0001c0001t0002g0024 a0001c0001t0002g0025 others(9): Show a0001c0001t0002g0020 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051	12	HG01515.hp1 HG01517.hp2 HG03490.hp1 others(9): Show HG01515.hp1 HG01517.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03704.hp2 HG03831.hp2 NA18975.hp2 NA18979.hp1 NA19000.hp1 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.668-617G>A c.668-617G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046737
chrX:124046931	T T	C C	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.668-423T>C c.668-423T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046931
chrX:124046962	G G	A A	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.668-392G>A c.668-392G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046962
chrX:124046997	C C	T T	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.668-357C>T c.668-357C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124046997
chrX:124047027	G G	C C	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.668-327G>C c.668-327G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	8/34		chrX	124047027
chrX:124047596	GT GT	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.819+96delT c.819+96delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34	INFO_REALIGN_3_PRIME	chrX	124047596
chrX:124047694	C C	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.819+189C>G c.819+189C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124047694
chrX:124047701	G G	A A	46	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(43): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	46	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(43): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.819+196G>A c.819+196G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124047701
chrX:124047746	C C	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.819+241C>T c.819+241C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124047746
chrX:124047946	A A	G G	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	5	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(2): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.819+441A>G c.819+441A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124047946
chrX:124048038	C C	A A	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG03669.hp2 HG03669.hp2	intron_variant	MODIFIER	c.819+533C>A c.819+533C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048038
chrX:124048073	A A	G G	1	a0001c0001t0001g0100 a0001c0001t0001g0100	1	HG02148.hp1 HG02148.hp1	intron_variant	MODIFIER	c.819+568A>G c.819+568A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048073
chrX:124048145	A A	G G	261	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(258): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	261	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(258): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.819+640A>G c.819+640A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048145
chrX:124048174	T T	C C	1	a0001c0001t0001g0156 a0001c0001t0001g0156	1	NA18971.hp1 NA18971.hp1	intron_variant	MODIFIER	c.819+669T>C c.819+669T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048174
chrX:124048206	G G	C C	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.819+701G>C c.819+701G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048206
chrX:124048320	A A	G G	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.820-685A>G c.820-685A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048320
chrX:124048443	G G	GT GT	1	a0001c0001t0002g0062 a0001c0001t0002g0062	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.820-554dupT c.820-554dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34	INFO_REALIGN_3_PRIME	chrX	124048443
chrX:124048515	A A	G G	1	a0001c0001t0003g0208 a0001c0001t0003g0208	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.820-490A>G c.820-490A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048515
chrX:124048626	T T	C C	10	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(7): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0003t0001g0008	10	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(7): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03471.hp1 HG03486.hp1 NA20805.hp1	intron_variant	MODIFIER	c.820-379T>C c.820-379T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048626
chrX:124048725	C C	T T	1	a0001c0001t0002g0033 a0001c0001t0002g0033	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.820-280C>T c.820-280C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048725
chrX:124048854	A A	C C	2	a0001c0001t0001g0159 a0001c0001t0009g0139 a0001c0001t0001g0159 a0001c0001t0009g0139	2	HG00735.hp1 HG01069.hp1 HG00735.hp1 HG01069.hp1	intron_variant	MODIFIER	c.820-151A>C c.820-151A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048854
chrX:124048920	C C	CT CT	1	a0001c0001t0001g0220 a0001c0001t0001g0220	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.820-78dupT c.820-78dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34	INFO_REALIGN_3_PRIME	chrX	124048920
chrX:124048926	T T	C C	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.820-79T>C c.820-79T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	9/34		chrX	124048926
chrX:124049252	G G	A A	1	a0001c0001t0001g0149 a0001c0001t0001g0149	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.893+174G>A c.893+174G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124049252
chrX:124049377	G G	A A	2	a0001c0001t0001g0260 a0001c0001t0002g0193 a0001c0001t0001g0260 a0001c0001t0002g0193	2	NA18950.hp1 NA19003.hp1 NA18950.hp1 NA19003.hp1	intron_variant	MODIFIER	c.893+299G>A c.893+299G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124049377
chrX:124049448	G G	GT GT	1	a0001c0001t0001g0130 a0001c0001t0001g0130	1	NA18981.hp1 NA18981.hp1	intron_variant	MODIFIER	c.893+371dupT c.893+371dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34	INFO_REALIGN_3_PRIME	chrX	124049448
chrX:124049871	T T	G G	1	a0001c0001t0001g0205 a0001c0001t0001g0205	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.894-315T>G c.894-315T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124049871
chrX:124049886	C C	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.894-300C>G c.894-300C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124049886
chrX:124049961	G G	A A	1	a0001c0001t0001g0166 a0001c0001t0001g0166	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.894-225G>A c.894-225G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124049961
chrX:124050115	C C	G G	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.894-71C>G c.894-71C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124050115
chrX:124050151	A A	G G	5	a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 others(2): Show a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051	5	NA18975.hp2 NA18979.hp1 NA19000.hp1 others(2): Show NA18975.hp2 NA18979.hp1 NA19000.hp1 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.894-35A>G c.894-35A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124050151
chrX:124050177	C C	T T	10	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(7): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0003t0001g0008	10	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(7): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03471.hp1 HG03486.hp1 NA20805.hp1	intron_variant	MODIFIER	c.894-9C>T c.894-9C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	10/34		chrX	124050177
chrX:124050434	T T	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.1017+125T>A c.1017+125T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34		chrX	124050434
chrX:124050634	TA TA	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.1017+335delA c.1017+335delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34	INFO_REALIGN_3_PRIME	chrX	124050634
chrX:124050788	T T	C C	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1018-333T>C c.1018-333T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34		chrX	124050788
chrX:124051099	C C	CT CT	20	a0001c0001t0001g0004 a0001c0001t0001g0053 a0001c0001t0001g0085 others(17): Show a0001c0001t0001g0004 a0001c0001t0001g0053 a0001c0001t0001g0085 a0001c0001t0001g0149 a0001c0001t0001g0161 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0190 a0001c0001t0001g0249 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0003t0001g0008 a0004c0005t0007g0083	20	HG00280.hp1 HG01106.hp1 HG01123.hp2 others(17): Show HG00280.hp1 HG01106.hp1 HG01123.hp2 HG01175.hp2 HG01433.hp1 HG01952.hp1 HG02257.hp2 HG02280.hp2 HG02559.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 HG03471.hp1 HG04184.hp2 NA18522.hp1 NA18941.hp1 NA18941.hp2 NA18999.hp2 NA20805.hp1	splice_acceptor_variant&intron_variant	HIGH	c.1018-3dupT c.1018-3dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34	INFO_REALIGN_3_PRIME	chrX	124051099
chrX:124051099	C C	CTT CTT	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	splice_acceptor_variant&intron_variant	HIGH	c.1018-4_1018-3dupTT c.1018-4_1018-3dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34	INFO_REALIGN_3_PRIME	chrX	124051099
chrX:124051099	CT CT	C C	5	a0001c0001t0001g0134 a0001c0001t0001g0224 a0001c0001t0001g0241 others(2): Show a0001c0001t0001g0134 a0001c0001t0001g0224 a0001c0001t0001g0241 a0001c0001t0002g0021 a0001c0001t0009g0139	5	HG01069.hp1 NA18969.hp1 NA18974.hp1 others(2): Show HG01069.hp1 NA18969.hp1 NA18974.hp1 NA19003.hp2 NA19089.hp1	splice_region_variant&intron_variant	LOW	c.1018-3delT c.1018-3delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34	INFO_REALIGN_3_PRIME	chrX	124051099
chrX:124051099	CTT CTT	C C	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	splice_region_variant&intron_variant	LOW	c.1018-4_1018-3delTT c.1018-4_1018-3delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	11/34	INFO_REALIGN_3_PRIME	chrX	124051099
chrX:124051499	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1196+105G>A c.1196+105G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124051499
chrX:124051673	C C	T T	1	a0001c0001t0001g0240 a0001c0001t0001g0240	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.1196+279C>T c.1196+279C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124051673
chrX:124051688	T T	C C	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1196+294T>C c.1196+294T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124051688
chrX:124052033	A A	G G	1	a0001c0001t0001g0128 a0001c0001t0001g0128	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1196+639A>G c.1196+639A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052033
chrX:124052050	A A	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.1196+656A>G c.1196+656A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052050
chrX:124052062	GTC GTC	G G	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.1196+670_1196+671d others(4): Show c.1196+670_1196+671delCT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124052062
chrX:124052229	C C	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1196+835C>T c.1196+835C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052229
chrX:124052345	TC TC	T T	1	a0001c0001t0001g0224 a0001c0001t0001g0224	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1196+955delC c.1196+955delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124052345
chrX:124052424	C C	T T	2	a0001c0001t0002g0040 a0001c0001t0002g0057 a0001c0001t0002g0040 a0001c0001t0002g0057	2	HG02080.hp2 HG02132.hp1 HG02080.hp2 HG02132.hp1	intron_variant	MODIFIER	c.1196+1030C>T c.1196+1030C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052424
chrX:124052501	G G	A A	7	a0001c0001t0001g0192 a0001c0001t0001g0205 a0001c0001t0001g0217 others(4): Show a0001c0001t0001g0192 a0001c0001t0001g0205 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0239 a0001c0001t0001g0249 a0001c0001t0001g0253	7	HG00621.hp1 HG02129.hp1 NA18941.hp1 others(4): Show HG00621.hp1 HG02129.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18957.hp2 NA18964.hp2	intron_variant	MODIFIER	c.1196+1107G>A c.1196+1107G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052501
chrX:124052675	C C	A A	1	a0001c0001t0002g0021 a0001c0001t0002g0021	1	NA18969.hp1 NA18969.hp1	intron_variant	MODIFIER	c.1196+1281C>A c.1196+1281C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052675
chrX:124052815	C C	CT CT	1	a0001c0001t0001g0180 a0001c0001t0001g0180	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.1196+1437dupT c.1196+1437dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124052815
chrX:124052938	TC TC	T T	1	a0001c0001t0001g0224 a0001c0001t0001g0224	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1196+1547delC c.1196+1547delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124052938
chrX:124052973	C C	T T	13	a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0109 others(10): Show a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0109 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0156 a0001c0001t0001g0163 a0001c0001t0001g0176 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0267 a0001c0001t0008g0001 a0001c0007t0001g0165	13	NA18957.hp1 NA18965.hp1 NA18971.hp1 others(10): Show NA18957.hp1 NA18965.hp1 NA18971.hp1 NA18994.hp1 NA19007.hp1 NA19009.hp1 NA19062.hp1 NA19065.hp2 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19088.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1196+1579C>T c.1196+1579C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124052973
chrX:124053051	A A	C C	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.1196+1657A>C c.1196+1657A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124053051
chrX:124053222	A A	T T	3	a0001c0001t0002g0022 a0001c0001t0002g0039 a0001c0001t0002g0045 a0001c0001t0002g0022 a0001c0001t0002g0039 a0001c0001t0002g0045	3	NA18990.hp1 NA19011.hp2 NA19083.hp1 NA18990.hp1 NA19011.hp2 NA19083.hp1	intron_variant	MODIFIER	c.1196+1828A>T c.1196+1828A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124053222
chrX:124053371	T T	C C	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1196+1977T>C c.1196+1977T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124053371
chrX:124053454	A A	AT AT	4	a0001c0001t0001g0188 a0001c0001t0001g0202 a0001c0001t0001g0248 others(1): Show a0001c0001t0001g0188 a0001c0001t0001g0202 a0001c0001t0001g0248 a0001c0001t0002g0198	4	HG02723.hp1 HG03017.hp1 NA18961.hp1 others(1): Show HG02723.hp1 HG03017.hp1 NA18961.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1196+2072dupT c.1196+2072dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124053454
chrX:124053454	AT AT	A A	10	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(7): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	10	HG01496.hp1 HG01884.hp2 HG02630.hp2 others(7): Show HG01496.hp1 HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.1196+2072delT c.1196+2072delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124053454
chrX:124053735	T T	C C	1	a0001c0001t0004g0003 a0001c0001t0004g0003	1	HG02976.hp1 HG02976.hp1	intron_variant	MODIFIER	c.1196+2341T>C c.1196+2341T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124053735
chrX:124054082	A A	G G	1	a0001c0001t0001g0253 a0001c0001t0001g0253	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.1197-2046A>G c.1197-2046A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124054082
chrX:124054134	G G	A A	81	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(78): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0002c0004t0001g0255 a0003c0006t0001g0226	81	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(78): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1197-1994G>A c.1197-1994G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124054134
chrX:124054274	T T	C C	5	a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 others(2): Show a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0251 a0001c0001t0001g0263	5	NA18981.hp2 NA18988.hp1 NA18989.hp1 others(2): Show NA18981.hp2 NA18988.hp1 NA18989.hp1 NA19011.hp1 NA19063.hp1	intron_variant	MODIFIER	c.1197-1854T>C c.1197-1854T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124054274
chrX:124054549	A A	G G	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.1197-1579A>G c.1197-1579A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124054549
chrX:124054764	G G	GT GT	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	NA19087.hp1 NA19087.hp1	intron_variant	MODIFIER	c.1197-1356dupT c.1197-1356dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124054764
chrX:124054902	A A	ACT ACT	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	NA19087.hp1 NA19087.hp1	intron_variant	MODIFIER	c.1197-1225_1197-122 others(6): Show c.1197-1225_1197-1224dupCT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124054902
chrX:124054927	A A	AT AT	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	NA19087.hp1 NA19087.hp1	intron_variant	MODIFIER	c.1197-1191dupT c.1197-1191dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124054927
chrX:124054944	G G	GT GT	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1197-1178dupT c.1197-1178dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124054944
chrX:124054951	G G	A A	1	a0001c0001t0001g0119 a0001c0001t0001g0119	1	HG01261.hp1 HG01261.hp1	intron_variant	MODIFIER	c.1197-1177G>A c.1197-1177G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124054951
chrX:124055128	T T	C C	1	a0001c0001t0001g0148 a0001c0001t0001g0148	1	NA21309.hp1 NA21309.hp1	intron_variant	MODIFIER	c.1197-1000T>C c.1197-1000T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055128
chrX:124055139	A A	G G	3	a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177	3	HG02109.hp1 HG02809.hp2 HG03540.hp2 HG02109.hp1 HG02809.hp2 HG03540.hp2	intron_variant	MODIFIER	c.1197-989A>G c.1197-989A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055139
