Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SLCO5A1_chr8_69662046_69839978	69772563	AGAAAGGA others(13): Show AGAAAGGAAAGGAAAGGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG02145.hp2 HG02280.hp1 others(2): Show HG01358.hp1 HG02145.hp2 HG02280.hp1 HG02630.hp1 NA21309.hp1	a0001 a0002 a0015 a0001 a0002 a0015	a0001c0001 a0002c0002 a0015c0020 a0001c0001 a0002c0002 a0015c0020	a0001c0001t0039 a0002c0002t0002 a0002c0002t0009 others(2): Show a0001c0001t0039 a0002c0002t0002 a0002c0002t0009 a0002c0002t0015 a0015c0020t0088	a0001c0001t0039g0157 a0002c0002t0002g0098 a0002c0002t0009g0122 others(2): Show a0001c0001t0039g0157 a0002c0002t0002g0098 a0002c0002t0009g0122 a0002c0002t0015g0124 a0015c0020t0088g0101	5	73	0.0685	-20	c.908 others(39): Show c.908-10708_908-10689delCTTTCCTTTCCTTTCCTTTC	SLCO5A1	ENSG00000137571.11	transcript	ENST00000260126.9	protein_coding	2/9			chr8	TogoVar
SLCO5A1_chr8_69662046_69839978	69784895	GAAGAAAG others(13): Show GAAGAAAGAAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01099.hp2 HG01106.hp2 others(12): Show HG00621.hp1 HG01099.hp2 HG01106.hp2 HG01243.hp1 HG01934.hp2 HG02015.hp2 HG02258.hp2 HG02647.hp2 HG03041.hp1 HG03540.hp1 HG03688.hp1 NA18949.hp2 NA18955.hp2 NA18967.hp1 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0003 others(1): Show a0001c0001 a0002c0002 a0002c0003 a0002c0012	a0001c0001t0003 a0001c0001t0008 a0001c0001t0023 others(11): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0023 a0001c0001t0033 a0001c0001t0043 a0001c0001t0046 a0001c0001t0062 a0002c0002t0002 a0002c0002t0006 a0002c0002t0015 a0002c0002t0017 a0002c0002t0047 a0002c0003t0013 a0002c0012t0095	a0001c0001t0003g0008 a0001c0001t0008g0181 a0001c0001t0023g0139 others(12): Show a0001c0001t0003g0008 a0001c0001t0008g0181 a0001c0001t0023g0139 a0001c0001t0023g0226 a0001c0001t0033g0005 a0001c0001t0043g0173 a0001c0001t0046g0141 a0001c0001t0062g0153 a0002c0002t0002g0064 a0002c0002t0006g0026 a0002c0002t0015g0090 a0002c0002t0017g0069 a0002c0002t0047g0131 a0002c0003t0013g0095 a0002c0012t0095g0268	15	71	0.2113	-20	c.908 others(39): Show c.908-23040_908-23021delTCTTTCTTTCTTTCTTTCTT	SLCO5A1	ENSG00000137571.11	transcript	ENST00000260126.9	protein_coding	2/9			chr8	TogoVar
SLCO6A1_chr5_102366774_102504001	102460899	CATATATA others(13): Show CATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0248 a0001c0001t0001g0248	1	20	0.0500	-20	c.900 others(37): Show c.900-1142_900-1123delATATATATATATATATATAT	SLCO6A1	ENSG00000205359.10	transcript	ENST00000506729.6	protein_coding	4/13			chr5	TogoVar
SLCO6A1_chr5_102366774_102504001	102498364	GGCTGGGC others(13): Show GGCTGGGCCACCCCAGGGCAT	G G	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0310 a0001c0001t0001g0310	1	339	0.0029	-20	c.358 others(35): Show c.358+103_358+122delATGCCCTGGGGTGGCCCAGC	SLCO6A1	ENSG00000205359.10	transcript	ENST00000506729.6	protein_coding	1/13			chr5	TogoVar
SLFN11_chr17_35345305_35378621	35349755	CAAAATAA others(13): Show CAAAATAAAATAAAATAAAAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp1 HG02886.hp1 HG03098.hp2 others(3): Show HG02622.hp1 HG02886.hp1 HG03098.hp2 NA18998.hp2 NA19002.hp1 NA19043.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0003 a0002c0001t0007 a0002c0001t0003 a0002c0001t0007	a0002c0001t0003g0008 a0002c0001t0003g0030 a0002c0001t0007g0284 a0002c0001t0003g0008 a0002c0001t0003g0030 a0002c0001t0007g0284	6	385	0.0156	-20	c.25 others(31): Show c.2581_*2600delATTTTATTTTATTTTATTTT	SLFN11	ENSG00000172716.17	transcript	ENST00000685675.1	protein_coding		549		chr17	TogoVar
SLFN11_chr17_35345305_35378621	35378447	GTATATAT others(13): Show GTATATATATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0003 a0002c0001t0003	a0002c0001t0003g0155 a0002c0001t0003g0155	1	78	0.0128	-20	c.-52 others(31): Show c.-5228_-5209delTATATATATATATATATATA	SLFN11	ENSG00000172716.17	transcript	ENST00000685675.1	protein_coding		4827		chr17	TogoVar
SLFN12L_chr17_35459254_35542678	35476454	CAAGGAAG others(13): Show CAAGGAAGGAAGGAAGGAAGG	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00733.hp1 HG00733.hp2 others(41): Show HG00408.hp1 HG00733.hp1 HG00733.hp2 HG01175.hp1 HG01192.hp1 HG01943.hp2 HG01978.hp1 HG02027.hp1 HG02155.hp2 HG02723.hp1 HG03130.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03704.hp2 HG03831.hp1 NA18612.hp1 NA18943.hp1 NA18950.hp2 NA18952.hp2 NA18955.hp2 NA18965.hp2 NA18968.hp2 NA18970.hp2 NA18980.hp2 NA18981.hp1 NA18987.hp2 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18992.hp1 NA18993.hp1 NA18997.hp1 NA18998.hp1 NA19004.hp1 NA19004.hp2 NA19062.hp1 NA19066.hp1 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19084.