Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LDLRAD4_chr18_13213760_13657751	13234427	CCTGTCCT others(23): Show CCTGTCCTGGCCCAGCATCGGGCTGCCAGGA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00642.hp2 others(50): Show HG00099.hp1 HG00140.hp1 HG00642.hp2 HG01071.hp1 HG01071.hp2 HG01169.hp1 HG01243.hp2 HG01255.hp2 HG01261.hp2 HG01515.hp1 HG01516.hp2 HG01884.hp2 HG01952.hp2 HG01978.hp1 HG01981.hp1 HG01981.hp2 HG02055.hp1 HG02258.hp2 HG02280.hp1 HG02486.hp1 HG02486.hp2 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02809.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03579.hp2 HG03704.hp1 HG03942.hp1 NA18522.hp1 NA18945.hp2 NA18948.hp2 NA18977.hp2 NA18980.hp2 NA19057.hp2 NA20129.hp1 NA20300.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(28): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0021 a0001c0001t0023 a0001c0001t0025 a0001c0001t0027 a0001c0001t0028 a0001c0001t0032 a0001c0001t0034 a0001c0001t0037 a0001c0001t0038 a0001c0001t0045 a0001c0001t0048 a0001c0001t0051 a0001c0001t0056 a0001c0001t0059 a0001c0001t0067 a0001c0001t0069 a0001c0002t0014 a0002c0004t0004	a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0089 others(50): Show a0001c0001t0001g0013 a0001c0001t0001g0065 a0001c0001t0001g0089 a0001c0001t0001g0097 a0001c0001t0001g0126 a0001c0001t0001g0141 a0001c0001t0001g0146 a0001c0001t0002g0056 a0001c0001t0002g0058 a0001c0001t0002g0062 a0001c0001t0002g0090 a0001c0001t0002g0101 a0001c0001t0002g0109 a0001c0001t0002g0149 a0001c0001t0002g0151 a0001c0001t0002g0163 a0001c0001t0003g0034 a0001c0001t0003g0130 a0001c0001t0003g0145 a0001c0001t0003g0147 a0001c0001t0003g0154 a0001c0001t0004g0057 a0001c0001t0004g0153 a0001c0001t0005g0128 a0001c0001t0005g0177 a0001c0001t0006g0103 a0001c0001t0006g0176 a0001c0001t0007g0073 a0001c0001t0007g0142 a0001c0001t0008g0108 a0001c0001t0010g0099 a0001c0001t0012g0079 a0001c0001t0013g0143 a0001c0001t0015g0086 a0001c0001t0017g0088 a0001c0001t0021g0150 a0001c0001t0023g0093 a0001c0001t0025g0106 a0001c0001t0027g0069 a0001c0001t0028g0144 a0001c0001t0032g0122 a0001c0001t0034g0102 a0001c0001t0037g0098 a0001c0001t0038g0012 a0001c0001t0045g0011 a0001c0001t0048g0041 a0001c0001t0051g0077 a0001c0001t0056g0059 a0001c0001t0059g0131 a0001c0001t0067g0173 a0001c0001t0069g0172 a0001c0002t0014g0123 a0002c0004t0004g0148	53	178	0.2978	-30	c.-46 others(51): Show c.-467+15444_-467+15473delCCTGGCCCAGCATCGGGCTGCCAG GACTGT		LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	1/6					INFO_REALIGN_3_PRIME	chr18	TogoVar
LDLRAD4_chr18_13213760_13657751	13262622	ACTGAGTC others(23): Show ACTGAGTCCCGTGCGGCTCCGTGCGTTGGGG	A A	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0030 a0001c0001t0002g0030	1	178	0.0056	-30	c.-46 others(51): Show c.-466-15466_-466-15437delTCCGTGCGTTGGGGCTGAGTCCCG TGCGGC		LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	1/6					INFO_REALIGN_3_PRIME	chr18	TogoVar
LDLRAD4_chr18_13213760_13657751	13262772	GCTGAGTC others(23): Show GCTGAGTCCCGTGCGGCTCTGTGCGTGGAAA	G G	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0034 a0001c0001t0003g0034	1	178	0.0056	-30	c.-46 others(51): Show c.-466-15314_-466-15285delTGTGCGTGGAAACTGAGTCCCGTG CGGCTC		LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	1/6					INFO_REALIGN_3_PRIME	chr18	TogoVar
LDLRAD4_chr18_13213760_13657751	13262798	GGAAACTG others(23): Show GGAAACTGAGTCCCGTGCGGCTCCGTGCGTT	G G	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0002	1	178	0.0056	-30	c.-46 others(51): Show c.-466-15305_-466-15276delAAACTGAGTCCCGTGCGGCTCCGT GCGTTG		LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	1/6					INFO_REALIGN_3_PRIME	chr18	TogoVar
LDLRAD4_chr18_13213760_13657751	13262858	TGGGGCTG others(23): Show TGGGGCTGAGTCCCGTGCGGCCCTGTGCGTG	T T	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG03704.hp2 HG03942.hp1 HG01255.hp1 HG03704.hp2 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0107 a0001c0001t0002g0139 a0001c0001t0002g0151 a0001c0001t0002g0107 a0001c0001t0002g0139 a0001c0001t0002g0151	3	178	0.0169	-30	c.-46 others(51): Show c.-466-15166_-466-15137delCCTGTGCGTGGGGGCTGAGTCCCG TGCGGC		LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	1/6					INFO_REALIGN_3_PRIME	chr18	TogoVar