chrX:124055180	T T	C C	3	a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034	3	HG00597.hp1 NA18944.hp1 NA18960.hp1 HG00597.hp1 NA18944.hp1 NA18960.hp1	intron_variant	MODIFIER	c.1197-948T>C c.1197-948T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055180
chrX:124055517	T T	C C	2	a0001c0001t0001g0203 a0001c0001t0001g0207 a0001c0001t0001g0203 a0001c0001t0001g0207	2	HG02486.hp1 HG02572.hp1 HG02486.hp1 HG02572.hp1	intron_variant	MODIFIER	c.1197-611T>C c.1197-611T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055517
chrX:124055662	A A	C C	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1197-466A>C c.1197-466A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055662
chrX:124055663	CATGGTGT others(5): Show CATGGTGTTCAGT	C C	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1197-463_1197-452d others(14): Show c.1197-463_1197-452delTGGTGTTCAGTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124055663
chrX:124055727	A A	T T	2	a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0147 a0001c0001t0001g0162	2	HG02451.hp2 HG02818.hp1 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.1197-401A>T c.1197-401A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055727
chrX:124055773	G G	C C	62	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(59): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	62	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(59): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02818.hp2 HG02896.hp1 HG02976.hp2 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.1197-355G>C c.1197-355G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055773
chrX:124055948	T T	G G	2	a0001c0001t0001g0112 a0001c0001t0001g0153 a0001c0001t0001g0112 a0001c0001t0001g0153	2	NA18948.hp1 NA19067.hp1 NA18948.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1197-180T>G c.1197-180T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124055948
chrX:124055996	G G	GT GT	264	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(261): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	264	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(261): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1197-122dupT c.1197-122dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124055996
chrX:124055996	G G	GTT GTT	10	a0001c0001t0001g0052 a0001c0001t0001g0153 a0001c0001t0001g0180 others(7): Show a0001c0001t0001g0052 a0001c0001t0001g0153 a0001c0001t0001g0180 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0003g0244	10	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(7): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02055.hp1 HG03688.hp1 NA18959.hp1 NA18979.hp1 NA19000.hp1 NA19067.hp1 NA20805.hp1	intron_variant	MODIFIER	c.1197-123_1197-122d others(4): Show c.1197-123_1197-122dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124055996
chrX:124055996	G G	GTTT GTTT	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.1197-124_1197-122d others(5): Show c.1197-124_1197-122dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34	INFO_REALIGN_3_PRIME	chrX	124055996
chrX:124056082	A A	G G	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.1197-46A>G c.1197-46A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	13/34		chrX	124056082
chrX:124056455	TG TG	T T	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.1304+223delG c.1304+223delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056455
chrX:124056500	G G	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.1304+265G>A c.1304+265G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124056500
chrX:124056589	C C	T T	2	a0001c0001t0001g0084 a0001c0001t0002g0151 a0001c0001t0001g0084 a0001c0001t0002g0151	2	HG01891.hp1 HG02886.hp2 HG01891.hp1 HG02886.hp2	intron_variant	MODIFIER	c.1304+354C>T c.1304+354C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124056589
chrX:124056650	G G	A A	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.1304+415G>A c.1304+415G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124056650
chrX:124056676	T T	TGAGCC TGAGCC	2	a0001c0001t0001g0071 a0001c0001t0001g0091 a0001c0001t0001g0071 a0001c0001t0001g0091	2	HG03209.hp1 NA18906.hp2 HG03209.hp1 NA18906.hp2	intron_variant	MODIFIER	c.1304+445_1304+449d others(7): Show c.1304+445_1304+449dupCCGAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056676
chrX:124056731	T T	TA TA	230	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(227): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0060 a0001c0001t0002g0070 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0003t0001g0008 a0001c0007t0001g0165 a0002c0004t0001g0255 a0004c0005t0007g0083	230	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(227): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01081.hp2 HG01099.hp1 HG01123.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1304+519dupA c.1304+519dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056731
chrX:124056731	T T	TAA TAA	22	a0001c0001t0001g0074 a0001c0001t0001g0133 a0001c0001t0001g0140 others(19): Show a0001c0001t0001g0074 a0001c0001t0001g0133 a0001c0001t0001g0140 a0001c0001t0001g0147 a0001c0001t0001g0153 a0001c0001t0001g0162 a0001c0001t0001g0177 a0001c0001t0001g0195 a0001c0001t0001g0204 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0235 a0001c0001t0001g0243 a0001c0001t0001g0254 a0001c0001t0001g0263 a0001c0001t0002g0020 a0001c0001t0002g0057 a0001c0001t0002g0136 a0001c0001t0002g0198 a0001c0001t0002g0259 a0001c0002t0001g0069 a0003c0006t0001g0226	22	HG01074.hp1 HG01109.hp1 HG01175.hp1 others(19): Show HG01074.hp1 HG01109.hp1 HG01175.hp1 HG01496.hp1 HG02080.hp2 HG02109.hp2 HG02145.hp1 HG02451.hp2 HG02615.hp1 HG02683.hp2 HG02809.hp2 HG02818.hp1 HG03195.hp2 HG03831.hp2 HG04184.hp1 NA18989.hp1 NA19005.hp1 NA19006.hp1 NA19064.hp2 NA19065.hp1 NA19067.hp1 NA19091.hp1	intron_variant	MODIFIER	c.1304+518_1304+519d others(4): Show c.1304+518_1304+519dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056731
chrX:124056731	T T	TAAA TAAA	2	a0001c0001t0001g0134 a0001c0001t0001g0252 a0001c0001t0001g0134 a0001c0001t0001g0252	2	HG03831.hp1 NA19003.hp2 HG03831.hp1 NA19003.hp2	intron_variant	MODIFIER	c.1304+517_1304+519d others(5): Show c.1304+517_1304+519dupAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056731
chrX:124056731	T T	TAAAA TAAAA	1	a0001c0001t0001g0132 a0001c0001t0001g0132	1	NA18747.hp1 NA18747.hp1	intron_variant	MODIFIER	c.1304+516_1304+519d others(6): Show c.1304+516_1304+519dupAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056731
chrX:124056731	T T	TAAAAA TAAAAA	1	a0001c0001t0001g0268 a0001c0001t0001g0268	1	HG01361.hp1 HG01361.hp1	intron_variant	MODIFIER	c.1304+515_1304+519d others(7): Show c.1304+515_1304+519dupAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056731
chrX:124056797	T T	C C	2	a0001c0001t0002g0038 a0001c0001t0002g0042 a0001c0001t0002g0038 a0001c0001t0002g0042	2	HG03710.hp1 HG03942.hp1 HG03710.hp1 HG03942.hp1	intron_variant	MODIFIER	c.1304+562T>C c.1304+562T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124056797
chrX:124056896	C C	CT CT	2	a0001c0001t0001g0178 a0001c0001t0001g0192 a0001c0001t0001g0178 a0001c0001t0001g0192	2	HG01884.hp2 HG02129.hp1 HG01884.hp2 HG02129.hp1	intron_variant	MODIFIER	c.1304+673dupT c.1304+673dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056896
chrX:124056896	CT CT	C C	176	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 others(173): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0004c0005t0007g0083	176	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(173): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp1 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp2 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp2 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18960.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18968.hp2 NA18969.hp1 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19064.hp2 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1304+673delT c.1304+673delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34	INFO_REALIGN_3_PRIME	chrX	124056896
chrX:124056956	G G	A A	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.1304+721G>A c.1304+721G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124056956
chrX:124057037	C C	T T	1	a0001c0001t0001g0109 a0001c0001t0001g0109	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.1304+802C>T c.1304+802C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124057037
chrX:124057165	A A	G G	1	a0001c0001t0002g0198 a0001c0001t0002g0198	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1305-701A>G c.1305-701A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124057165
chrX:124057453	G G	C C	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.1305-413G>C c.1305-413G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124057453
chrX:124057760	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.1305-106T>C c.1305-106T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124057760
chrX:124057815	A A	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1305-51A>G c.1305-51A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	14/34		chrX	124057815
chrX:124058072	A A	G G	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.1416+95A>G c.1416+95A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124058072
chrX:124058099	ACCCACTC others(1): Show ACCCACTCC	A A	5	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0004g0003	5	HG01884.hp2 HG02630.hp2 HG02976.hp1 others(2): Show HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 NA20300.hp2	intron_variant	MODIFIER	c.1416+135_1416+142d others(10): Show c.1416+135_1416+142delCTCCCCCA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124058099
chrX:124058124	T T	G G	6	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0075 others(3): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0075 a0001c0001t0001g0085 a0001c0001t0001g0104 a0001c0001t0001g0135	6	HG00673.hp1 HG02015.hp1 NA18940.hp1 others(3): Show HG00673.hp1 HG02015.hp1 NA18940.hp1 NA18999.hp2 NA19012.hp1 NA19066.hp1	intron_variant	MODIFIER	c.1416+147T>G c.1416+147T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124058124
chrX:124058154	C C	CT CT	64	a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 others(61): Show a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0076 a0001c0001t0001g0088 a0001c0001t0001g0091 a0001c0001t0001g0100 a0001c0001t0001g0119 a0001c0001t0001g0132 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0171 a0001c0001t0001g0181 a0001c0001t0001g0184 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0202 a0001c0001t0001g0215 a0001c0001t0001g0235 a0001c0001t0001g0245 a0001c0001t0001g0252 a0001c0001t0001g0258 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0198 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141	64	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(61): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01175.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02723.hp1 HG02738.hp1 HG02896.hp1 HG03017.hp1 HG03209.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03579.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04184.hp1 HG04184.hp2 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18944.hp1 NA18949.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA18999.hp1 NA19000.hp1 NA19006.hp1 NA19011.hp2 NA19064.hp2 NA19068.hp1 NA19082.hp1 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.1416+198dupT c.1416+198dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124058154
chrX:124058154	C C	CTT CTT	7	a0001c0001t0001g0012 a0001c0001t0001g0053 a0001c0001t0001g0111 others(4): Show a0001c0001t0001g0012 a0001c0001t0001g0053 a0001c0001t0001g0111 a0001c0001t0002g0028 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0057	7	HG02080.hp2 HG02165.hp2 HG02559.hp2 others(4): Show HG02080.hp2 HG02165.hp2 HG02559.hp2 HG02630.hp1 HG04115.hp1 NA19077.hp1 NA19083.hp1	intron_variant	MODIFIER	c.1416+197_1416+198d others(4): Show c.1416+197_1416+198dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124058154
chrX:124058154	C C	CTTT CTTT	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.1416+196_1416+198d others(5): Show c.1416+196_1416+198dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124058154
chrX:124058154	CT CT	C C	6	a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 others(3): Show a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0177 a0001c0001t0001g0249 a0001c0001t0001g0266 a0001c0001t0001g0268	6	HG01361.hp1 HG02109.hp1 HG02809.hp2 others(3): Show HG01361.hp1 HG02109.hp1 HG02809.hp2 HG03540.hp2 NA18941.hp1 NA19058.hp1	intron_variant	MODIFIER	c.1416+198delT c.1416+198delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124058154
chrX:124058157	T T	C C	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.1416+180T>C c.1416+180T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124058157
chrX:124058446	C C	T T	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.1416+469C>T c.1416+469C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124058446
chrX:124058569	A A	T T	1	a0001c0001t0001g0161 a0001c0001t0001g0161	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.1416+592A>T c.1416+592A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124058569
chrX:124058874	T T	C C	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.1416+897T>C c.1416+897T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124058874
chrX:124059088	G G	A A	37	a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0082 others(34): Show a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0082 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0134 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0150 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0261 a0001c0001t0002g0136 a0001c0001t0007g0141 a0001c0001t0009g0139 a0004c0005t0007g0083	37	HG00639.hp1 HG00735.hp1 HG00738.hp1 others(34): Show HG00639.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01256.hp1 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01943.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02148.hp1 HG02165.hp2 HG02683.hp2 HG03669.hp1 NA18612.hp1 NA18941.hp2 NA18947.hp2 NA18950.hp2 NA18954.hp1 NA18959.hp1 NA18967.hp1 NA18968.hp2 NA18981.hp1 NA18991.hp1 NA18995.hp1 NA19003.hp2 NA19056.hp1 NA19068.hp1 NA19079.hp1 NA19087.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1416+1111G>A c.1416+1111G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059088
chrX:124059133	A A	G G	2	a0001c0001t0001g0084 a0001c0001t0002g0151 a0001c0001t0001g0084 a0001c0001t0002g0151	2	HG01891.hp1 HG02886.hp2 HG01891.hp1 HG02886.hp2	intron_variant	MODIFIER	c.1416+1156A>G c.1416+1156A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059133
chrX:124059145	C C	T T	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.1416+1168C>T c.1416+1168C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059145
chrX:124059241	G G	A A	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.1416+1264G>A c.1416+1264G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059241
chrX:124059291	T T	C C	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1416+1314T>C c.1416+1314T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059291
chrX:124059576	A A	C C	1	a0001c0001t0001g0206 a0001c0001t0001g0206	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.1416+1599A>C c.1416+1599A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059576
chrX:124059687	G G	A A	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	NA19090.hp1 NA19090.hp1	intron_variant	MODIFIER	c.1417-1537G>A c.1417-1537G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059687
chrX:124059941	C C	CATAA CATAA	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.1417-1281_1417-127 others(8): Show c.1417-1281_1417-1278dupTAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124059941
chrX:124059999	A A	G G	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1417-1225A>G c.1417-1225A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124059999
chrX:124060145	T T	C C	1	a0001c0001t0001g0237 a0001c0001t0001g0237	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1417-1079T>C c.1417-1079T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124060145
chrX:124060375	C C	A A	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.1417-849C>A c.1417-849C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124060375
chrX:124060887	TC TC	T T	1	a0002c0004t0001g0255 a0002c0004t0001g0255	1	NA18969.hp2 NA18969.hp2	intron_variant	MODIFIER	c.1417-334delC c.1417-334delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124060887
chrX:124060926	A A	AC AC	10	a0001c0001t0001g0056 a0001c0001t0001g0123 a0001c0001t0001g0124 others(7): Show a0001c0001t0001g0056 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0140 a0001c0001t0001g0159 a0001c0001t0001g0261 a0001c0001t0002g0038 a0001c0001t0009g0139 a0001c0002t0001g0069 a0003c0006t0001g0226	10	HG00735.hp1 HG01069.hp1 HG01074.hp1 others(7): Show HG00735.hp1 HG01069.hp1 HG01074.hp1 HG01256.hp1 HG01496.hp1 HG02074.hp1 HG03710.hp1 NA18967.hp1 NA19091.hp1 NA20752.hp1	intron_variant	MODIFIER	c.1417-291dupC c.1417-291dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124060926
chrX:124060981	T T	TA TA	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.1417-237dupA c.1417-237dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34	INFO_REALIGN_3_PRIME	chrX	124060981
chrX:124060987	A A	T T	1	a0001c0001t0001g0180 a0001c0001t0001g0180	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.1417-237A>T c.1417-237A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124060987