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0005 a0004c0004 a0001c0001 a0003c0005 a0004c0004	a0001c0001t0087 a0003c0005t0007 a0003c0005t0014 others(13): Show a0001c0001t0087 a0003c0005t0007 a0003c0005t0014 a0003c0005t0015 a0003c0005t0066 a0003c0005t0097 a0004c0004t0003 a0004c0004t0009 a0004c0004t0025 a0004c0004t0100 a0004c0004t0101 a0004c0004t0114 a0004c0004t0115 a0004c0004t0117 a0004c0004t0128 a0004c0004t0129	a0001c0001t0087g0085 a0003c0005t0007g0106 a0003c0005t0007g0149 others(41): Show a0001c0001t0087g0085 a0003c0005t0007g0106 a0003c0005t0007g0149 a0003c0005t0007g0150 a0003c0005t0014g0096 a0003c0005t0015g0071 a0003c0005t0015g0325 a0003c0005t0066g0259 a0003c0005t0097g0286 a0004c0004t0003g0092 a0004c0004t0003g0095 a0004c0004t0003g0099 a0004c0004t0003g0159 a0004c0004t0003g0160 a0004c0004t0003g0163 a0004c0004t0003g0189 a0004c0004t0003g0191 a0004c0004t0003g0200 a0004c0004t0003g0208 a0004c0004t0003g0209 a0004c0004t0003g0210 a0004c0004t0003g0212 a0004c0004t0003g0280 a0004c0004t0003g0301 a0004c0004t0003g0311 a0004c0004t0003g0342 a0004c0004t0009g0094 a0004c0004t0009g0097 a0004c0004t0009g0107 a0004c0004t0009g0108 a0004c0004t0009g0109 a0004c0004t0009g0148 a0004c0004t0009g0197 a0004c0004t0009g0241 a0004c0004t0025g0237 a0004c0004t0025g0270 a0004c0004t0025g0289 a0004c0004t0100g0235 a0004c0004t0101g0201 a0004c0004t0114g0162 a0004c0004t0115g0213 a0004c0004t0117g0268 a0004c0004t0128g0341 a0004c0004t0129g0236	44	125	0.3520	-20	c.127 others(37): Show c.1277-989_1277-970delCCTTCCTTCCTTCCTTCCTT	SLFN12L	ENSG00000205045.12	transcript	ENST00000628453.4	protein_coding	4/4			chr17	TogoVar
SLFN12L_chr17_35459254_35542678	35495900	AACACACA others(13): Show AACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0011 a0002c0003t0011	a0002c0003t0011g0022 a0002c0003t0011g0022	1	28	0.0357	-20	c.87- others(37): Show c.87-15725_87-15706delGTGTGTGTGTGTGTGTGTGT	SLFN12L	ENSG00000205045.12	transcript	ENST00000628453.4	protein_coding	2/4			chr17	TogoVar
SLFN12L_chr17_35459254_35542678	35530420	AGGAAGGA others(13): Show AGGAAGGAAGGGAAGGGAAGG	A A	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0193 a0001c0001t0006g0193	1	328	0.0030	-20	c.-60 others(39): Show c.-606+7133_-606+7152delCCTTCCCTTCCCTTCCTTCC	SLFN12L	ENSG00000205045.12	transcript	ENST00000628453.4	protein_coding	1/4			chr17	TogoVar
SLFN12L_chr17_35459254_35542678	35539332	AAAAGAAA others(13): Show AAAAGAAAGAAAGAAAGAAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG01261.hp1 NA19012.hp1 others(4): Show HG00597.hp1 HG01261.hp1 NA19012.hp1 NA19057.hp1 NA19058.hp2 NA19060.hp1 NA19087.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0005c0006	a0001c0001t0004 a0001c0001t0132 a0001c0002t0017 others(2): Show a0001c0001t0004 a0001c0001t0132 a0001c0002t0017 a0002c0003t0001 a0005c0006t0005	a0001c0001t0004g0309 a0001c0001t0132g0308 a0001c0002t0017g0317 others(4): Show a0001c0001t0004g0309 a0001c0001t0132g0308 a0001c0002t0017g0317 a0002c0003t0001g0281 a0005c0006t0005g0283 a0005c0006t0005g0285 a0005c0006t0005g0307	7	189	0.0370	-20	c.-23 others(31): Show c.-2385_-2366delCTTTCTTTCTTTCTTTCTTT	SLFN12L	ENSG00000205045.12	transcript	ENST00000628453.4	protein_coding		1655		chr17	TogoVar
SLFN14_chr17_35538985_35565819	35539332	AAAAGAAA others(13): Show AAAAGAAAGAAAGAAAGAAAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 HG01261.hp1 HG03669.hp2 others(11): Show HG00597.hp2 HG01261.hp1 HG03669.hp2 NA18947.hp2 NA18960.hp2 NA18964.hp2 NA18999.hp2 NA19003.hp2 NA19012.hp1 NA19056.hp2 NA19057.hp1 NA19058.hp2 NA19060.hp2 NA19087.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0003c0003t0018 a0001c0001t0001 a0002c0002t0001 a0003c0003t0018	a0001c0001t0001g0001 a0001c0001t0001g0035 a0001c0001t0001g0109 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0035 a0001c0001t0001g0109 a0002c0002t0001g0134 a0003c0003t0018g0085	14	234	0.0598	-20	c.88 others(31): Show c.8887_*8906delCTTTCTTTCTTTCTTTCTTT	SLFN14	ENSG00000236320.4	transcript	ENST00000674182.1	protein_coding		4652		chr17	TogoVar
SLIT1_chr10_96993038_97190959	97166554	GGAAAGAG others(13): Show GGAAAGAGAGAGAGAGAGAAA	G G	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0002 a0001c0001t0013g0002	1	226	0.0044	-20	c.198 others(37): Show c.198-1684_198-1665delTTTCTCTCTCTCTCTCTTTC	SLIT1	ENSG00000187122.17	transcript	ENST00000266058.9	protein_coding	1/36			chr10	TogoVar
SLIT2_chr4_20246905_20625561	20260919	TTCCTTAC others(13): Show TTCCTTACCTCTCTAACTAGC	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01358.hp1 HG02559.hp1 others(21): Show HG00408.hp1 HG01358.hp1 HG02559.hp1 HG02622.hp2 HG02922.hp1 HG02970.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03453.hp1 HG03471.hp1 HG03491.hp1 HG03579.hp2 NA18522.hp2 NA18944.hp1 NA18969.hp1 NA18975.hp2 NA18994.hp1 NA19010.hp1 NA19043.hp1 NA19078.hp2 NA19082.hp1 NA20300.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0002 a0001c0025 others(1): Show a0001c0001 a0001c0002 a0001c0025 a0006c0014	a0001c0001t0003 a0001c0001t0007 a0001c0001t0013 others(12): Show a0001c0001t0003 a0001c0001t0007 a0001c0001t0013 a0001c0001t0019 a0001c0001t0051 a0001c0001t0054 a0001c0001t0075 a0001c0001t0076 a0001c0002t0007 a0001c0002t0013 a0001c0002t0019 a0001c0002t0053 a0001c0002t0074 a0001c0025t0001 a0006c0014t0052	a0001c0001t0003g0230 a0001c0001t0007g0165 a0001c0001t0007g0168 others(21): Show a0001c0001t0003g0230 a0001c0001t0007g0165 a0001c0001t0007g0168 a0001c0001t0007g0170 a0001c0001t0007g0178 a0001c0001t0013g0167 a0001c0001t0013g0172 a0001c0001t0019g0164 a0001c0001t0019g0174 a0001c0001t0051g0158 a0001c0001t0054g0157 a0001c0001t0075g0173 a0001c0001t0076g0180 a0001c0002t0007g0175 a0001c0002t0007g0176 a0001c0002t0007g0177 a0001c0002t0007g0182 a0001c0002t0013g0166 a0001c0002t0013g0171 a0001c0002t0019g0181 a0001c0002t0053g0160 a0001c0002t0074g0169 a0001c0025t0001g0179 a0006c0014t0052g0159	24	228	0.1053	-20	c.323 others(37): Show c.323+2986_323+3005delACCTCTCTAACTAGCTCCTT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	3/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20291478	ATATATAT others(13): Show ATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0029 a0001c0002t0029	a0001c0002t0029g0156 a0001c0002t0029g0156	1	216	0.0046	-20	c.395 others(39): Show c.395+22599_395+22618delATATATATATATATTTTTTT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	4/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20291482	ATATATAT others(13): Show ATATATATATATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0066 a0001c0001t0066	a0001c0001t0066g0035 a0001c0001t0066g0035	1	212	0.0047	-20	c.395 others(39): Show c.395+22603_395+22622delATATATATATTTTTTTTTTT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	4/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20307156	CTCCCTCC others(13): Show CTCCCTCCTTCCTTCCTTCCT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0092 a0001c0002t0001g0092	1	154	0.0065	-20	c.395 others(39): Show c.395+38279_395+38298delCTCCTTCCTTCCTTCCTTCC	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	4/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20381899	TAATACAT others(13): Show TAATACATATGTATTTGTATA	T T	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01167.hp1 HG01168.hp2 others(19): Show HG00609.hp1 HG01167.hp1 HG01168.hp2 HG01175.hp2 HG01256.hp1 HG01358.hp1 HG02015.hp1 HG02155.hp2 HG02293.hp2 HG02300.hp2 HG02738.hp2 HG03491.hp2 HG03492.hp2 HG03927.hp1 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG06807.hp1 NA18952.hp1 NA18983.hp2 NA18990.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0001c0019	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(15): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0011 a0001c0001t0015 a0001c0001t0056 a0001c0001t0061 a0001c0001t0063 a0001c0002t0001 a0001c0002t0003 a0001c0002t0009 a0001c0002t0010 a0001c0002t0031 a0001c0002t0049 a0001c0002t0062 a0001c0004t0041 a0001c0019t0040	a0001c0001t0002g0123 a0001c0001t0003g0042 a0001c0001t0003g0043 others(19): Show a0001c0001t0002g0123 a0001c0001t0003g0042 a0001c0001t0003g0043 a0001c0001t0005g0004 a0001c0001t0005g0057 a0001c0001t0007g0178 a0001c0001t0011g0016 a0001c0001t0011g0017 a0001c0001t0011g0022 a0001c0001t0015g0046 a0001c0001t0056g0044 a0001c0001t0061g0024 a0001c0001t0063g0023 a0001c0002t0001g0078 a0001c0002t0003g0139 a0001c0002t0009g0148 a0001c0002t0010g0216 a0001c0002t0031g0201 a0001c0002t0049g0069 a0001c0002t0062g0020 a0001c0004t0041g0073 a0001c0019t0040g0045	22	228	0.0965	-20	c.396 others(39): Show c.396-85837_396-85818delGTATAAATACATATGTATTT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	4/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20463448	GATATATA others(13): Show GATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02622.hp1 NA19060.hp2 HG02622.hp1 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0026 a0001c0008t0032 a0001c0001t0026 a0001c0008t0032	a0001c0001t0026g0029 a0001c0008t0032g0021 a0001c0001t0026g0029 a0001c0008t0032g0021	2	47	0.0426	-20	c.396 others(37): Show c.396-4279_396-4260delATATATATATATATATATAT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	4/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20470484	CTGTGTGT others(13): Show CTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG03942.hp2 HG02698.hp1 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0037 a0001c0004t0002 a0001c0001t0037 a0001c0004t0002	a0001c0001t0037g0187 a0001c0004t0002g0124 a0001c0001t0037g0187 a0001c0004t0002g0124	2	39	0.0513	-20	c.467 others(37): Show c.467+2691_467+2710delGTGTGTGTGTGTGTGTGTGT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	5/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20518571	ATATATAT others(13): Show ATATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	NA18975.hp2 NA18975.hp2	a0001 a0001	a0001c0025 a0001c0025	a0001c0025t0001 a0001c0025t0001	a0001c0025t0001g0179 a0001c0025t0001g0179	1	228	0.0044	-20	c.105 others(37): Show c.1059-809_1059-790delATATATATATATATATTTTT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	11/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT2_chr4_20246905_20625561	20518573	ATATATAT others(13): Show ATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00639.hp2 HG01074.hp1 others(3): Show HG00423.hp1 HG00639.hp2 HG01074.hp1 HG01361.hp1 HG01496.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0011 a0001c0004t0009	a0001c0001t0001g0081 a0001c0001t0004g0206 a0001c0001t0006g0082 others(3): Show a0001c0001t0001g0081 a0001c0001t0004g0206 a0001c0001t0006g0082 a0001c0001t0011g0014 a0001c0004t0009g0149 a0001c0004t0009g0152	6	223	0.0269	-20	c.105 others(37): Show c.1059-807_1059-788delATATATATATATATTTTTTT	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	11/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT3_chr5_168656740_169306139	168755389	ATTTCTTT others(13): Show ATTTCTTTCTTTCTTTCTTTC	A A	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02622.hp1 HG02735.hp2 HG02027.hp1 HG02622.hp1 HG02735.hp2	a0002 a0002	a0002c0002 a0002c0008 a0002c0019 a0002c0002 a0002c0008 a0002c0019	a0002c0002t0017 a0002c0008t0002 a0002c0019t0001 a0002c0002t0017 a0002c0008t0002 a0002c0019t0001	a0002c0002t0017g0119 a0002c0008t0002g0020 a0002c0019t0001g0009 a0002c0002t0017g0119 a0002c0008t0002g0020 a0002c0019t0001g0009	3	12	0.2500	-20	c.168 others(39): Show c.1686-1402_1686-1383delGAAAGAAAGAAAGAAAGAAA	SLIT3	ENSG00000184347.16	transcript	ENST00000519560.6	protein_coding	16/35			chr5	TogoVar