chrX:124061017	T T	C C	60	a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0105 others(57): Show a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0002c0004t0001g0255 a0003c0006t0001g0226	60	HG00438.hp2 HG00621.hp1 HG01123.hp1 others(57): Show HG00438.hp2 HG00621.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1	intron_variant	MODIFIER	c.1417-207T>C c.1417-207T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124061017
chrX:124061183	T T	G G	2	a0001c0001t0001g0224 a0001c0001t0001g0232 a0001c0001t0001g0224 a0001c0001t0001g0232	2	NA18970.hp1 NA18974.hp1 NA18970.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1417-41T>G c.1417-41T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124061183
chrX:124061185	A A	C C	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.1417-39A>C c.1417-39A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	15/34		chrX	124061185
chrX:124061401	A A	G G	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.1534+60A>G c.1534+60A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34		chrX	124061401
chrX:124061417	CT CT	C C	1	a0002c0004t0001g0255 a0002c0004t0001g0255	1	NA18969.hp2 NA18969.hp2	intron_variant	MODIFIER	c.1534+80delT c.1534+80delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061417
chrX:124061743	C C	CT CT	16	a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0055 others(13): Show a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0055 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0074 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0155 a0001c0001t0001g0160 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0267 a0001c0001t0001g0275	16	HG01106.hp1 HG01167.hp1 HG01496.hp2 others(13): Show HG01106.hp1 HG01167.hp1 HG01496.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02615.hp1 HG02630.hp2 HG02965.hp1 HG03098.hp1 HG03486.hp2 NA18949.hp2 NA18966.hp1 NA19081.hp2 NA20300.hp2 NA20905.hp1	splice_acceptor_variant&intron_variant	HIGH	c.1535-3dupT c.1535-3dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	C C	CTT CTT	21	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(18): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0091 a0001c0001t0001g0138 a0001c0001t0001g0169 a0001c0001t0001g0178 a0001c0001t0002g0018 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0039 a0001c0001t0002g0041 a0001c0001t0002g0044 a0001c0001t0002g0049 a0001c0003t0001g0008	21	HG00140.hp1 HG00735.hp2 HG01257.hp2 others(18): Show HG00140.hp1 HG00735.hp2 HG01257.hp2 HG01884.hp2 HG01993.hp1 HG02056.hp1 HG02148.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02896.hp2 HG03471.hp1 HG03540.hp1 HG03669.hp1 HG03669.hp2 NA18906.hp2 NA18990.hp1 NA19082.hp1 NA20129.hp2	splice_acceptor_variant&intron_variant	HIGH	c.1535-4_1535-3dupTT c.1535-4_1535-3dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	C C	CTTT CTTT	40	a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 others(37): Show a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0071 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0002g0011 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0030 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0040 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	40	HG00280.hp1 HG00438.hp1 HG00597.hp1 others(37): Show HG00280.hp1 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG01123.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01952.hp1 HG02080.hp2 HG02132.hp1 HG02273.hp2 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02897.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 NA18522.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18983.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1 NA20805.hp1	splice_acceptor_variant&intron_variant	HIGH	c.1535-5_1535-3dupTT others(1): Show c.1535-5_1535-3dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	C C	CTTTT CTTTT	5	a0001c0001t0002g0028 a0001c0001t0002g0042 a0001c0001t0002g0050 others(2): Show a0001c0001t0002g0028 a0001c0001t0002g0042 a0001c0001t0002g0050 a0001c0001t0002g0062 a0001c0001t0002g0070	5	HG00558.hp1 HG01175.hp2 HG03942.hp1 others(2): Show HG00558.hp1 HG01175.hp2 HG03942.hp1 HG04115.hp1 NA18979.hp1	splice_acceptor_variant&intron_variant	HIGH	c.1535-6_1535-3dupTT others(2): Show c.1535-6_1535-3dupTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	CT CT	C C	75	a0001c0001t0001g0005 a0001c0001t0001g0066 a0001c0001t0001g0072 others(72): Show a0001c0001t0001g0005 a0001c0001t0001g0066 a0001c0001t0001g0072 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0113 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0008g0001 a0001c0001t0010g0164 a0001c0002t0001g0069 a0003c0006t0001g0226	75	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(72): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01496.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02135.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02615.hp2 HG02698.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03139.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18968.hp1 NA18970.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19043.hp1 NA19055.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	splice_region_variant&intron_variant	LOW	c.1535-3delT c.1535-3delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	CTT CTT	C C	5	a0001c0001t0001g0077 a0001c0001t0001g0254 a0001c0001t0001g0266 others(2): Show a0001c0001t0001g0077 a0001c0001t0001g0254 a0001c0001t0001g0266 a0001c0001t0002g0222 a0002c0004t0001g0255	5	HG02109.hp2 HG02683.hp1 HG02717.hp1 others(2): Show HG02109.hp2 HG02683.hp1 HG02717.hp1 NA18969.hp2 NA19058.hp1	splice_region_variant&intron_variant	LOW	c.1535-4_1535-3delTT c.1535-4_1535-3delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	CTTTTT CTTTTT	C C	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	HG01099.hp1 HG01099.hp1	splice_region_variant&intron_variant	LOW	c.1535-7_1535-3delTT others(3): Show c.1535-7_1535-3delTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124061743	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	splice_region_variant&intron_variant	LOW	c.1535-12_1535-3delT others(9): Show c.1535-12_1535-3delTTTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	16/34	INFO_REALIGN_3_PRIME	chrX	124061743
chrX:124062578	T T	TTA TTA	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.1639-317_1639-316d others(4): Show c.1639-317_1639-316dupTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/34	INFO_REALIGN_3_PRIME	chrX	124062578
chrX:124062690	A A	AT AT	2	a0001c0001t0002g0011 a0001c0003t0001g0008 a0001c0001t0002g0011 a0001c0003t0001g0008	2	HG03471.hp1 NA19087.hp2 HG03471.hp1 NA19087.hp2	intron_variant	MODIFIER	c.1639-203dupT c.1639-203dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/34	INFO_REALIGN_3_PRIME	chrX	124062690
chrX:124062690	AT AT	A A	1	a0002c0004t0001g0255 a0002c0004t0001g0255	1	NA18969.hp2 NA18969.hp2	intron_variant	MODIFIER	c.1639-203delT c.1639-203delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/34	INFO_REALIGN_3_PRIME	chrX	124062690
chrX:124062791	C C	T T	1	a0001c0001t0001g0147 a0001c0001t0001g0147	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.1639-111C>T c.1639-111C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	17/34		chrX	124062791
chrX:124063083	T T	C C	2	a0001c0001t0002g0040 a0001c0001t0002g0057 a0001c0001t0002g0040 a0001c0001t0002g0057	2	HG02080.hp2 HG02132.hp1 HG02080.hp2 HG02132.hp1	intron_variant	MODIFIER	c.1732-33T>C c.1732-33T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	18/34		chrX	124063083
chrX:124063222	T T	TA TA	1	a0001c0001t0001g0224 a0001c0001t0001g0224	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1821+25dupA c.1821+25dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34	INFO_REALIGN_3_PRIME	chrX	124063222
chrX:124063390	CA CA	C C	1	a0002c0004t0001g0255 a0002c0004t0001g0255	1	NA18969.hp2 NA18969.hp2	intron_variant	MODIFIER	c.1821+186delA c.1821+186delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34		chrX	124063390
chrX:124063457	G G	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.1821+252G>A c.1821+252G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34		chrX	124063457
chrX:124063495	G G	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1821+290G>A c.1821+290G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34		chrX	124063495
chrX:124063687	G G	C C	1	a0001c0001t0001g0274 a0001c0001t0001g0274	1	HG00558.hp2 HG00558.hp2	intron_variant	MODIFIER	c.1822-161G>C c.1822-161G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34		chrX	124063687
chrX:124063707	T T	C C	107	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(104): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	107	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(104): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1822-141T>C c.1822-141T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	19/34		chrX	124063707
chrX:124064128	T T	G G	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.2025+77T>G c.2025+77T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064128
chrX:124064296	A A	G G	1	a0001c0001t0002g0018 a0001c0001t0002g0018	1	HG02148.hp2 HG02148.hp2	intron_variant	MODIFIER	c.2025+245A>G c.2025+245A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064296
chrX:124064411	G G	GT GT	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2025+364dupT c.2025+364dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34	INFO_REALIGN_3_PRIME	chrX	124064411
chrX:124064444	G G	GT GT	5	a0001c0001t0001g0261 a0001c0001t0002g0050 a0001c0001t0002g0136 others(2): Show a0001c0001t0001g0261 a0001c0001t0002g0050 a0001c0001t0002g0136 a0001c0001t0010g0164 a0001c0003t0001g0008	5	HG02074.hp1 HG02683.hp2 HG03471.hp1 others(2): Show HG02074.hp1 HG02683.hp2 HG03471.hp1 NA18979.hp1 NA20129.hp1	intron_variant	MODIFIER	c.2025+409dupT c.2025+409dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34	INFO_REALIGN_3_PRIME	chrX	124064444
chrX:124064618	A A	AC AC	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2025+567_2025+568i others(3): Show c.2025+567_2025+568insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064618
chrX:124064724	G G	A A	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.2025+673G>A c.2025+673G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064724
chrX:124064860	ACAC ACAC	A A	1	a0001c0001t0001g0184 a0001c0001t0001g0184	1	NA18999.hp1 NA18999.hp1	intron_variant	MODIFIER	c.2025+810_2025+812d others(5): Show c.2025+810_2025+812delCAC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064860
chrX:124064914	C C	A A	261	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(258): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	261	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(258): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2025+863C>A c.2025+863C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064914
chrX:124064988	A A	G G	1	a0001c0001t0001g0186 a0001c0001t0001g0186	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.2026-888A>G c.2026-888A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124064988
chrX:124065029	T T	TC TC	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2026-847_2026-846i others(3): Show c.2026-847_2026-846insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124065029
chrX:124065159	T T	G G	2	a0001c0001t0001g0118 a0001c0001t0001g0180 a0001c0001t0001g0118 a0001c0001t0001g0180	2	HG03540.hp2 NA18959.hp1 HG03540.hp2 NA18959.hp1	intron_variant	MODIFIER	c.2026-717T>G c.2026-717T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124065159
chrX:124065171	ACTCTT ACTCTT	A A	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.2026-704_2026-700d others(7): Show c.2026-704_2026-700delCTCTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124065171
chrX:124065295	C C	CA CA	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2026-579dupA c.2026-579dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34	INFO_REALIGN_3_PRIME	chrX	124065295
chrX:124065494	GAT GAT	G G	1	a0001c0001t0001g0202 a0001c0001t0001g0202	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.2026-377_2026-376d others(4): Show c.2026-377_2026-376delAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34	INFO_REALIGN_3_PRIME	chrX	124065494
chrX:124065501	G G	GT GT	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2026-372dupT c.2026-372dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34	INFO_REALIGN_3_PRIME	chrX	124065501
chrX:124065516	A A	AT AT	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.2026-356dupT c.2026-356dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34	INFO_REALIGN_3_PRIME	chrX	124065516
chrX:124065547	T T	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2026-329T>C c.2026-329T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124065547
chrX:124065695	C C	CA CA	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2026-181_2026-180i others(3): Show c.2026-181_2026-180insA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124065695
chrX:124065826	C C	G G	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.2026-50C>G c.2026-50C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	20/34		chrX	124065826
chrX:124066049	T T	TG TG	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2096+108dupG c.2096+108dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34	INFO_REALIGN_3_PRIME	chrX	124066049
chrX:124066143	A A	AT AT	101	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(98): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0056 a0001c0001t0001g0066 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165	101	HG00280.hp1 HG00558.hp2 HG00597.hp2 others(98): Show HG00280.hp1 HG00558.hp2 HG00597.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01891.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02109.hp1 HG02135.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02615.hp1 HG02622.hp2 HG02647.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02897.hp1 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03688.hp1 NA18522.hp1 NA18612.hp1 NA18940.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1	splice_region_variant&intron_variant	LOW	c.2097-5dupT c.2097-5dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34	INFO_REALIGN_3_PRIME	chrX	124066143
chrX:124066143	A A	ATT ATT	17	a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0076 others(14): Show a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0091 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0114 a0001c0001t0001g0126 a0001c0001t0001g0128 a0001c0001t0001g0137 a0001c0001t0001g0149 a0001c0001t0001g0163 a0001c0001t0002g0136 a0001c0003t0001g0078	17	HG00639.hp1 HG01361.hp2 HG01496.hp2 others(14): Show HG00639.hp1 HG01361.hp2 HG01496.hp2 HG02148.hp1 HG02602.hp1 HG02683.hp2 HG02886.hp1 HG03579.hp1 HG03669.hp1 HG04184.hp2 HG04228.hp1 NA18906.hp2 NA18994.hp1 NA18995.hp1 NA19062.hp1 NA19087.hp1 homoSapiens_chm13v2.hp1	splice_region_variant&intron_variant	LOW	c.2097-6_2097-5dupTT c.2097-6_2097-5dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34	INFO_REALIGN_3_PRIME	chrX	124066143
chrX:124066143	AT AT	A A	53	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(50): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0190 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0215 a0001c0001t0001g0248 a0001c0001t0001g0251 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0057 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0069 a0001c0003t0001g0008 a0002c0004t0001g0255	53	HG00140.hp1 HG00597.hp1 HG00609.hp1 others(50): Show HG00140.hp1 HG00597.hp1 HG00609.hp1 HG01175.hp1 HG01257.hp2 HG01346.hp1 HG01361.hp1 HG01496.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02257.hp2 HG02273.hp2 HG02451.hp1 HG02572.hp1 HG02622.hp1 HG02683.hp1 HG02698.hp1 HG03017.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18969.hp1 NA18969.hp2 NA18975.hp2 NA18981.hp2 NA18983.hp1 NA18990.hp1 NA18999.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19077.hp2 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	splice_region_variant&intron_variant	LOW	c.2097-5delT c.2097-5delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34	INFO_REALIGN_3_PRIME	chrX	124066143
chrX:124066143	ATT ATT	A A	79	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0071 others(76): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0071 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0002g0002 a0001c0001t0002g0030 a0001c0001t0002g0047 a0001c0001t0002g0070 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0004c0005t0007g0083	79	HG00438.hp2 HG00558.hp1 HG00621.hp1 others(76): Show HG00438.hp2 HG00558.hp1 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01515.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02165.hp1 HG02258.hp1 HG02486.hp1 HG02559.hp1 HG02615.hp2 HG02630.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03486.hp1 HG03491.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18970.hp1 NA18974.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA21309.hp2	splice_region_variant&intron_variant	LOW	c.2097-6_2097-5delTT c.2097-6_2097-5delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34	INFO_REALIGN_3_PRIME	chrX	124066143
chrX:124066143	ATTT ATTT	A A	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	splice_region_variant&intron_variant	LOW	c.2097-7_2097-5delTT others(1): Show c.2097-7_2097-5delTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	21/34	INFO_REALIGN_3_PRIME	chrX	124066143
chrX:124066583	G G	GGA GGA	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2265+151_2265+152d others(4): Show c.2265+151_2265+152dupAG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124066583