SLIT3_chr5_168656740_169306139	169015931	AACACACA others(13): Show AACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02976.hp1 HG03139.hp2 others(2): Show HG02895.hp1 HG02976.hp1 HG03139.hp2 HG03225.hp2 HG03516.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0010 a0002c0002 a0002c0018 others(2): Show a0001c0010 a0002c0002 a0002c0018 a0002c0019 a0004c0039	a0001c0010t0035 a0002c0002t0023 a0002c0018t0019 others(2): Show a0001c0010t0035 a0002c0002t0023 a0002c0018t0019 a0002c0019t0001 a0004c0039t0006	a0001c0010t0035g0103 a0002c0002t0023g0086 a0002c0018t0019g0126 others(2): Show a0001c0010t0035g0103 a0002c0002t0023g0086 a0002c0018t0019g0126 a0002c0019t0001g0011 a0004c0039t0006g0087	5	54	0.0926	-20	c.414 others(41): Show c.414-132615_414-132596delGTGTGTGTGTGTGTGTGTGT	SLIT3	ENSG00000184347.16	transcript	ENST00000519560.6	protein_coding	4/35			chr5	TogoVar
SLIT3_chr5_168656740_169306139	169189527	GATATATA others(13): Show GATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01255.hp2 HG01934.hp1 others(12): Show HG00408.hp1 HG01255.hp2 HG01934.hp1 HG02071.hp1 HG02071.hp2 HG02109.hp2 HG02895.hp1 HG02922.hp2 HG02965.hp1 HG03098.hp2 HG03209.hp2 NA18747.hp1 NA18747.hp2 NA19060.hp1 NA20805.hp2	a0001 a0002 a0013 others(1): Show a0001 a0002 a0013 a0014	a0001c0001 a0001c0003 a0001c0004 others(10): Show a0001c0001 a0001c0003 a0001c0004 a0001c0006 a0001c0007 a0001c0014 a0001c0041 a0002c0002 a0002c0005 a0002c0018 a0002c0053 a0013c0027 a0014c0064	a0001c0001t0001 a0001c0001t0003 a0001c0003t0031 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0003t0031 a0001c0004t0010 a0001c0006t0033 a0001c0007t0001 a0001c0007t0003 a0001c0014t0009 a0001c0041t0001 a0002c0002t0034 a0002c0005t0003 a0002c0018t0019 a0002c0053t0003 a0013c0027t0010 a0014c0064t0014	a0001c0001t0001g0072 a0001c0001t0003g0110 a0001c0003t0031g0026 others(12): Show a0001c0001t0001g0072 a0001c0001t0003g0110 a0001c0003t0031g0026 a0001c0004t0010g0131 a0001c0006t0033g0120 a0001c0007t0001g0040 a0001c0007t0003g0124 a0001c0014t0009g0121 a0001c0041t0001g0053 a0002c0002t0034g0111 a0002c0005t0003g0118 a0002c0018t0019g0126 a0002c0053t0003g0123 a0013c0027t0010g0125 a0014c0064t0014g0024	15	28	0.5357	-20	c.413 others(37): Show c.413+3932_413+3951delATATATATATATATATATAT	SLIT3	ENSG00000184347.16	transcript	ENST00000519560.6	protein_coding	4/35			chr5	TogoVar
SLIT3_chr5_168656740_169306139	169207370	TACACACA others(13): Show TACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA18989.hp1 NA18989.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0002 a0001c0006t0002	a0001c0006t0002g0043 a0001c0006t0002g0043	1	81	0.0123	-20	c.342 others(39): Show c.342-13840_342-13821delGTGTGTGTGTGTGTGTGTGT	SLIT3	ENSG00000184347.16	transcript	ENST00000519560.6	protein_coding	3/35			chr5	TogoVar
SLMAP_chr3_57751309_57935003	57771143	TCTCCCCT others(13): Show TCTCCCCTCCCCTCCCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0305 a0001c0001t0033g0305	1	70	0.0143	-20	c.198 others(39): Show c.198+13313_198+13332delCCCTCCCCTCCCCTCCCCTC	SLMAP	ENSG00000163681.17	transcript	ENST00000671191.1	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
SLMAP_chr3_57751309_57935003	57853955	TTATATAT others(13): Show TTATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0184 a0001c0001t0005g0184	1	69	0.0145	-20	c.520 others(37): Show c.520-3752_520-3733delATATATATATATATATATAT	SLMAP	ENSG00000163681.17	transcript	ENST00000671191.1	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
SLMAP_chr3_57751309_57935003	57880169	TTTTTGTT others(13): Show TTTTTGTTTTGTTTTGTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0297 a0001c0002t0001g0297	1	136	0.0074	-20	c.130 others(39): Show c.1300+8499_1300+8518delTTGTTTTGTTTTGTTTTGTT	SLMAP	ENSG00000163681.17	transcript	ENST00000671191.1	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
SLX4IP_chr20_10430305_10633030	10431527	AAAACCAA others(13): Show AAAACCAAACCAAACCAAACC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18954.hp2 NA18969.hp1 NA18954.hp2 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0233 a0001c0001t0001g0241 a0001c0001t0001g0233 a0001c0001t0001g0241	2	131	0.0153	-20	c.-39 others(31): Show c.-3955_-3936delAAACCAAACCAAACCAAACC	SLX4IP	ENSG00000149346.15	transcript	ENST00000334534.10	protein_coding		3777		chr20	TogoVar
SLX4IP_chr20_10430305_10633030	10455579	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00621.hp1 HG00621.hp2 others(92): Show HG00323.hp1 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00738.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp2 HG01123.hp1 HG01123.hp2 HG01168.hp2 HG01169.hp2 HG01243.hp1 HG01255.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01517.hp1 HG01517.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01975.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02056.hp1 HG02056.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02523.hp1 HG02559.hp1 HG02602.hp2 HG02647.hp1 HG02647.hp2 HG02723.hp1 HG02738.hp1 HG02965.hp1 HG02965.hp2 HG03017.hp1 HG03017.hp2 HG03098.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03491.hp1 HG03540.hp1 HG03669.hp1 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18747.hp1 NA18951.hp1 NA18954.hp2 NA18965.hp2 NA18969.hp1 NA18972.hp1 NA18972.hp2 NA18977.hp2 NA18979.hp1 NA19002.hp2 NA19010.hp2 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19056.hp2 NA19060.hp2 NA19082.hp1 NA19082.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0006	a0001c0001 a0001c0008 a0001c0011 others(5): Show a0001c0001 a0001c0008 a0001c0011 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(38): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0001t0025 a0001c0001t0026 a0001c0001t0028 a0001c0001t0037 a0001c0001t0040 a0001c0001t0041 a0001c0001t0047 a0001c0001t0049 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0056 a0001c0001t0058 a0001c0001t0061 a0001c0008t0007 a0001c0011t0010 a0002c0002t0005 a0002c0002t0032 a0003c0003t0007 a0003c0003t0019 a0004c0004t0054 a0005c0005t0017 a0006c0009t0028	a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0014 others(92): Show a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0025 a0001c0001t0001g0033 a0001c0001t0001g0037 a0001c0001t0001g0233 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0241 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0002g0003 a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0007 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0035 a0001c0001t0002g0232 a0001c0001t0002g0234 a0001c0001t0002g0251 a0001c0001t0002g0257 a0001c0001t0002g0259 a0001c0001t0003g0026 a0001c0001t0003g0217 a0001c0001t0003g0228 a0001c0001t0003g0247 a0001c0001t0003g0248 a0001c0001t0003g0263 a0001c0001t0004g0001 a0001c0001t0004g0021 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0038 a0001c0001t0004g0258 a0001c0001t0004g0261 a0001c0001t0006g0013 a0001c0001t0006g0220 a0001c0001t0007g0230 a0001c0001t0007g0231 a0001c0001t0009g0203 a0001c0001t0011g0024 a0001c0001t0011g0034 a0001c0001t0011g0236 a0001c0001t0012g0238 a0001c0001t0012g0240 a0001c0001t0013g0227 a0001c0001t0014g0225 a0001c0001t0015g0002 a0001c0001t0015g0004 a0001c0001t0015g0011 a0001c0001t0015g0260 a0001c0001t0016g0040 a0001c0001t0018g0223 a0001c0001t0019g0022 a0001c0001t0020g0020 a0001c0001t0022g0221 a0001c0001t0022g0222 a0001c0001t0022g0229 a0001c0001t0023g0031 a0001c0001t0025g0245 a0001c0001t0025g0246 a0001c0001t0026g0219 a0001c0001t0028g0226 a0001c0001t0037g0239 a0001c0001t0040g0029 a0001c0001t0041g0039 a0001c0001t0047g0255 a0001c0001t0049g0030 a0001c0001t0051g0256 a0001c0001t0052g0206 a0001c0001t0053g0208 a0001c0001t0056g0218 a0001c0001t0058g0262 a0001c0001t0061g0023 a0001c0008t0007g0015 a0001c0011t0010g0224 a0002c0002t0005g0032 a0002c0002t0005g0036 a0002c0002t0005g0244 a0002c0002t0005g0250 a0002c0002t0032g0243 a0003c0003t0007g0009 a0003c0003t0019g0008 a0004c0004t0054g0209 a0005c0005t0017g0242 a0005c0005t0017g0249 a0005c0005t0017g0254 a0006c0009t0028g0207	95	102	0.9314	-20	c.-29 others(37): Show c.-29-2569_-29-2550delATTTATTTATTTATTTATTT	SLX4IP	ENSG00000149346.15	transcript	ENST00000334534.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLX4IP_chr20_10430305_10633030	10512776	CTCTATAT others(13): Show CTCTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02280.hp2 HG03453.hp1 others(1): Show HG00639.hp2 HG02280.hp2 HG03453.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0051 a0001c0001t0009g0052 a0001c0001t0009g0161 others(1): Show a0001c0001t0009g0051 a0001c0001t0009g0052 a0001c0001t0009g0161 a0001c0001t0009g0203	4	85	0.0471	-20	c.28- others(37): Show c.28-43453_28-43434delCTATATATATATATATATAT	SLX4IP	ENSG00000149346.15	transcript	ENST00000334534.10	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLX4IP_chr20_10430305_10633030	10518490	TTTCCTTC others(13): Show TTTCCTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02280.hp2 HG02717.hp1 others(6): Show HG00639.hp2 HG02280.hp2 HG02717.hp1 HG03041.hp2 HG03453.hp1 HG03486.hp1 NA18522.hp2 NA18747.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 others(2): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0035 a0001c0006t0024	a0001c0001t0004g0028 a0001c0001t0006g0013 a0001c0001t0009g0051 others(6): Show a0001c0001t0004g0028 a0001c0001t0006g0013 a0001c0001t0009g0051 a0001c0001t0009g0052 a0001c0001t0009g0161 a0001c0001t0009g0203 a0001c0001t0035g0060 a0001c0006t0024g0048 a0001c0006t0024g0180	9	48	0.1875	-20	c.28- others(37): Show c.28-37698_28-37679delCCTTCCTTCCTTCCTTCCTT	SLX4IP	ENSG00000149346.15	transcript	ENST00000334534.10	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLX9_chr21_44935029_44981973	44979395	GTGCCGCG others(13): Show GTGCCGCGGAAGGGAGGAGGA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0064	1	332	0.0030	-20	c.25 others(31): Show c.2593_*2612delTGCCGCGGAAGGGAGGAGGA	SLX9	ENSG00000160256.14	transcript	ENST00000291634.11	protein_coding		2423		chr21	TogoVar
SLX9_chr21_44935029_44981973	44979429	AGGAGGGT others(13): Show AGGAGGGTGCCGCGGAAGGGC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0211 a0002c0002t0001g0211	1	332	0.0030	-20	c.26 others(31): Show c.2627_*2646delGGAGGGTGCCGCGGAAGGGC	SLX9	ENSG00000160256.14	transcript	ENST00000291634.11	protein_coding		2457		chr21	TogoVar