chrX:124066632	ATTG ATTG	A A	130	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 others(127): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	130	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(127): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00735.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02273.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19011.hp2 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2265+202_2265+204d others(5): Show c.2265+202_2265+204delGTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124066632
chrX:124066805	T T	C C	1	a0001c0001t0001g0265 a0001c0001t0001g0265	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.2265+369T>C c.2265+369T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124066805
chrX:124066813	ATC ATC	A A	131	a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 others(128): Show a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	131	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(128): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00735.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp1 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02273.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18952.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18999.hp1 NA19000.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19011.hp2 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2265+383_2265+384d others(4): Show c.2265+383_2265+384delCT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124066813
chrX:124066893	A A	AT AT	1	a0003c0006t0001g0226 a0003c0006t0001g0226	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2265+458dupT c.2265+458dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124066893
chrX:124067010	G G	A A	273	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(270): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	273	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(270): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2265+574G>A c.2265+574G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067010
chrX:124067039	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.2265+603C>T c.2265+603C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067039
chrX:124067055	TCA TCA	T T	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.2265+624_2265+625d others(4): Show c.2265+624_2265+625delCA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124067055
chrX:124067207	C C	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2265+771C>A c.2265+771C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067207
chrX:124067265	G G	GC GC	4	a0001c0001t0001g0052 a0001c0001t0001g0203 a0001c0001t0002g0011 others(1): Show a0001c0001t0001g0052 a0001c0001t0001g0203 a0001c0001t0002g0011 a0001c0001t0002g0050	4	HG02572.hp1 HG03688.hp1 NA18979.hp1 others(1): Show HG02572.hp1 HG03688.hp1 NA18979.hp1 NA19087.hp2	intron_variant	MODIFIER	c.2265+836dupC c.2265+836dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124067265
chrX:124067321	T T	C C	2	a0001c0001t0001g0084 a0001c0001t0002g0151 a0001c0001t0001g0084 a0001c0001t0002g0151	2	HG01891.hp1 HG02886.hp2 HG01891.hp1 HG02886.hp2	intron_variant	MODIFIER	c.2265+885T>C c.2265+885T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067321
chrX:124067373	A A	G G	1	a0001c0001t0001g0138 a0001c0001t0001g0138	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.2265+937A>G c.2265+937A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067373
chrX:124067404	A A	G G	61	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(58): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008 a0001c0003t0001g0078	61	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(58): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02886.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.2265+968A>G c.2265+968A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067404
chrX:124067685	C C	A A	275	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(272): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	275	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(272): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2266-879C>A c.2266-879C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124067685
chrX:124068034	C C	CA CA	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.2266-518dupA c.2266-518dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124068034
chrX:124068034	CA CA	C C	48	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(45): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0159 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0009g0139	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02818.hp2 HG02976.hp2 HG03490.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.2266-518delA c.2266-518delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124068034
chrX:124068185	A A	C C	60	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(57): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	60	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(57): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.2266-379A>C c.2266-379A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124068185
chrX:124068224	C C	T T	6	a0001c0001t0001g0056 a0001c0001t0001g0096 a0001c0001t0001g0119 others(3): Show a0001c0001t0001g0056 a0001c0001t0001g0096 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0134 a0001c0001t0001g0145	6	HG01261.hp1 NA18947.hp2 NA18954.hp1 others(3): Show HG01261.hp1 NA18947.hp2 NA18954.hp1 NA18967.hp1 NA19003.hp2 NA19056.hp1	intron_variant	MODIFIER	c.2266-340C>T c.2266-340C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124068224
chrX:124068468	C C	CTATA CTATA	10	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(7): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0003t0001g0008	10	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(7): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03471.hp1 HG03486.hp1 NA20805.hp1	intron_variant	MODIFIER	c.2266-93_2266-92ins others(4): Show c.2266-93_2266-92insATAT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34	INFO_REALIGN_3_PRIME	chrX	124068468
chrX:124068506	A A	C C	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.2266-58A>C c.2266-58A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	23/34		chrX	124068506
chrX:124068920	G G	A A	1	a0001c0001t0002g0038 a0001c0001t0002g0038	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.2358+264G>A c.2358+264G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124068920
chrX:124069137	C C	T T	5	a0001c0001t0001g0191 a0001c0001t0001g0194 a0001c0001t0001g0199 others(2): Show a0001c0001t0001g0191 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0206	5	HG01884.hp1 HG02559.hp1 HG02895.hp1 others(2): Show HG01884.hp1 HG02559.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp2	intron_variant	MODIFIER	c.2358+481C>T c.2358+481C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124069137
chrX:124069182	C C	T T	1	a0001c0001t0001g0119 a0001c0001t0001g0119	1	HG01261.hp1 HG01261.hp1	intron_variant	MODIFIER	c.2358+526C>T c.2358+526C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124069182
chrX:124069222	C C	CATGTTCA others(23): Show CATGTTCAATTCTAATTCCCTAATTGAGAGG	1	a0001c0001t0001g0153 a0001c0001t0001g0153	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.2358+569_2358+598d others(32): Show c.2358+569_2358+598dupGTTCAATTCTAATTCCCTAATTGAGAGG AT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124069222
chrX:124069292	TG TG	T T	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.2358+639delG c.2358+639delG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124069292
chrX:124069398	G G	GT GT	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.2358+748dupT c.2358+748dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124069398
chrX:124069617	C C	CT CT	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.2358+968dupT c.2358+968dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124069617
chrX:124069833	CA CA	C C	2	a0001c0001t0001g0112 a0001c0001t0001g0153 a0001c0001t0001g0112 a0001c0001t0001g0153	2	NA18948.hp1 NA19067.hp1 NA18948.hp1 NA19067.hp1	intron_variant	MODIFIER	c.2358+1178delA c.2358+1178delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124069833
chrX:124070119	TC TC	T T	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.2359-1027delC c.2359-1027delC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124070119
chrX:124070332	C C	G G	1	a0001c0001t0001g0170 a0001c0001t0001g0170	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.2359-817C>G c.2359-817C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070332
chrX:124070564	A A	G G	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.2359-585A>G c.2359-585A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070564
chrX:124070588	G G	A A	1	a0001c0001t0001g0182 a0001c0001t0001g0182	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.2359-561G>A c.2359-561G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070588
chrX:124070636	G G	T T	68	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 others(65): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0177 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0209 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0007g0141 a0001c0001t0009g0139	68	HG00558.hp2 HG00639.hp1 HG00642.hp1 others(65): Show HG00558.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01517.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02109.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02965.hp1 HG03486.hp2 HG03540.hp2 HG03669.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18947.hp2 NA18950.hp2 NA18954.hp1 NA18959.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18975.hp1 NA18979.hp2 NA18981.hp1 NA18991.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19012.hp1 NA19056.hp1 NA19066.hp1 NA19068.hp1 NA19079.hp1 NA19087.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2359-513G>T c.2359-513G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070636
chrX:124070799	A A	G G	1	a0001c0001t0010g0164 a0001c0001t0010g0164	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.2359-350A>G c.2359-350A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070799
chrX:124070820	G G	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2359-329G>C c.2359-329G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070820
chrX:124070898	A A	T T	1	a0001c0001t0002g0059 a0001c0001t0002g0059	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.2359-251A>T c.2359-251A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070898
chrX:124070921	T T	TA TA	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.2359-227dupA c.2359-227dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124070921
chrX:124070983	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2359-166C>T c.2359-166C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124070983
chrX:124071086	G G	A A	1	a0001c0001t0001g0180 a0001c0001t0001g0180	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2359-63G>A c.2359-63G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34		chrX	124071086
chrX:124071128	CT CT	C C	4	a0001c0001t0001g0087 a0001c0001t0001g0101 a0001c0001t0002g0041 others(1): Show a0001c0001t0001g0087 a0001c0001t0001g0101 a0001c0001t0002g0041 a0001c0001t0004g0003	4	HG01257.hp2 HG01943.hp1 HG02976.hp1 others(1): Show HG01257.hp2 HG01943.hp1 HG02976.hp1 NA18964.hp1	splice_region_variant&intron_variant	LOW	c.2359-7delT c.2359-7delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	24/34	INFO_REALIGN_3_PRIME	chrX	124071128
chrX:124071540	A A	G G	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2533+217A>G c.2533+217A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124071540
chrX:124071628	T T	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2533+305T>C c.2533+305T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124071628
chrX:124071745	C C	T T	4	a0001c0001t0002g0011 a0001c0001t0002g0037 a0001c0001t0002g0040 others(1): Show a0001c0001t0002g0011 a0001c0001t0002g0037 a0001c0001t0002g0040 a0001c0001t0002g0057	4	HG00609.hp1 HG02080.hp2 HG02132.hp1 others(1): Show HG00609.hp1 HG02080.hp2 HG02132.hp1 NA19087.hp2	intron_variant	MODIFIER	c.2533+422C>T c.2533+422C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124071745
chrX:124071940	A A	G G	84	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(81): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	84	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(81): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2533+617A>G c.2533+617A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124071940
chrX:124072024	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2533+701A>G c.2533+701A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072024
chrX:124072076	T T	C C	2	a0001c0001t0001g0230 a0001c0001t0001g0235 a0001c0001t0001g0230 a0001c0001t0001g0235	2	HG03654.hp1 HG04184.hp1 HG03654.hp1 HG04184.hp1	intron_variant	MODIFIER	c.2533+753T>C c.2533+753T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072076
chrX:124072256	C C	T T	3	a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169	3	HG02647.hp1 HG02896.hp2 HG02897.hp1 HG02647.hp1 HG02896.hp2 HG02897.hp1	intron_variant	MODIFIER	c.2533+933C>T c.2533+933C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072256
chrX:124072257	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2533+934G>A c.2533+934G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072257
chrX:124072393	A A	C C	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.2533+1070A>C c.2533+1070A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072393
chrX:124072450	C C	G G	2	a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0002g0030 a0001c0001t0002g0035	2	HG03491.hp1 HG03492.hp1 HG03491.hp1 HG03492.hp1	intron_variant	MODIFIER	c.2533+1127C>G c.2533+1127C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072450
chrX:124072501	T T	A A	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.2533+1178T>A c.2533+1178T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072501
chrX:124072682	G G	GC GC	1	a0001c0001t0001g0238 a0001c0001t0001g0238	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.2533+1359_2533+136 others(5): Show c.2533+1359_2533+1360insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072682
chrX:124072683	T T	G G	101	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(98): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165	101	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(98): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02809.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2533+1360T>G c.2533+1360T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072683
chrX:124072691	G G	GT GT	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.2533+1370dupT c.2533+1370dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072691
chrX:124072691	G G	GTTGT GTTGT	73	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(70): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0091 a0001c0001t0001g0152 a0001c0001t0001g0190 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0219 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0254 a0001c0001t0001g0268 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	73	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(70): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00735.hp2 HG01081.hp1 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01361.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02055.hp1 HG02056.hp1 HG02080.hp2 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02257.hp2 HG02273.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp2 HG02735.hp1 HG02922.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18906.hp2 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2533+1391_2533+139 others(8): Show c.2533+1391_2533+1394dupGTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072691
chrX:124072691	GTTGTTTG others(1): Show GTTGTTTGT	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2533+1387_2533+139 others(12): Show c.2533+1387_2533+1394delGTTTGTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072691
chrX:124072873	CT CT	C C	1	a0001c0001t0001g0184 a0001c0001t0001g0184	1	NA18999.hp1 NA18999.hp1	intron_variant	MODIFIER	c.2533+1560delT c.2533+1560delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072873
chrX:124072880	T T	C C	9	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(6): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0089 a0001c0001t0001g0101 a0001c0001t0001g0113 a0001c0001t0001g0157 a0001c0001t0001g0170	9	HG00597.hp2 HG02135.hp1 HG02451.hp1 others(6): Show HG00597.hp2 HG02135.hp1 HG02451.hp1 HG02622.hp1 HG03540.hp1 NA18964.hp1 NA18977.hp1 NA19070.hp1 NA20129.hp2	intron_variant	MODIFIER	c.2533+1557T>C c.2533+1557T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072880
chrX:124072880	TTTTC TTTTC	T T	4	a0001c0001t0001g0088 a0001c0001t0001g0121 a0001c0001t0001g0122 others(1): Show a0001c0001t0001g0088 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0154	4	HG02027.hp1 NA18950.hp2 NA18968.hp2 others(1): Show HG02027.hp1 NA18950.hp2 NA18968.hp2 NA19087.hp1	intron_variant	MODIFIER	c.2533+1581_2533+158 others(8): Show c.2533+1581_2533+1584delCTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072880
chrX:124072901	TTTC TTTC	T T	2	a0001c0001t0001g0231 a0001c0001t0001g0256 a0001c0001t0001g0231 a0001c0001t0001g0256	2	HG01257.hp1 HG01258.hp1 HG01257.hp1 HG01258.hp1	intron_variant	MODIFIER	c.2533+1581_2533+158 others(7): Show c.2533+1581_2533+1583delCTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072901