SMAD2_chr18_47803957_47935659	47820896	TACACACA others(13): Show TACACACACACACACACACAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00423.hp1 others(122): Show HG00140.hp1 HG00323.hp2 HG00423.hp1 HG00438.hp1 HG00558.hp1 HG00558.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp2 HG00741.hp2 HG01069.hp2 HG01074.hp2 HG01081.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp2 HG01169.hp1 HG01243.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01361.hp1 HG01496.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp1 HG02015.hp1 HG02040.hp1 HG02040.hp2 HG02071.hp1 HG02074.hp1 HG02129.hp1 HG02135.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02486.hp2 HG02523.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02647.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG03130.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03834.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04228.hp2 NA18906.hp2 NA18942.hp2 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18949.hp1 NA18950.hp1 NA18950.hp2 NA18954.hp2 NA18959.hp1 NA18959.hp2 NA18960.hp2 NA18968.hp2 NA18970.hp2 NA18971.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp2 NA18984.hp1 NA18986.hp2 NA18988.hp1 NA18989.hp1 NA18990.hp2 NA18994.hp2 NA18997.hp1 NA18999.hp1 NA19002.hp2 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp2 NA19009.hp2 NA19011.hp2 NA19043.hp1 NA19056.hp2 NA19057.hp1 NA19058.hp1 NA19060.hp2 NA19062.hp2 NA19064.hp1 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19079.hp1 NA19080.hp2 NA19088.hp1 NA19091.hp2 NA19240.hp2 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20905.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(99): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0024 a0001c0001t0025 a0001c0001t0038 a0001c0001t0045 a0001c0001t0046 a0001c0001t0049 a0001c0001t0050 a0001c0001t0052 a0001c0001t0061 a0001c0001t0062 a0001c0001t0063 a0001c0001t0069 a0001c0001t0070 a0001c0001t0071 a0001c0001t0072 a0001c0001t0073 a0001c0001t0074 a0001c0001t0075 a0001c0001t0078 a0001c0001t0079 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085 a0001c0001t0086 a0001c0001t0088 a0001c0001t0089 a0001c0001t0090 a0001c0001t0091 a0001c0001t0092 a0001c0001t0093 a0001c0001t0094 a0001c0001t0095 a0001c0001t0096 a0001c0001t0097 a0001c0001t0098 a0001c0001t0099 a0001c0001t0100 a0001c0001t0101 a0001c0001t0102 a0001c0001t0103 a0001c0001t0104 a0001c0001t0105 a0001c0001t0106 a0001c0001t0107 a0001c0001t0108 a0001c0001t0109 a0001c0001t0110 a0001c0001t0111 a0001c0001t0112 a0001c0001t0113 a0001c0001t0115 a0001c0001t0116 a0001c0001t0117 a0001c0001t0118 a0001c0001t0121 a0001c0001t0122 a0001c0001t0123 a0001c0001t0124 a0001c0001t0125 a0001c0001t0126 a0001c0001t0127 a0001c0001t0128 a0001c0001t0129 a0001c0001t0130 a0001c0001t0131 a0001c0001t0132 a0001c0001t0133 a0001c0001t0134 a0001c0001t0136 a0001c0001t0137 a0001c0001t0138 a0001c0001t0140 a0001c0001t0141 a0001c0001t0142 a0001c0001t0143 a0001c0001t0144 a0001c0001t0145 a0001c0001t0146 a0001c0001t0147 a0001c0001t0148 a0001c0001t0173 a0001c0001t0182 a0001c0001t0183 a0001c0001t0203 a0001c0001t0216 a0001c0001t0247	a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0204 others(122): Show a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0204 a0001c0001t0001g0252 a0001c0001t0001g0258 a0001c0001t0001g0265 a0001c0001t0001g0273 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0005g0262 a0001c0001t0005g0269 a0001c0001t0005g0286 a0001c0001t0006g0210 a0001c0001t0006g0223 a0001c0001t0006g0232 a0001c0001t0007g0134 a0001c0001t0013g0221 a0001c0001t0013g0229 a0001c0001t0015g0246 a0001c0001t0015g0268 a0001c0001t0016g0292 a0001c0001t0017g0199 a0001c0001t0018g0176 a0001c0001t0018g0272 a0001c0001t0019g0116 a0001c0001t0019g0284 a0001c0001t0020g0220 a0001c0001t0020g0233 a0001c0001t0021g0113 a0001c0001t0021g0205 a0001c0001t0022g0208 a0001c0001t0022g0271 a0001c0001t0024g0182 a0001c0001t0024g0186 a0001c0001t0025g0189 a0001c0001t0025g0190 a0001c0001t0038g0264 a0001c0001t0045g0248 a0001c0001t0046g0249 a0001c0001t0049g0251 a0001c0001t0050g0241 a0001c0001t0052g0217 a0001c0001t0061g0212 a0001c0001t0062g0209 a0001c0001t0063g0294 a0001c0001t0069g0293 a0001c0001t0070g0181 a0001c0001t0071g0185 a0001c0001t0072g0216 a0001c0001t0073g0290 a0001c0001t0074g0285 a0001c0001t0075g0086 a0001c0001t0078g0256 a0001c0001t0079g0237 a0001c0001t0080g0254 a0001c0001t0081g0270 a0001c0001t0082g0260 a0001c0001t0083g0274 a0001c0001t0084g0219 a0001c0001t0085g0240 a0001c0001t0086g0257 a0001c0001t0088g0198 a0001c0001t0089g0243 a0001c0001t0090g0263 a0001c0001t0091g0297 a0001c0001t0092g0201 a0001c0001t0093g0280 a0001c0001t0094g0261 a0001c0001t0095g0250 a0001c0001t0096g0288 a0001c0001t0097g0247 a0001c0001t0098g0279 a0001c0001t0099g0238 a0001c0001t0100g0295 a0001c0001t0101g0177 a0001c0001t0102g0277 a0001c0001t0103g0255 a0001c0001t0104g0117 a0001c0001t0105g0211 a0001c0001t0106g0236 a0001c0001t0107g0227 a0001c0001t0108g0239 a0001c0001t0109g0234 a0001c0001t0110g0253 a0001c0001t0111g0226 a0001c0001t0112g0005 a0001c0001t0113g0175 a0001c0001t0115g0184 a0001c0001t0116g0180 a0001c0001t0117g0215 a0001c0001t0118g0298 a0001c0001t0121g0225 a0001c0001t0122g0218 a0001c0001t0123g0301 a0001c0001t0124g0222 a0001c0001t0125g0230 a0001c0001t0126g0231 a0001c0001t0127g0224 a0001c0001t0128g0235 a0001c0001t0129g0203 a0001c0001t0130g0178 a0001c0001t0131g0183 a0001c0001t0132g0179 a0001c0001t0133g0187 a0001c0001t0134g0259 a0001c0001t0136g0206 a0001c0001t0137g0296 a0001c0001t0138g0188 a0001c0001t0140g0291 a0001c0001t0141g0244 a0001c0001t0142g0245 a0001c0001t0143g0200 a0001c0001t0144g0287 a0001c0001t0145g0242 a0001c0001t0146g0278 a0001c0001t0147g0115 a0001c0001t0148g0191 a0001c0001t0173g0283 a0001c0001t0182g0214 a0001c0001t0183g0213 a0001c0001t0203g0061 a0001c0001t0216g0088 a0001c0001t0247g0308	125	141	0.8865	-20	c.20 others(33): Show c.20911_*20930delGTGTGTGTGTGTGTGTGTGT	SMAD2	ENSG00000175387.16	transcript	ENST00000262160.11	protein_coding	11/11	20911		chr18	TogoVar
SMAD2_chr18_47803957_47935659	47919469	TACACACA others(13): Show TACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00609.hp1 HG01109.hp1 others(43): Show HG00544.hp1 HG00609.hp1 HG01109.hp1 HG01257.hp1 HG01261.hp2 HG01358.hp1 HG01928.hp1 HG01943.hp1 HG02015.hp2 HG02056.hp2 HG02071.hp2 HG02132.hp1 HG02135.hp1 HG02148.hp2 HG02293.hp2 HG02300.hp1 HG03942.hp2 HG04115.hp2 HG04228.hp1 NA18942.hp1 NA18943.hp1 NA18945.hp2 NA18952.hp2 NA18954.hp1 NA18960.hp1 NA18962.hp2 NA18968.hp1 NA18970.hp1 NA18974.hp2 NA18979.hp1 NA18981.hp1 NA18983.hp1 NA18988.hp2 NA18989.hp2 NA19003.hp1 NA19004.hp2 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19057.hp2 NA19058.hp2 NA19062.hp1 NA19065.hp1 NA19068.hp2 NA19091.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 others(30): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0026 a0001c0001t0027 a0001c0001t0036 a0001c0001t0150 a0001c0001t0151 a0001c0001t0152 a0001c0001t0153 a0001c0001t0154 a0001c0001t0155 a0001c0001t0156 a0001c0001t0157 a0001c0001t0158 a0001c0001t0160 a0001c0001t0161 a0001c0001t0162 a0001c0001t0163 a0001c0001t0164 a0001c0001t0165 a0001c0001t0166 a0001c0001t0167 a0001c0001t0168 a0001c0001t0172 a0001c0001t0174 a0001c0001t0175 a0001c0001t0176 a0001c0001t0177 a0001c0001t0178 a0001c0001t0179 a0001c0001t0245	a0001c0001t0003g0140 a0001c0001t0003g0142 a0001c0001t0003g0148 others(42): Show a0001c0001t0003g0140 a0001c0001t0003g0142 a0001c0001t0003g0148 a0001c0001t0003g0150 a0001c0001t0003g0166 a0001c0001t0004g0126 a0001c0001t0004g0131 a0001c0001t0004g0151 a0001c0001t0004g0159 a0001c0001t0007g0134 a0001c0001t0007g0135 a0001c0001t0007g0152 a0001c0001t0008g0125 a0001c0001t0008g0147 a0001c0001t0008g0164 a0001c0001t0026g0136 a0001c0001t0026g0163 a0001c0001t0027g0002 a0001c0001t0036g0003 a0001c0001t0150g0129 a0001c0001t0151g0124 a0001c0001t0152g0146 a0001c0001t0153g0157 a0001c0001t0154g0170 a0001c0001t0155g0141 a0001c0001t0156g0153 a0001c0001t0157g0128 a0001c0001t0158g0143 a0001c0001t0160g0158 a0001c0001t0161g0154 a0001c0001t0162g0156 a0001c0001t0163g0168 a0001c0001t0164g0160 a0001c0001t0165g0139 a0001c0001t0166g0155 a0001c0001t0167g0149 a0001c0001t0168g0130 a0001c0001t0172g0161 a0001c0001t0174g0145 a0001c0001t0175g0167 a0001c0001t0176g0144 a0001c0001t0177g0165 a0001c0001t0178g0137 a0001c0001t0179g0162 a0001c0001t0245g0127	46	75	0.6133	-20	c.-54 others(39): Show c.-54+10872_-54+10891delGTGTGTGTGTGTGTGTGTGT	SMAD2	ENSG00000175387.16	transcript	ENST00000262160.11	protein_coding	1/10			chr18	TogoVar
SMAD3_chr15_67060602_67200169	67182994	AAAAAAAA others(13): Show AAAAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19074.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0260 a0001c0001t0002g0260	1	290	0.0034	-20	c.871 others(37): Show c.871+1543_871+1562delAAAAAATATATATATATATA	SMAD3	ENSG00000166949.17	transcript	ENST00000327367.9	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr15	TogoVar
SMAD3_chr15_67060602_67200169	67183015	ATATATAT others(13): Show ATATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01496.hp1 HG01433.hp2 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0002 a0001c0001t0030g0002	2	308	0.0065	-20	c.871 others(37): Show c.871+1564_871+1583delATATATATATATATATTTTT	SMAD3	ENSG00000166949.17	transcript	ENST00000327367.9	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr15	TogoVar
SMAD4_chr18_51025213_51090042	51042287	GCCTCCCT others(13): Show GCCTCCCTCCCTCCTTCCCTC	G G	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02818.hp1 HG03041.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0016 a0001c0002t0016	a0001c0002t0016g0005 a0001c0002t0016g0020 a0001c0002t0016g0005 a0001c0002t0016g0020	3	187	0.0160	-20	c.-12 others(39): Show c.-127-4619_-127-4600delTTCCCTCCCTCCCTCCCTCC	SMAD4	ENSG00000141646.16	transcript	ENST00000342988.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
SMAD4_chr18_51025213_51090042	51073384	TATATACA others(13): Show TATATACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02818.hp1 HG03041.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0016 a0001c0002t0016	a0001c0002t0016g0005 a0001c0002t0016g0020 a0001c0002t0016g0005 a0001c0002t0016g0020	3	298	0.0101	-20	c.130 others(39): Show c.1309-3252_1309-3233delTATACACACACACACACACA	SMAD4	ENSG00000141646.16	transcript	ENST00000342988.8	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
SMAD6_chr15_66697236_66787849	66718111	CGTGTGTG others(13): Show CGTGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02155.hp2 NA20805.hp2 HG02155.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0168 a0001c0001t0001g0115 a0001c0001t0001g0168	2	118	0.0169	-20	c.952 others(37): Show c.952+1634_952+1653delGTGTGTGTGTGTGTGTGTGT	SMAD6	ENSG00000137834.15	transcript	ENST00000288840.10	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr15	TogoVar
SMAGP_chr12_51239558_51275415	51248426	ACACACAC others(13): Show ACACACACACTCTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG01928.hp1 NA18947.hp1 NA18973.hp1 others(1): Show HG01928.hp1 NA18947.hp1 NA18973.hp1 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0026 a0001c0001t0002g0305 a0001c0001t0002g0321 others(1): Show a0001c0001t0002g0026 a0001c0001t0002g0305 a0001c0001t0002g0321 a0001c0001t0003g0025	4	354	0.0113	-20	c.35- others(35): Show c.35-1615_35-1596delAGAGAGAGAGAGTGTGTGTG	SMAGP	ENSG00000170545.17	transcript	ENST00000603798.6	protein_coding	2/3			chr12	TogoVar