chrX:124072904	C C	CT CT	12	a0001c0001t0001g0056 a0001c0001t0001g0079 a0001c0001t0001g0113 others(9): Show a0001c0001t0001g0056 a0001c0001t0001g0079 a0001c0001t0001g0113 a0001c0001t0001g0145 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0215 a0001c0001t0001g0223 a0001c0001t0001g0228 a0001c0001t0001g0236 a0001c0001t0002g0222 a0001c0001t0002g0271	12	HG01123.hp1 HG01175.hp1 HG01346.hp2 others(9): Show HG01123.hp1 HG01175.hp1 HG01346.hp2 HG02083.hp1 HG02135.hp1 HG02683.hp1 HG02738.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp2 NA18967.hp1 NA19067.hp1	intron_variant	MODIFIER	c.2533+1601dupT c.2533+1601dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072904
chrX:124072904	C C	CTTT CTTT	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2533+1599_2533+160 others(7): Show c.2533+1599_2533+1601dupTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072904
chrX:124072904	CT CT	C C	23	a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0065 others(20): Show a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0065 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0158 a0001c0001t0001g0162 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0190 a0001c0001t0001g0241 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	23	HG01243.hp1 HG01496.hp1 HG01884.hp2 others(20): Show HG01243.hp1 HG01496.hp1 HG01884.hp2 HG01952.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02630.hp2 HG02647.hp1 HG02818.hp1 HG02818.hp2 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03225.hp1 HG03704.hp1 NA18522.hp1 NA18906.hp1 NA19089.hp1 NA20129.hp2 NA20300.hp2	intron_variant	MODIFIER	c.2533+1601delT c.2533+1601delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072904
chrX:124072904	CTT CTT	C C	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0066 a0001c0001t0001g0166 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG02809.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19043.hp1 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.2533+1600_2533+160 others(6): Show c.2533+1600_2533+1601delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072904
chrX:124072905	T T	TTTC TTTC	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.2533+1584_2533+158 others(7): Show c.2533+1584_2533+1585insCTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072905
chrX:124072905	T T	TTTCTTTC TTTCTTTC	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2533+1584_2533+158 others(11): Show c.2533+1584_2533+1585insCTTTCTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072905
chrX:124072906	T T	TTC TTC	3	a0001c0001t0001g0071 a0001c0001t0001g0091 a0001c0001t0002g0029 a0001c0001t0001g0071 a0001c0001t0001g0091 a0001c0001t0002g0029	3	HG03209.hp1 HG03669.hp2 NA18906.hp2 HG03209.hp1 HG03669.hp2 NA18906.hp2	intron_variant	MODIFIER	c.2533+1584_2533+158 others(6): Show c.2533+1584_2533+1585insCT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124072906
chrX:124072907	T T	TC TC	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.2533+1584_2533+158 others(5): Show c.2533+1584_2533+1585insC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072907
chrX:124072960	G G	T T	3	a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0140 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0140	3	HG01074.hp1 HG01256.hp1 NA20752.hp1 HG01074.hp1 HG01256.hp1 NA20752.hp1	intron_variant	MODIFIER	c.2533+1637G>T c.2533+1637G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072960
chrX:124072975	C C	T T	1	a0001c0001t0001g0133 a0001c0001t0001g0133	1	HG01109.hp1 HG01109.hp1	intron_variant	MODIFIER	c.2533+1652C>T c.2533+1652C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124072975
chrX:124073031	CA CA	C C	4	a0001c0001t0001g0088 a0001c0001t0001g0121 a0001c0001t0001g0122 others(1): Show a0001c0001t0001g0088 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0154	4	HG02027.hp1 NA18950.hp2 NA18968.hp2 others(1): Show HG02027.hp1 NA18950.hp2 NA18968.hp2 NA19087.hp1	intron_variant	MODIFIER	c.2533+1709delA c.2533+1709delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073031
chrX:124073040	C C	T T	1	a0001c0001t0001g0129 a0001c0001t0001g0129	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.2533+1717C>T c.2533+1717C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073040
chrX:124073148	C C	T T	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.2533+1825C>T c.2533+1825C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073148
chrX:124073154	A A	T T	263	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(260): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	263	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(260): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2533+1831A>T c.2533+1831A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073154
chrX:124073192	A A	G G	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2533+1869A>G c.2533+1869A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073192
chrX:124073378	G G	C C	1	a0001c0001t0001g0189 a0001c0001t0001g0189	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.2533+2055G>C c.2533+2055G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073378
chrX:124073437	T T	TG TG	1	a0001c0001t0001g0238 a0001c0001t0001g0238	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.2533+2115dupG c.2533+2115dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124073437
chrX:124073566	C C	T T	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.2533+2243C>T c.2533+2243C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073566
chrX:124073611	C C	G G	1	a0001c0001t0002g0002 a0001c0001t0002g0002	1	HG02896.hp1 HG02896.hp1	intron_variant	MODIFIER	c.2533+2288C>G c.2533+2288C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073611
chrX:124073693	G G	A A	2	a0001c0001t0001g0123 a0001c0001t0001g0140 a0001c0001t0001g0123 a0001c0001t0001g0140	2	HG01074.hp1 NA20752.hp1 HG01074.hp1 NA20752.hp1	intron_variant	MODIFIER	c.2533+2370G>A c.2533+2370G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073693
chrX:124073982	T T	C C	3	a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0244 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0244	3	HG02055.hp1 HG02922.hp1 NA19240.hp2 HG02055.hp1 HG02922.hp1 NA19240.hp2	intron_variant	MODIFIER	c.2534-2350T>C c.2534-2350T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124073982
chrX:124074069	A A	G G	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.2534-2263A>G c.2534-2263A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074069
chrX:124074105	G G	C C	1	a0001c0001t0001g0212 a0001c0001t0001g0212	1	NA18986.hp1 NA18986.hp1	intron_variant	MODIFIER	c.2534-2227G>C c.2534-2227G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074105
chrX:124074393	C C	CA CA	1	a0001c0001t0001g0205 a0001c0001t0001g0205	1	NA18943.hp1 NA18943.hp1	intron_variant	MODIFIER	c.2534-1936dupA c.2534-1936dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124074393
chrX:124074581	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2534-1751A>G c.2534-1751A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074581
chrX:124074714	T T	C C	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.2534-1618T>C c.2534-1618T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074714
chrX:124074832	T T	C C	1	a0001c0001t0001g0161 a0001c0001t0001g0161	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.2534-1500T>C c.2534-1500T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074832
chrX:124074880	G G	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2534-1452G>A c.2534-1452G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074880
chrX:124074900	A A	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2534-1432A>C c.2534-1432A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124074900
chrX:124075368	G G	A A	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2534-964G>A c.2534-964G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124075368
chrX:124075396	C C	T T	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2534-936C>T c.2534-936C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124075396
chrX:124075591	T T	A A	5	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0004g0003	5	HG01884.hp2 HG02630.hp2 HG02976.hp1 others(2): Show HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 NA20300.hp2	intron_variant	MODIFIER	c.2534-741T>A c.2534-741T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34		chrX	124075591
chrX:124075656	C C	CT CT	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.2534-666dupT c.2534-666dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124075656
chrX:124075656	CT CT	C C	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.2534-666delT c.2534-666delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	25/34	INFO_REALIGN_3_PRIME	chrX	124075656
chrX:124076795	A A	C C	1	a0001c0001t0001g0197 a0001c0001t0001g0197	1	NA19090.hp2 NA19090.hp2	intron_variant	MODIFIER	c.2673+324A>C c.2673+324A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	26/34		chrX	124076795
chrX:124077168	C C	T T	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2673+697C>T c.2673+697C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	26/34		chrX	124077168
chrX:124077250	G G	GT GT	13	a0001c0001t0001g0012 a0001c0001t0001g0055 a0001c0001t0001g0095 others(10): Show a0001c0001t0001g0012 a0001c0001t0001g0055 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0109 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0156 a0001c0001t0001g0163 a0001c0001t0001g0176 a0001c0001t0001g0182 a0001c0001t0001g0267 a0001c0001t0008g0001	13	HG01496.hp2 HG01928.hp1 HG02630.hp1 others(10): Show HG01496.hp2 HG01928.hp1 HG02630.hp1 NA18957.hp1 NA18965.hp1 NA18971.hp1 NA18994.hp1 NA19007.hp1 NA19009.hp1 NA19062.hp1 NA19081.hp2 NA19085.hp1 NA19088.hp1	intron_variant	MODIFIER	c.2674-694dupT c.2674-694dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	26/34	INFO_REALIGN_3_PRIME	chrX	124077250
chrX:124077250	GT GT	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2674-694delT c.2674-694delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	26/34	INFO_REALIGN_3_PRIME	chrX	124077250
chrX:124077517	A A	G G	2	a0001c0001t0001g0230 a0001c0001t0001g0235 a0001c0001t0001g0230 a0001c0001t0001g0235	2	HG03654.hp1 HG04184.hp1 HG03654.hp1 HG04184.hp1	intron_variant	MODIFIER	c.2674-440A>G c.2674-440A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	26/34		chrX	124077517
chrX:124077822	T T	A A	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.2674-135T>A c.2674-135T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	26/34		chrX	124077822
chrX:124078349	CTT CTT	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2775+294_2775+295d others(4): Show c.2775+294_2775+295delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34	INFO_REALIGN_3_PRIME	chrX	124078349
chrX:124078577	G G	A A	192	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(189): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	192	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(189): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2775+519G>A c.2775+519G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124078577
chrX:124078798	G G	A A	1	a0001c0001t0001g0264 a0001c0001t0001g0264	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.2775+740G>A c.2775+740G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124078798
chrX:124078851	C C	T T	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.2775+793C>T c.2775+793C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124078851
chrX:124078876	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.2775+818C>T c.2775+818C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124078876
chrX:124079133	C C	CT CT	3	a0001c0001t0001g0224 a0001c0001t0002g0045 a0001c0001t0002g0198 a0001c0001t0001g0224 a0001c0001t0002g0045 a0001c0001t0002g0198	3	NA18974.hp1 NA19006.hp1 NA19083.hp1 NA18974.hp1 NA19006.hp1 NA19083.hp1	intron_variant	MODIFIER	c.2775+1087dupT c.2775+1087dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34	INFO_REALIGN_3_PRIME	chrX	124079133
chrX:124079141	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.2775+1083T>C c.2775+1083T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124079141
chrX:124079379	T T	G G	5	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(2): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002	5	HG02257.hp2 HG02258.hp1 HG02723.hp1 others(2): Show HG02257.hp2 HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.2775+1321T>G c.2775+1321T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124079379
chrX:124079432	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.2775+1374C>T c.2775+1374C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124079432
chrX:124079777	C C	T T	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.2776-1603C>T c.2776-1603C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124079777
chrX:124079933	CT CT	C C	50	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(47): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0166 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	50	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(47): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG02809.hp1 HG03209.hp1 HG03471.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.2776-1435delT c.2776-1435delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34	INFO_REALIGN_3_PRIME	chrX	124079933
chrX:124080105	ATACT ATACT	A A	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.2776-1269_2776-126 others(8): Show c.2776-1269_2776-1266delACTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34	INFO_REALIGN_3_PRIME	chrX	124080105
chrX:124080206	T T	C C	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2776-1174T>C c.2776-1174T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124080206
chrX:124080391	T T	C C	1	a0001c0001t0001g0113 a0001c0001t0001g0113	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.2776-989T>C c.2776-989T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124080391
chrX:124080603	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.2776-777G>A c.2776-777G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124080603
chrX:124080741	A A	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.2776-639A>G c.2776-639A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124080741
chrX:124080865	G G	GT GT	2	a0001c0001t0002g0030 a0001c0001t0002g0035 a0001c0001t0002g0030 a0001c0001t0002g0035	2	HG03491.hp1 HG03492.hp1 HG03491.hp1 HG03492.hp1	intron_variant	MODIFIER	c.2776-508dupT c.2776-508dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34	INFO_REALIGN_3_PRIME	chrX	124080865
chrX:124081061	G G	A A	3	a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	3	HG01346.hp1 HG02273.hp2 NA20300.hp1 HG01346.hp1 HG02273.hp2 NA20300.hp1	intron_variant	MODIFIER	c.2776-319G>A c.2776-319G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124081061
chrX:124081097	T T	TC TC	193	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(190): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	193	HG00438.hp2 HG00558.hp2 HG00597.hp2 others(190): Show HG00438.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2776-279dupC c.2776-279dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34	INFO_REALIGN_3_PRIME	chrX	124081097
chrX:124081097	T T	TTC TTC	1	a0001c0001t0001g0273 a0001c0001t0001g0273	1	NA18975.hp1 NA18975.hp1	intron_variant	MODIFIER	c.2776-283_2776-282i others(4): Show c.2776-283_2776-282insTC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	27/34		chrX	124081097
chrX:124081689	A A	G G	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.2924+161A>G c.2924+161A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124081689
chrX:124081721	C C	T T	1	a0001c0001t0001g0261 a0001c0001t0001g0261	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.2924+193C>T c.2924+193C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124081721
chrX:124082147	CAGAT CAGAT	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.2924+623_2924+626d others(6): Show c.2924+623_2924+626delTAGA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34	INFO_REALIGN_3_PRIME	chrX	124082147
chrX:124082267	A A	G G	1	a0001c0001t0003g0106 a0001c0001t0003g0106	1	NA19240.hp2 NA19240.hp2	intron_variant	MODIFIER	c.2924+739A>G c.2924+739A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124082267
chrX:124082474	G G	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.2924+946G>C c.2924+946G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124082474
chrX:124082983	G G	T T	1	a0001c0001t0001g0150 a0001c0001t0001g0150	1	HG01993.hp2 HG01993.hp2	intron_variant	MODIFIER	c.2925-438G>T c.2925-438G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124082983
chrX:124083017	G G	A A	59	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(56): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0008	59	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(56): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01123.hp2 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.2925-404G>A c.2925-404G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124083017
chrX:124083206	T T	TTG TTG	113	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(110): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0186 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0003t0001g0078 a0001c0007t0001g0165 a0003c0006t0001g0226 a0004c0005t0007g0083	113	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(110): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2925-199_2925-198d others(4): Show c.2925-199_2925-198dupGT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34	INFO_REALIGN_3_PRIME	chrX	124083206
chrX:124083238	A A	G G	1	a0001c0001t0001g0194 a0001c0001t0001g0194	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2925-183A>G c.2925-183A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	28/34		chrX	124083238
chrX:124083560	G G	T T	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.3053+11G>T c.3053+11G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124083560
chrX:124083677	A A	G G	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.3053+128A>G c.3053+128A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124083677
chrX:124083928	G G	A A	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.3053+379G>A c.3053+379G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124083928
chrX:124084021	C C	A A	1	a0001c0001t0001g0133 a0001c0001t0001g0133	1	HG01109.hp1 HG01109.hp1	intron_variant	MODIFIER	c.3053+472C>A c.3053+472C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084021
chrX:124084149	C C	T T	1	a0001c0001t0002g0041 a0001c0001t0002g0041	1	HG01257.hp2 HG01257.hp2	intron_variant	MODIFIER	c.3053+600C>T c.3053+600C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084149
chrX:124084279	C C	T T	5	a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 others(2): Show a0001c0001t0002g0046 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051	5	NA18975.hp2 NA18979.hp1 NA19000.hp1 others(2): Show NA18975.hp2 NA18979.hp1 NA19000.hp1 NA19077.hp1 NA19082.hp1	intron_variant	MODIFIER	c.3053+730C>T c.3053+730C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084279
chrX:124084320	G G	C C	4	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	4	HG02451.hp1 HG02622.hp1 HG03540.hp1 others(1): Show HG02451.hp1 HG02622.hp1 HG03540.hp1 NA20129.hp2	intron_variant	MODIFIER	c.3053+771G>C c.3053+771G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084320
chrX:124084338	C C	CT CT	1	a0001c0001t0001g0239 a0001c0001t0001g0239	1	NA18964.hp2 NA18964.hp2	intron_variant	MODIFIER	c.3053+802dupT c.3053+802dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124084338
chrX:124084338	CT CT	C C	1	a0001c0001t0001g0135 a0001c0001t0001g0135	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.3053+802delT c.3053+802delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124084338
chrX:124084354	A A	T T	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.3053+805A>T c.3053+805A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084354
chrX:124084393	ACTGCAAA others(2): Show ACTGCAAACT	A A	42	a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 others(39): Show a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	42	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(39): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20300.hp1	intron_variant	MODIFIER	c.3053+849_3053+857d others(11): Show c.3053+849_3053+857delAAACTCTGC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124084393
chrX:124084544	G G	C C	262	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(259): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	262	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(259): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3053+995G>C c.3053+995G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084544
chrX:124084565	A A	C C	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.3053+1016A>C c.3053+1016A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084565
chrX:124084669	T T	G G	83	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(80): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	83	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(80): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.3053+1120T>G c.3053+1120T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084669
chrX:124084884	T T	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.3053+1335T>A c.3053+1335T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084884
chrX:124084958	A A	G G	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.3053+1409A>G c.3053+1409A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124084958
chrX:124085064	A A	G G	3	a0001c0001t0001g0080 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0080 a0001c0001t0001g0092 a0001c0001t0001g0093	3	HG00642.hp1 HG01192.hp1 HG02273.hp1 HG00642.hp1 HG01192.hp1 HG02273.hp1	intron_variant	MODIFIER	c.3054-1483A>G c.3054-1483A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085064
chrX:124085183	A A	G G	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.3054-1364A>G c.3054-1364A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085183
chrX:124085387	G G	A A	2	a0001c0001t0001g0055 a0001c0001t0001g0182 a0001c0001t0001g0055 a0001c0001t0001g0182	2	HG01496.hp2 HG01928.hp1 HG01496.hp2 HG01928.hp1	intron_variant	MODIFIER	c.3054-1160G>A c.3054-1160G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085387
chrX:124085556	A A	G G	3	a0001c0001t0001g0082 a0001c0001t0001g0181 a0001c0001t0001g0261 a0001c0001t0001g0082 a0001c0001t0001g0181 a0001c0001t0001g0261	3	HG02074.hp1 NA18612.hp1 NA18995.hp1 HG02074.hp1 NA18612.hp1 NA18995.hp1	intron_variant	MODIFIER	c.3054-991A>G c.3054-991A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085556
chrX:124085572	C C	T T	1	a0001c0001t0001g0110 a0001c0001t0001g0110	1	NA19079.hp1 NA19079.hp1	intron_variant	MODIFIER	c.3054-975C>T c.3054-975C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085572
chrX:124085593	G G	A A	1	a0001c0001t0001g0229 a0001c0001t0001g0229	1	NA18962.hp1 NA18962.hp1	intron_variant	MODIFIER	c.3054-954G>A c.3054-954G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085593
chrX:124085641	A A	G G	263	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(260): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	263	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(260): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3054-906A>G c.3054-906A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085641
chrX:124085655	A A	G G	4	a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0265 others(1): Show a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0265 a0001c0001t0001g0266	4	HG02071.hp1 NA18991.hp2 NA19058.hp1 others(1): Show HG02071.hp1 NA18991.hp2 NA19058.hp1 NA19081.hp1	intron_variant	MODIFIER	c.3054-892A>G c.3054-892A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085655
chrX:124085676	G G	A A	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.3054-871G>A c.3054-871G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085676
chrX:124085773	C C	CA CA	2	a0001c0001t0001g0068 a0001c0001t0001g0190 a0001c0001t0001g0068 a0001c0001t0001g0190	2	HG02257.hp2 HG03098.hp1 HG02257.hp2 HG03098.hp1	intron_variant	MODIFIER	c.3054-751dupA c.3054-751dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124085773
chrX:124085773	C C	CAA CAA	1	a0001c0002t0001g0069 a0001c0002t0001g0069	1	HG01496.hp1 HG01496.hp1	intron_variant	MODIFIER	c.3054-752_3054-751d others(4): Show c.3054-752_3054-751dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124085773
chrX:124085773	CA CA	C C	104	a0001c0001t0001g0006 a0001c0001t0001g0052 a0001c0001t0001g0074 others(101): Show a0001c0001t0001g0006 a0001c0001t0001g0052 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0105 a0001c0001t0001g0109 a0001c0001t0001g0113 a0001c0001t0001g0125 a0001c0001t0001g0138 a0001c0001t0001g0147 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0268 a0001c0001t0002g0028 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0151 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0002c0004t0001g0255 a0003c0006t0001g0226	104	HG00280.hp1 HG00597.hp1 HG00621.hp1 others(101): Show HG00280.hp1 HG00597.hp1 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp2 HG01257.hp1 HG01258.hp1 HG01361.hp1 HG01884.hp1 HG01891.hp1 HG01952.hp1 HG02015.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02257.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02647.hp1 HG02683.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp1 HG03486.hp2 HG03491.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18522.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18989.hp1 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19080.hp2 NA19081.hp1 NA19085.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.3054-751delA c.3054-751delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124085773
chrX:124085773	CAA CAA	C C	143	a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0012 others(140): Show a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0234 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0007t0001g0165 a0004c0005t0007g0083	143	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(140): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp2 HG00609.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01928.hp1 HG01934.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02451.hp1 HG02602.hp1 HG02622.hp1 HG02630.hp1 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02965.hp1 HG03130.hp1 HG03209.hp1 HG03239.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18960.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp1 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18988.hp1 NA18990.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19062.hp1 NA19064.hp2 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3054-752_3054-751d others(4): Show c.3054-752_3054-751delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124085773
chrX:124085773	CAAA CAAA	C C	2	a0001c0001t0001g0087 a0001c0001t0009g0139 a0001c0001t0001g0087 a0001c0001t0009g0139	2	HG01069.hp1 HG01943.hp1 HG01069.hp1 HG01943.hp1	intron_variant	MODIFIER	c.3054-753_3054-751d others(5): Show c.3054-753_3054-751delAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124085773
chrX:124085834	T T	C C	60	a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0105 others(57): Show a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0002c0004t0001g0255 a0003c0006t0001g0226	60	HG00438.hp2 HG00621.hp1 HG01123.hp1 others(57): Show HG00438.hp2 HG00621.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1	intron_variant	MODIFIER	c.3054-713T>C c.3054-713T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124085834
chrX:124086135	A A	G G	2	a0001c0001t0001g0094 a0001c0001t0001g0177 a0001c0001t0001g0094 a0001c0001t0001g0177	2	HG02109.hp1 HG02809.hp2 HG02109.hp1 HG02809.hp2	intron_variant	MODIFIER	c.3054-412A>G c.3054-412A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124086135
chrX:124086154	A A	AG AG	2	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0174 a0001c0001t0004g0175	2	HG02818.hp2 HG02976.hp2 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.3054-391dupG c.3054-391dupG	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124086154
chrX:124086156	G G	GA GA	259	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(256): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	259	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(256): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3054-381dupA c.3054-381dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124086156
chrX:124086281	C C	CT CT	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.3054-260dupT c.3054-260dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34	INFO_REALIGN_3_PRIME	chrX	124086281
chrX:124086533	G G	A A	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.3054-14G>A c.3054-14G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	29/34		chrX	124086533
chrX:124087247	A A	G G	5	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0004g0003	5	HG01884.hp2 HG02630.hp2 HG02976.hp1 others(2): Show HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 NA20300.hp2	intron_variant	MODIFIER	c.3277+477A>G c.3277+477A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124087247
chrX:124087600	C C	T T	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.3277+830C>T c.3277+830C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124087600
chrX:124087658	G G	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.3277+888G>A c.3277+888G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124087658
chrX:124088054	TA TA	T T	1	a0001c0001t0001g0270 a0001c0001t0001g0270	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.3277+1289delA c.3277+1289delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088054
chrX:124088148	T T	C C	1	a0001c0001t0001g0124 a0001c0001t0001g0124	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.3277+1378T>C c.3277+1378T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124088148
chrX:124088170	ATC ATC	A A	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.3277+1412_3277+141 others(6): Show c.3277+1412_3277+1413delCT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088170
chrX:124088182	C C	CT CT	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.3277+1421dupT c.3277+1421dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088182
chrX:124088240	C C	CT CT	1	a0001c0001t0010g0164 a0001c0001t0010g0164	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.3277+1480dupT c.3277+1480dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088240
chrX:124088417	T T	C C	46	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(43): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	46	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(43): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3277+1647T>C c.3277+1647T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124088417
chrX:124088424	A A	G G	1	a0001c0001t0001g0272 a0001c0001t0001g0272	1	HG01517.hp1 HG01517.hp1	intron_variant	MODIFIER	c.3277+1654A>G c.3277+1654A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124088424
chrX:124088614	T T	TC TC	2	a0001c0001t0001g0043 a0001c0001t0002g0049 a0001c0001t0001g0043 a0001c0001t0002g0049	2	NA19082.hp1 NA19090.hp1 NA19082.hp1 NA19090.hp1	intron_variant	MODIFIER	c.3277+1845dupC c.3277+1845dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088614
chrX:124088615	C C	CT CT	103	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(100): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0170 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0209 a0001c0001t0001g0261 a0001c0001t0001g0266 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0009g0139 a0001c0003t0001g0078 a0001c0007t0001g0165	103	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(100): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02451.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02723.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19079.hp1 NA19081.hp1 NA19085.hp1 NA19087.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3277+1863dupT c.3277+1863dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088615
chrX:124088615	C C	CTT CTT	4	a0001c0001t0001g0100 a0001c0001t0001g0152 a0001c0001t0001g0190 others(1): Show a0001c0001t0001g0100 a0001c0001t0001g0152 a0001c0001t0001g0190 a0001c0001t0007g0141	4	HG02148.hp1 HG02257.hp2 HG02735.hp1 others(1): Show HG02148.hp1 HG02257.hp2 HG02735.hp1 NA19068.hp1	intron_variant	MODIFIER	c.3277+1862_3277+186 others(6): Show c.3277+1862_3277+1863dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088615
chrX:124088615	CT CT	C C	69	a0001c0001t0001g0005 a0001c0001t0001g0105 a0001c0001t0001g0183 others(66): Show a0001c0001t0001g0005 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0208 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0006g0009 a0001c0003t0001g0008 a0002c0004t0001g0255 a0003c0006t0001g0226	69	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(66): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01884.hp1 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02165.hp1 HG02280.hp1 HG02559.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG02818.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03471.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA20300.hp1	intron_variant	MODIFIER	c.3277+1863delT c.3277+1863delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088615
chrX:124088615	CTT CTT	C C	2	a0001c0001t0001g0077 a0001c0001t0001g0191 a0001c0001t0001g0077 a0001c0001t0001g0191	2	HG02717.hp1 HG02895.hp1 HG02717.hp1 HG02895.hp1	intron_variant	MODIFIER	c.3277+1862_3277+186 others(6): Show c.3277+1862_3277+1863delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088615
chrX:124088616	T T	C C	45	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(42): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0010 a0001c0001t0006g0058	45	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(42): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19083.hp1 NA19087.hp2 NA20129.hp2	intron_variant	MODIFIER	c.3277+1846T>C c.3277+1846T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124088616
chrX:124088617	T T	C C	1	a0001c0001t0006g0009 a0001c0001t0006g0009	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.3277+1847T>C c.3277+1847T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124088617
chrX:124088741	A A	C C	1	a0001c0001t0001g0268 a0001c0001t0001g0268	1	HG01361.hp1 HG01361.hp1	intron_variant	MODIFIER	c.3278-1834A>C c.3278-1834A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124088741
chrX:124088913	C C	CT CT	256	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(253): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	256	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(253): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3278-1647dupT c.3278-1647dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088913
chrX:124088913	C C	CTT CTT	4	a0001c0001t0001g0092 a0001c0001t0002g0028 a0001c0001t0002g0198 others(1): Show a0001c0001t0001g0092 a0001c0001t0002g0028 a0001c0001t0002g0198 a0001c0001t0002g0271	4	HG02273.hp1 HG02738.hp1 HG04115.hp1 others(1): Show HG02273.hp1 HG02738.hp1 HG04115.hp1 NA19006.hp1	intron_variant	MODIFIER	c.3278-1648_3278-164 others(6): Show c.3278-1648_3278-1647dupTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088913