SMAGP_chr12_51239558_51275415	51248428	ACACACAC others(13): Show ACACACACTCTCTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG01074.hp2 NA20805.hp1 HG01074.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	2	359	0.0056	-20	c.35- others(35): Show c.35-1617_35-1598delAGAGAGAGAGAGAGTGTGTG	SMAGP	ENSG00000170545.17	transcript	ENST00000603798.6	protein_coding	2/3			chr12	TogoVar
SMAGP_chr12_51239558_51275415	51248430	ACACACTC others(13): Show ACACACTCTCTCTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG02698.hp1 HG02698.hp2 others(4): Show HG00140.hp2 HG02698.hp1 HG02698.hp2 HG02895.hp1 HG03491.hp1 NA20752.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0012 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0012 a0001c0002t0013	a0001c0001t0001g0097 a0001c0001t0001g0128 a0001c0001t0001g0133 others(4): Show a0001c0001t0001g0097 a0001c0001t0001g0128 a0001c0001t0001g0133 a0001c0001t0001g0147 a0001c0001t0003g0288 a0001c0001t0012g0127 a0001c0002t0013g0269	7	351	0.0199	-20	c.35- others(35): Show c.35-1619_35-1600delAGAGAGAGAGAGAGAGTGTG	SMAGP	ENSG00000170545.17	transcript	ENST00000603798.6	protein_coding	2/3			chr12	TogoVar
SMAP1_chr6_70662883_70867003	70725093	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	NA18956.hp2 NA18982.hp1 NA20805.hp2 NA18956.hp2 NA18982.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0089 a0001c0001t0001g0211 a0001c0001t0013g0108 a0001c0001t0001g0089 a0001c0001t0001g0211 a0001c0001t0013g0108	3	7	0.4286	-20	c.119 others(37): Show c.119-7263_119-7244delTTTTTTTTTTTTTTTTTTTT	SMAP1	ENSG00000112305.15	transcript	ENST00000370455.8	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr6	TogoVar
SMAP1_chr6_70662883_70867003	70808902	CTGTGTGT others(13): Show CTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0109 a0001c0001t0010g0109	1	31	0.0323	-20	c.576 others(39): Show c.576+10185_576+10204delGTGTGTGTGTGTGTGTGTGT	SMAP1	ENSG00000112305.15	transcript	ENST00000370455.8	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr6	TogoVar
SMARCA1_chrX_129441506_129528490	129479653	ATATTTTA others(13): Show ATATTTTATTTTATTTTATTT	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00544.hp2 HG00558.hp1 others(31): Show HG00280.hp1 HG00544.hp2 HG00558.hp1 HG00609.hp1 HG00642.hp1 HG01168.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp2 HG02080.hp1 HG02083.hp1 HG02738.hp1 HG03239.hp1 HG03654.hp1 HG04228.hp1 NA18939.hp1 NA18943.hp1 NA18944.hp1 NA18950.hp2 NA18961.hp1 NA18967.hp1 NA18968.hp2 NA18974.hp1 NA18982.hp1 NA18990.hp1 NA18998.hp1 NA19000.hp1 NA19001.hp2 NA19003.hp2 NA19009.hp1 NA19058.hp1 NA19066.hp1 NA19077.hp1 NA20805.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0001 a0003c0005t0001 a0001c0001t0001 a0003c0005t0001	a0001c0001t0001g0014 a0001c0001t0001g0110 a0001c0001t0001g0126 others(30): Show a0001c0001t0001g0014 a0001c0001t0001g0110 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0175 a0001c0001t0001g0177 a0001c0001t0001g0228 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0258 a0001c0001t0001g0260 a0001c0001t0001g0261 a0003c0005t0001g0257	34	106	0.3208	-20	c.244 others(39): Show c.2442+1028_2442+1047delAAATAAAATAAAATAAAATA	SMARCA1	ENSG00000102038.16	transcript	ENST00000371121.5	protein_coding	19/24			chrX	TogoVar
SMARCA2_chr9_2010347_2198620	2035008	CTTTATTT others(13): Show CTTTATTTATTTATTTATTTA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01496.hp2 HG01928.hp1 others(2): Show HG00735.hp1 HG01496.hp2 HG01928.hp1 HG01934.hp2 HG01952.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0006 a0003c0012 a0001c0001 a0003c0006 a0003c0012	a0001c0001t0002 a0003c0006t0002 a0003c0012t0010 a0001c0001t0002 a0003c0006t0002 a0003c0012t0010	a0001c0001t0002g0211 a0001c0001t0002g0213 a0001c0001t0002g0225 others(2): Show a0001c0001t0002g0211 a0001c0001t0002g0213 a0001c0001t0002g0225 a0003c0006t0002g0210 a0003c0012t0010g0212	5	146	0.0342	-20	c.355 others(37): Show c.355+1953_355+1972delTTATTTATTTATTTATTTAT	SMARCA2	ENSG00000080503.25	transcript	ENST00000349721.8	protein_coding	3/33		INFO_REALIGN_3_PRIME	chr9	TogoVar
SMARCA2_chr9_2010347_2198620	2060118	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0238 a0001c0003t0001g0238	1	69	0.0145	-20	c.152 others(37): Show c.1522-685_1522-666delAAAAAAAAAAAAAAAAAAAA	SMARCA2	ENSG00000080503.25	transcript	ENST00000349721.8	protein_coding	8/33		INFO_REALIGN_3_PRIME	chr9	TogoVar
SMARCA4_chr19_10956030_11067273	10959647	AAAACAAA others(13): Show AAAACAAACAAACAAACAAAC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02698.hp1 HG02738.hp2 HG03942.hp1 others(1): Show HG02698.hp1 HG02738.hp2 HG03942.hp1 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0001 a0001c0011t0001 a0001c0001t0001 a0001c0011t0001	a0001c0001t0001g0275 a0001c0011t0001g0276 a0001c0011t0001g0277 others(1): Show a0001c0001t0001g0275 a0001c0011t0001g0276 a0001c0011t0001g0277 a0001c0011t0001g0278	4	23	0.1739	-20	c.-15 others(31): Show c.-1558_-1539delAAACAAACAAACAAACAAAC	SMARCA4	ENSG00000127616.22	transcript	ENST00000344626.10	protein_coding		1382		chr19	TogoVar

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