chrX:124088913	CT CT	C C	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.3278-1647delT c.3278-1647delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088913
chrX:124088920	T T	TTTTTTTT others(3): Show TTTTTTTTTTC	1	a0001c0001t0001g0111 a0001c0001t0001g0111	1	HG02165.hp2 HG02165.hp2	intron_variant	MODIFIER	c.3278-1647_3278-164 others(14): Show c.3278-1647_3278-1646insTCTTTTTTTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124088920
chrX:124089154	C C	A A	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.3278-1421C>A c.3278-1421C>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124089154
chrX:124089435	T T	A A	105	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(102): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0007t0001g0165 a0004c0005t0007g0083	105	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(102): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3278-1140T>A c.3278-1140T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124089435
chrX:124089475	A A	G G	4	a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0028 others(1): Show a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0044	4	HG00140.hp1 HG00735.hp2 HG02056.hp1 others(1): Show HG00140.hp1 HG00735.hp2 HG02056.hp1 HG04115.hp1	intron_variant	MODIFIER	c.3278-1100A>G c.3278-1100A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124089475
chrX:124089486	G G	A A	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.3278-1089G>A c.3278-1089G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124089486
chrX:124089729	T T	C C	1	a0001c0001t0002g0025 a0001c0001t0002g0025	1	HG03704.hp2 HG03704.hp2	intron_variant	MODIFIER	c.3278-846T>C c.3278-846T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124089729
chrX:124089782	A A	G G	70	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 others(67): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0177 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0209 a0001c0001t0001g0261 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0007g0141 a0001c0001t0009g0139 a0004c0005t0007g0083	70	HG00558.hp2 HG00639.hp1 HG00642.hp1 others(67): Show HG00558.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01517.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02109.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02965.hp1 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18950.hp2 NA18954.hp1 NA18959.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18975.hp1 NA18979.hp2 NA18981.hp1 NA18991.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19012.hp1 NA19056.hp1 NA19066.hp1 NA19068.hp1 NA19079.hp1 NA19087.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3278-793A>G c.3278-793A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124089782
chrX:124090114	T T	C C	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.3278-461T>C c.3278-461T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124090114
chrX:124090160	C C	CA CA	45	a0001c0001t0001g0013 a0001c0001t0001g0055 a0001c0001t0001g0065 others(42): Show a0001c0001t0001g0013 a0001c0001t0001g0055 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0073 a0001c0001t0001g0079 a0001c0001t0001g0085 a0001c0001t0001g0089 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0126 a0001c0001t0001g0135 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0002g0062 a0001c0001t0002g0151 a0001c0001t0004g0003 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0008g0001 a0001c0002t0001g0064 a0001c0002t0001g0069 a0001c0007t0001g0165	45	HG00597.hp2 HG01175.hp2 HG01358.hp1 others(42): Show HG00597.hp2 HG01175.hp2 HG01358.hp1 HG01496.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG02083.hp1 HG02135.hp1 HG02257.hp1 HG02451.hp2 HG02602.hp1 HG02630.hp2 HG02818.hp1 HG02818.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03225.hp1 HG03239.hp2 HG03704.hp1 HG04184.hp2 NA18940.hp1 NA18957.hp1 NA18964.hp1 NA18965.hp1 NA18971.hp1 NA18977.hp1 NA18984.hp1 NA18994.hp1 NA18999.hp2 NA19007.hp1 NA19009.hp1 NA19062.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19080.hp1 NA19081.hp2 NA19088.hp1 NA19089.hp1 NA20300.hp2	intron_variant	MODIFIER	c.3278-389dupA c.3278-389dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	C C	CAA CAA	6	a0001c0001t0001g0103 a0001c0001t0001g0108 a0001c0001t0001g0109 others(3): Show a0001c0001t0001g0103 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0155 a0001c0001t0001g0182 a0001c0001t0004g0269	6	HG01928.hp1 HG02280.hp1 HG04228.hp1 others(3): Show HG01928.hp1 HG02280.hp1 HG04228.hp1 NA18949.hp2 NA18982.hp1 NA19085.hp1	intron_variant	MODIFIER	c.3278-390_3278-389d others(4): Show c.3278-390_3278-389dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	C C	CAAA CAAA	8	a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 others(5): Show a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0246 a0001c0001t0001g0250 a0001c0001t0001g0270	8	HG02451.hp1 HG02622.hp1 HG03491.hp2 others(5): Show HG02451.hp1 HG02622.hp1 HG03491.hp2 NA19060.hp1 NA19064.hp1 NA19077.hp2 NA19090.hp2 NA20129.hp2	intron_variant	MODIFIER	c.3278-391_3278-389d others(5): Show c.3278-391_3278-389dupAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	C C	CAAAA CAAAA	82	a0001c0001t0001g0005 a0001c0001t0001g0015 a0001c0001t0001g0054 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0015 a0001c0001t0001g0054 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0102 a0001c0001t0001g0105 a0001c0001t0001g0111 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0146 a0001c0001t0001g0150 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0223 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0002g0136 a0001c0001t0002g0222 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0216 a0001c0001t0007g0141 a0001c0001t0009g0139 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	82	HG00438.hp2 HG00621.hp1 HG00639.hp1 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01123.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01943.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02165.hp1 HG02165.hp2 HG02559.hp1 HG02615.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02922.hp1 HG02922.hp2 HG03195.hp2 HG03540.hp1 HG03669.hp1 HG04184.hp1 NA18612.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18950.hp2 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18981.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA19003.hp1 NA19004.hp1 NA19011.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19065.hp1 NA19068.hp1 NA19080.hp2 NA19081.hp1 NA19087.hp1 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3278-392_3278-389d others(6): Show c.3278-392_3278-389dupAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	C C	CAAAAA CAAAAA	30	a0001c0001t0001g0056 a0001c0001t0001g0100 a0001c0001t0001g0107 others(27): Show a0001c0001t0001g0056 a0001c0001t0001g0100 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0134 a0001c0001t0001g0145 a0001c0001t0001g0184 a0001c0001t0001g0191 a0001c0001t0001g0200 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0207 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0224 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0247 a0001c0001t0001g0252 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0268 a0001c0001t0002g0198 a0001c0001t0002g0271 a0001c0001t0003g0210 a0001c0001t0003g0244	30	HG01099.hp1 HG01175.hp1 HG01361.hp1 others(27): Show HG01099.hp1 HG01175.hp1 HG01361.hp1 HG02055.hp1 HG02145.hp1 HG02148.hp1 HG02486.hp1 HG02572.hp1 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG03195.hp1 HG03239.hp1 HG03654.hp1 HG03831.hp1 HG04199.hp1 HG04204.hp1 NA18947.hp2 NA18949.hp1 NA18967.hp1 NA18970.hp1 NA18974.hp1 NA18999.hp1 NA19003.hp2 NA19005.hp1 NA19006.hp1 NA19063.hp1 NA19079.hp1 NA19086.hp1 NA21309.hp2	intron_variant	MODIFIER	c.3278-393_3278-389d others(7): Show c.3278-393_3278-389dupAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	C C	CAAAAAA CAAAAAA	3	a0001c0001t0001g0082 a0001c0001t0001g0202 a0001c0001t0002g0193 a0001c0001t0001g0082 a0001c0001t0001g0202 a0001c0001t0002g0193	3	HG03017.hp1 NA18950.hp1 NA18995.hp1 HG03017.hp1 NA18950.hp1 NA18995.hp1	intron_variant	MODIFIER	c.3278-394_3278-389d others(8): Show c.3278-394_3278-389dupAAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	CA CA	C C	14	a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 others(11): Show a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0001t0002g0029 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0044 a0001c0001t0002g0051	14	HG01993.hp1 HG02056.hp1 HG02148.hp2 others(11): Show HG01993.hp1 HG02056.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp1 HG02559.hp2 HG02723.hp1 HG02896.hp1 HG03209.hp1 HG03486.hp1 HG03669.hp2 NA18983.hp1 NA19000.hp1 NA19090.hp1	intron_variant	MODIFIER	c.3278-389delA c.3278-389delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	CAA CAA	C C	35	a0001c0001t0002g0011 a0001c0001t0002g0020 a0001c0001t0002g0021 others(32): Show a0001c0001t0002g0011 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0030 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	35	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(32): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG02080.hp2 HG02132.hp1 HG02273.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18990.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3278-390_3278-389d others(4): Show c.3278-390_3278-389delAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	CAAAAAAA others(2): Show CAAAAAAAAA	C C	1	a0001c0001t0001g0096 a0001c0001t0001g0096	1	NA18954.hp1 NA18954.hp1	intron_variant	MODIFIER	c.3278-397_3278-389d others(11): Show c.3278-397_3278-389delAAAAAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090160	CAAAAAAA others(4): Show CAAAAAAAAAAA	C C	1	a0001c0003t0001g0008 a0001c0003t0001g0008	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.3278-399_3278-389d others(13): Show c.3278-399_3278-389delAAAAAAAAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34	INFO_REALIGN_3_PRIME	chrX	124090160
chrX:124090187	G G	T T	37	a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0082 others(34): Show a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0082 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0134 a0001c0001t0001g0137 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0150 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0261 a0001c0001t0002g0136 a0001c0001t0007g0141 a0001c0001t0009g0139 a0004c0005t0007g0083	37	HG00639.hp1 HG00735.hp1 HG00738.hp1 others(34): Show HG00639.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01256.hp1 HG01261.hp1 HG01361.hp2 HG01433.hp1 HG01943.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02148.hp1 HG02165.hp2 HG02683.hp2 HG03669.hp1 NA18612.hp1 NA18941.hp2 NA18947.hp2 NA18950.hp2 NA18954.hp1 NA18959.hp1 NA18967.hp1 NA18968.hp2 NA18981.hp1 NA18991.hp1 NA18995.hp1 NA19003.hp2 NA19056.hp1 NA19068.hp1 NA19079.hp1 NA19087.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3278-388G>T c.3278-388G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	30/34		chrX	124090187
chrX:124091609	C C	CA CA	2	a0001c0001t0001g0080 a0001c0001t0001g0093 a0001c0001t0001g0080 a0001c0001t0001g0093	2	HG00642.hp1 HG01192.hp1 HG00642.hp1 HG01192.hp1	intron_variant	MODIFIER	c.3578+646dupA c.3578+646dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34	INFO_REALIGN_3_PRIME	chrX	124091609
chrX:124092175	T T	A A	1	a0001c0001t0001g0158 a0001c0001t0001g0158	1	HG03704.hp1 HG03704.hp1	intron_variant	MODIFIER	c.3578+1211T>A c.3578+1211T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092175
chrX:124092415	G G	A A	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3578+1451G>A c.3578+1451G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092415
chrX:124092555	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.3579-1463C>T c.3579-1463C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092555
chrX:124092640	A A	G G	47	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(44): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	47	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(44): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3579-1378A>G c.3579-1378A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092640
chrX:124092668	C C	T T	1	a0001c0001t0001g0137 a0001c0001t0001g0137	1	HG00639.hp1 HG00639.hp1	intron_variant	MODIFIER	c.3579-1350C>T c.3579-1350C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092668
chrX:124092794	T T	A A	1	a0001c0001t0001g0190 a0001c0001t0001g0190	1	HG02257.hp2 HG02257.hp2	intron_variant	MODIFIER	c.3579-1224T>A c.3579-1224T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092794
chrX:124092984	G G	A A	82	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 others(79): Show a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0010g0164 a0002c0004t0001g0255 a0003c0006t0001g0226	82	HG00438.hp2 HG00621.hp1 HG00639.hp2 others(79): Show HG00438.hp2 HG00621.hp1 HG00639.hp2 HG01081.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01884.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02109.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.3579-1034G>A c.3579-1034G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124092984
chrX:124093017	T T	C C	1	a0001c0001t0004g0269 a0001c0001t0004g0269	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.3579-1001T>C c.3579-1001T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124093017
chrX:124093225	T T	A A	60	a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0105 others(57): Show a0001c0001t0001g0005 a0001c0001t0001g0081 a0001c0001t0001g0105 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0270 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0271 a0002c0004t0001g0255 a0003c0006t0001g0226	60	HG00438.hp2 HG00621.hp1 HG01123.hp1 others(57): Show HG00438.hp2 HG00621.hp1 HG01123.hp1 HG01175.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02165.hp1 HG02683.hp1 HG02698.hp1 HG02738.hp1 HG03017.hp1 HG03491.hp2 HG03654.hp1 HG03831.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 NA18941.hp1 NA18943.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp1 NA18981.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19055.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19086.hp1 NA19090.hp2 NA19091.hp1	intron_variant	MODIFIER	c.3579-793T>A c.3579-793T>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124093225
chrX:124093472	C C	CT CT	5	a0001c0001t0001g0093 a0001c0001t0001g0135 a0001c0001t0001g0203 others(2): Show a0001c0001t0001g0093 a0001c0001t0001g0135 a0001c0001t0001g0203 a0001c0001t0001g0207 a0001c0001t0007g0141	5	HG01192.hp1 HG02486.hp1 HG02572.hp1 others(2): Show HG01192.hp1 HG02486.hp1 HG02572.hp1 NA18940.hp1 NA19068.hp1	intron_variant	MODIFIER	c.3579-526dupT c.3579-526dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34	INFO_REALIGN_3_PRIME	chrX	124093472
chrX:124093472	CT CT	C C	63	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(60): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0086 a0001c0001t0001g0108 a0001c0001t0001g0112 a0001c0001t0001g0124 a0001c0001t0001g0147 a0001c0001t0001g0150 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0183 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0201 a0001c0001t0001g0212 a0001c0001t0001g0218 a0001c0001t0001g0227 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0003g0216 a0001c0001t0004g0003 a0001c0001t0004g0175 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	63	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(60): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01167.hp1 HG01256.hp1 HG01346.hp1 HG01515.hp1 HG01993.hp1 HG01993.hp2 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02165.hp1 HG02273.hp2 HG02451.hp1 HG02451.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02698.hp1 HG02723.hp1 HG02818.hp1 HG02818.hp2 HG02976.hp1 HG03209.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18954.hp2 NA18957.hp2 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18990.hp1 NA19011.hp2 NA19062.hp1 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3579-526delT c.3579-526delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34	INFO_REALIGN_3_PRIME	chrX	124093472
chrX:124093472	CTT CTT	C C	3	a0001c0001t0002g0002 a0001c0001t0002g0036 a0001c0001t0002g0041 a0001c0001t0002g0002 a0001c0001t0002g0036 a0001c0001t0002g0041	3	HG01257.hp2 HG01517.hp2 HG02896.hp1 HG01257.hp2 HG01517.hp2 HG02896.hp1	intron_variant	MODIFIER	c.3579-527_3579-526d others(4): Show c.3579-527_3579-526delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34	INFO_REALIGN_3_PRIME	chrX	124093472
chrX:124093525	G G	T T	1	a0001c0001t0001g0211 a0001c0001t0001g0211	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.3579-493G>T c.3579-493G>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124093525
chrX:124093598	A A	T T	1	a0001c0001t0001g0161 a0001c0001t0001g0161	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.3579-420A>T c.3579-420A>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124093598
chrX:124093745	A A	G G	1	a0001c0001t0001g0195 a0001c0001t0001g0195	1	NA19065.hp1 NA19065.hp1	intron_variant	MODIFIER	c.3579-273A>G c.3579-273A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124093745
chrX:124093754	T T	C C	49	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	49	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(46): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3579-264T>C c.3579-264T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	32/34		chrX	124093754
chrX:124094198	A A	G G	7	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173	7	HG01952.hp1 HG02280.hp2 HG02647.hp1 others(4): Show HG01952.hp1 HG02280.hp2 HG02647.hp1 HG02809.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	intron_variant	MODIFIER	c.3705+54A>G c.3705+54A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124094198
chrX:124094442	TTTTA TTTTA	T T	1	a0001c0001t0001g0201 a0001c0001t0001g0201	1	HG02165.hp1 HG02165.hp1	intron_variant	MODIFIER	c.3705+303_3705+306d others(6): Show c.3705+303_3705+306delTTTA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34	INFO_REALIGN_3_PRIME	chrX	124094442
chrX:124094678	C C	G G	4	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 others(1): Show a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0002g0002	4	HG02258.hp1 HG02723.hp1 HG02896.hp1 others(1): Show HG02258.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.3705+534C>G c.3705+534C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124094678
chrX:124094731	C C	G G	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3705+587C>G c.3705+587C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124094731
chrX:124094806	T T	C C	1	a0001c0001t0007g0141 a0001c0001t0007g0141	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.3706-566T>C c.3706-566T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124094806
chrX:124094903	C C	T T	1	a0001c0001t0002g0259 a0001c0001t0002g0259	1	NA19064.hp2 NA19064.hp2	intron_variant	MODIFIER	c.3706-469C>T c.3706-469C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124094903
chrX:124094935	G G	GT GT	52	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(49): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0091 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0003t0001g0078	52	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(49): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01891.hp1 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02886.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18906.hp2 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3706-427dupT c.3706-427dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34	INFO_REALIGN_3_PRIME	chrX	124094935
chrX:124095174	G G	A A	1	a0001c0001t0001g0179 a0001c0001t0001g0179	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.3706-198G>A c.3706-198G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124095174
chrX:124095216	C C	T T	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.3706-156C>T c.3706-156C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	33/34		chrX	124095216
chrX:124095545	T T	C C	2	a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0147 a0001c0001t0001g0162	2	HG02451.hp2 HG02818.hp1 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.3783+96T>C c.3783+96T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124095545
chrX:124095943	G G	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.3783+494G>C c.3783+494G>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124095943
chrX:124096018	C C	G G	2	a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0240 a0001c0001t0001g0268	2	HG01361.hp1 HG03239.hp1 HG01361.hp1 HG03239.hp1	intron_variant	MODIFIER	c.3783+569C>G c.3783+569C>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124096018
chrX:124096092	G G	A A	254	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(251): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0070 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0193 a0001c0001t0002g0198 a0001c0001t0002g0222 a0001c0001t0002g0259 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0008 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	254	HG00140.hp1 HG00280.hp1 HG00438.hp1 others(251): Show HG00140.hp1 HG00280.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3783+643G>A c.3783+643G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124096092
chrX:124096176	AT AT	A A	50	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(47): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0001g0073 a0001c0001t0001g0195 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	50	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(47): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01891.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19065.hp1 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3783+734delT c.3783+734delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124096176
chrX:124096183	T T	TC TC	10	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 others(7): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0178 a0001c0001t0001g0243 a0001c0001t0004g0003 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	10	HG01496.hp1 HG01884.hp2 HG02630.hp2 others(7): Show HG01496.hp1 HG01884.hp2 HG02630.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1 NA18906.hp1 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.3783+741dupC c.3783+741dupC	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124096183
chrX:124096227	A A	C C	1	a0001c0001t0001g0128 a0001c0001t0001g0128	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3783+778A>C c.3783+778A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124096227
chrX:124096475	A A	AT AT	2	a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0147 a0001c0001t0001g0162	2	HG02451.hp2 HG02818.hp1 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.3783+1035dupT c.3783+1035dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124096475
chrX:124096500	T T	C C	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.3783+1051T>C c.3783+1051T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124096500
chrX:124096900	C C	T T	3	a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269 a0001c0001t0004g0174 a0001c0001t0004g0175 a0001c0001t0004g0269	3	HG02280.hp1 HG02818.hp2 HG02976.hp2 HG02280.hp1 HG02818.hp2 HG02976.hp2	intron_variant	MODIFIER	c.3783+1451C>T c.3783+1451C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124096900
chrX:124097057	C C	T T	46	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(43): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	46	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(43): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3783+1608C>T c.3783+1608C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124097057
chrX:124097144	A A	C C	3	a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0062	3	HG00280.hp1 HG01123.hp2 HG01175.hp2 HG00280.hp1 HG01123.hp2 HG01175.hp2	intron_variant	MODIFIER	c.3783+1695A>C c.3783+1695A>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124097144
chrX:124097179	C C	CA CA	169	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(166): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0067 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0204 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0002 a0001c0001t0002g0041 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0193 a0001c0001t0002g0222 a0001c0001t0002g0271 a0001c0001t0003g0106 a0001c0001t0003g0208 a0001c0001t0003g0216 a0001c0001t0003g0244 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0001t0010g0164 a0001c0003t0001g0078 a0001c0007t0001g0165 a0002c0004t0001g0255 a0003c0006t0001g0226 a0004c0005t0007g0083	169	HG00558.hp2 HG00621.hp1 HG00639.hp1 others(166): Show HG00558.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01884.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03130.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03491.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03831.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18999.hp1 NA18999.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19055.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp2 NA20129.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.3783+1755dupA c.3783+1755dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124097179
chrX:124097179	C C	CAA CAA	75	a0001c0001t0001g0013 a0001c0001t0001g0066 a0001c0001t0001g0068 others(72): Show a0001c0001t0001g0013 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0081 a0001c0001t0001g0089 a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0001g0120 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0146 a0001c0001t0001g0152 a0001c0001t0001g0154 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0178 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0200 a0001c0001t0001g0203 a0001c0001t0001g0205 a0001c0001t0001g0209 a0001c0001t0001g0215 a0001c0001t0001g0220 a0001c0001t0001g0230 a0001c0001t0001g0243 a0001c0001t0001g0247 a0001c0001t0001g0258 a0001c0001t0001g0264 a0001c0001t0001g0266 a0001c0001t0002g0011 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0151 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0003g0210 a0001c0001t0004g0003 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058 a0001c0002t0001g0063 a0001c0002t0001g0064 a0001c0002t0001g0069	75	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(72): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG01175.hp1 HG01346.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01952.hp1 HG01993.hp1 HG02027.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp1 HG02258.hp1 HG02273.hp2 HG02280.hp2 HG02572.hp1 HG02630.hp2 HG02735.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp2 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 NA18522.hp1 NA18906.hp1 NA18943.hp1 NA18944.hp1 NA18949.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp1 NA18983.hp1 NA18991.hp1 NA19000.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19064.hp2 NA19077.hp1 NA19081.hp1 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19087.hp2 NA19240.hp1 NA20300.hp1	intron_variant	MODIFIER	c.3783+1754_3783+175 others(6): Show c.3783+1754_3783+1755dupAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124097179
chrX:124097179	C C	CAAA CAAA	17	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0016 others(14): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0053 a0001c0001t0001g0065 a0001c0001t0001g0076 a0001c0001t0001g0084 a0001c0001t0001g0128 a0001c0001t0001g0168 a0001c0001t0002g0018 a0001c0001t0002g0026 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0070 a0001c0003t0001g0008	17	HG00558.hp1 HG00735.hp2 HG02148.hp2 others(14): Show HG00558.hp1 HG00735.hp2 HG02148.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02886.hp2 HG03471.hp1 HG03579.hp1 HG03710.hp1 NA18990.hp1 NA19090.hp1 NA20129.hp2 NA20300.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3783+1753_3783+175 others(7): Show c.3783+1753_3783+1755dupAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124097179
chrX:124097179	C C	CAAAA CAAAA	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG03540.hp1 HG03540.hp1	intron_variant	MODIFIER	c.3783+1752_3783+175 others(8): Show c.3783+1752_3783+1755dupAAAA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124097179
chrX:124097179	CA CA	C C	1	a0001c0001t0001g0166 a0001c0001t0001g0166	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.3783+1755delA c.3783+1755delA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124097179
chrX:124097861	C C	T T	2	a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0059 a0001c0001t0002g0061	2	HG00280.hp1 HG01123.hp2 HG00280.hp1 HG01123.hp2	intron_variant	MODIFIER	c.3783+2412C>T c.3783+2412C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124097861
chrX:124097903	G G	A A	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.3783+2454G>A c.3783+2454G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124097903
chrX:124097956	T T	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.3783+2507T>C c.3783+2507T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124097956
chrX:124098065	T T	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.3784-2509T>C c.3784-2509T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124098065
chrX:124098085	T T	C C	1	a0001c0001t0001g0092 a0001c0001t0001g0092	1	HG02273.hp1 HG02273.hp1	intron_variant	MODIFIER	c.3784-2489T>C c.3784-2489T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124098085
chrX:124098342	G G	A A	48	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 others(45): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0057 a0001c0001t0002g0070 a0001c0001t0002g0185 a0001c0001t0002g0259 a0001c0001t0005g0019 a0001c0001t0005g0027 a0001c0001t0005g0034 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0058	48	HG00140.hp1 HG00438.hp1 HG00558.hp1 others(45): Show HG00140.hp1 HG00438.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00735.hp2 HG01257.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01993.hp1 HG02056.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp2 HG02273.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03209.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03540.hp1 HG03669.hp2 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18944.hp1 NA18952.hp1 NA18960.hp1 NA18969.hp1 NA18975.hp2 NA18979.hp1 NA18983.hp1 NA18990.hp1 NA19000.hp1 NA19011.hp2 NA19064.hp2 NA19077.hp1 NA19082.hp1 NA19083.hp1 NA19087.hp2 NA19090.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.3784-2232G>A c.3784-2232G>A	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124098342
chrX:124098354	CTT CTT	C C	3	a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0002g0002	3	HG02723.hp1 HG02896.hp1 HG03486.hp1 HG02723.hp1 HG02896.hp1 HG03486.hp1	intron_variant	MODIFIER	c.3784-2218_3784-221 others(6): Show c.3784-2218_3784-2217delTT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124098354
chrX:124098392	A A	AT AT	1	a0001c0001t0010g0164 a0001c0001t0010g0164	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.3784-2176dupT c.3784-2176dupT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124098392
chrX:124098743	AT AT	A A	1	a0001c0001t0001g0086 a0001c0001t0001g0086	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.3784-1826delT c.3784-1826delT	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124098743
chrX:124099259	C C	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.3784-1315C>T c.3784-1315C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124099259
chrX:124099307	T T	C C	4	a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 others(1): Show a0001c0001t0002g0059 a0001c0001t0002g0060 a0001c0001t0002g0061 a0001c0001t0002g0062	4	HG00280.hp1 HG01123.hp2 HG01175.hp2 others(1): Show HG00280.hp1 HG01123.hp2 HG01175.hp2 NA20805.hp1	intron_variant	MODIFIER	c.3784-1267T>C c.3784-1267T>C	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124099307
chrX:124099577	T T	G G	109	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(106): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0209 a0001c0001t0001g0225 a0001c0001t0001g0241 a0001c0001t0001g0261 a0001c0001t0001g0267 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0151 a0001c0001t0007g0141 a0001c0001t0008g0001 a0001c0001t0009g0139 a0001c0003t0001g0078 a0001c0007t0001g0165 a0004c0005t0007g0083	109	HG00558.hp2 HG00597.hp2 HG00639.hp1 others(106): Show HG00558.hp2 HG00597.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01517.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02257.hp1 HG02273.hp1 HG02451.hp2 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp1 HG02965.hp1 HG03130.hp1 HG03239.hp2 HG03486.hp2 HG03540.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18941.hp2 NA18947.hp2 NA18948.hp1 NA18949.hp2 NA18950.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp1 NA18964.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18991.hp1 NA18994.hp1 NA18995.hp1 NA18999.hp2 NA19003.hp2 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19062.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19240.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.3784-997T>G c.3784-997T>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124099577
chrX:124100224	T T	TA TA	2	a0001c0001t0001g0159 a0001c0001t0009g0139 a0001c0001t0001g0159 a0001c0001t0009g0139	2	HG00735.hp1 HG01069.hp1 HG00735.hp1 HG01069.hp1	intron_variant	MODIFIER	c.3784-349dupA c.3784-349dupA	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34	INFO_REALIGN_3_PRIME	chrX	124100224
chrX:124100425	A A	G G	1	a0001c0001t0001g0147 a0001c0001t0001g0147	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.3784-149A>G c.3784-149A>G	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124100425
chrX:124100542	C C	T T	2	a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0147 a0001c0001t0001g0162	2	HG02451.hp2 HG02818.hp1 HG02451.hp2 HG02818.hp1	intron_variant	MODIFIER	c.3784-32C>T c.3784-32C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124100542
chrX:124100555	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.3784-19C>T c.3784-19C>T	STAG2	ENSG00000101972.20	transcript	ENST00000371145.8	protein_coding	34/34		chrX	124100555

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🧬 JoGo Online Haplotype Explorer STAG2_chrX_123956706_124107656

JoGo Local Haplotype Explorer (on iGV) STAG2_chrX_123956706_124107656

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ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 7)

TTranscript Level Haplotype Info (Total: 10)

GGenebody Level Haplotype Info (Total: 276)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 7)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 16)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 276)

Haplotype Details by Sample (Haploid Level) (Total: 276)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 3)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 9)

GGenebody Level Haplotype Variants (Intron) (Total: 1405)

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Annotation (Repeats)

Annotation (SNP Array)