LEF1_chr4_108042548_108173932	108167351	TACACACA others(23): Show TACACACACACACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0010 a0001c0001t0002g0010	1	264	0.0038	-30	c.213 others(45): Show c.213+174_213+203delGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT		LEF1	ENSG00000138795.10	transcript	ENST00000265165.6	protein_coding	1/11						chr4	TogoVar
LEKR1_chr3_156821353_157051129	156899746	GCATATAT others(23): Show GCATATATACACATATACATGCATATATACA	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0239 a0003c0006t0001g0239	1	244	0.0041	-30	c.264 others(49): Show c.264-20812_264-20783delCATGCATATATACACATATATACACA TATA		LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	3/12					INFO_REALIGN_3_PRIME	chr3	TogoVar
LEKR1_chr3_156821353_157051129	156911224	TTTTTTCT others(23): Show TTTTTTCTCAAAAAATTTTCTTTGAGAAATA	T T	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	244	0.0041	-30	c.264 others(47): Show c.264-9345_264-9316delCTCAAAAAATTTTCTTTGAGAAATATTT TT		LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	3/12					INFO_REALIGN_3_PRIME	chr3	TogoVar
LENG8_chr19_54444199_54467016	54464124	GGTGATTT others(23): Show GGTGATTTACGAGTGCCTCTCCCCTTCTCAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0097 a0003c0004t0001g0097	1	431	0.0023	-30	c.31 others(41): Show c.3197_*3226delGTGATTTACGAGTGCCTCTCCCCTTCTCAA		LENG8	ENSG00000167615.18	transcript	ENST00000326764.10	protein_coding					2109		chr19	TogoVar
LENG9_chr19_54456732_54468778	54464124	GGTGATTT others(23): Show GGTGATTTACGAGTGCCTCTCCCCTTCTCAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0013 a0003c0003t0013	a0003c0003t0013g0000 a0003c0003t0013g0000	1	421	0.0024	-30	c.-62 others(39): Show c.-628_-599delTTGAGAAGGGGAGAGGCACTCGTAAATCAC		LENG9	ENSG00000275183.2	transcript	ENST00000611161.2	protein_coding					347		chr19	TogoVar
LEPR_chr1_65415668_65646559	65518893	CTTTCTTT others(23): Show CTTTCTTTCTTTCTTTCTTTCTTTCTCTCTT	C C	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0191 a0001c0001t0002g0191	1	216	0.0046	-30	c.-20 others(49): Show c.-20-46651_-20-46622delTTCTTTCTTTCTTTCTTTCTTTCTCT CTTT		LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19					INFO_REALIGN_3_PRIME	chr1	TogoVar
LGMN_chr14_92698809_92753627	92719219	ACACCACC others(23): Show ACACCACCACCGCCACCGCCACCACCGCCAC	A A	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03130.hp2 HG02258.hp2 HG03130.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0003 a0006c0010t0003	a0006c0010t0003g0027 a0006c0010t0003g0091 a0006c0010t0003g0027 a0006c0010t0003g0091	2	420	0.0048	-30	c.139 others(45): Show c.139-405_139-376delGTGGCGGTGGTGGCGGTGGCGGTGGTGGTG		LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13						chr14	TogoVar
LGMN_chr14_92698809_92753627	92719239	ACCACCGC others(23): Show ACCACCGCCACCACCACCACCGCCACCGCCG	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 NA21309.hp1 HG03239.hp2 NA21309.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0013 a0001c0001 a0005c0013	a0001c0001t0001 a0005c0013t0001 a0001c0001t0001 a0005c0013t0001	a0001c0001t0001g0109 a0005c0013t0001g0160 a0001c0001t0001g0109 a0005c0013t0001g0160	2	420	0.0048	-30	c.139 others(45): Show c.139-425_139-396delCGGCGGTGGCGGTGGTGGTGGTGGCGGTGG		LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13						chr14	TogoVar
LGMN_chr14_92698809_92753627	92719272	GCCGCCAC others(23): Show GCCGCCACCGCCGCCGCCGCCGCCGCCGCCA	G G	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00423.hp2 HG01069.hp2 others(25): Show HG00280.hp1 HG00423.hp2 HG01069.hp2 HG01071.hp2 HG01243.hp2 HG01884.hp1 HG01993.hp1 HG02040.hp2 HG02132.hp1 HG02155.hp1 HG02300.hp2 HG02602.hp2 HG03239.hp1 NA18944.hp2 NA18945.hp2 NA18964.hp2 NA18965.hp2 NA18966.hp2 NA18967.hp1 NA18970.hp1 NA18985.hp2 NA18988.hp1 NA18993.hp2 NA18999.hp1 NA19000.hp1 NA19002.hp1 NA19060.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0019 a0001c0001t0001g0053 a0001c0001t0001g0057 others(25): Show a0001c0001t0001g0019 a0001c0001t0001g0053 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0103 a0001c0001t0001g0123 a0001c0001t0001g0131 a0001c0001t0001g0168 a0001c0001t0001g0172 a0001c0001t0001g0210 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0231 a0001c0001t0001g0278 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0307 a0001c0001t0001g0320 a0001c0001t0001g0327 a0001c0001t0001g0338 a0001c0001t0001g0356 a0002c0003t0001g0069 a0002c0003t0001g0071 a0002c0003t0001g0072 a0002c0003t0001g0078	28	420	0.0667	-30	c.139 others(45): Show c.139-458_139-429delTGGCGGCGGCGGCGGCGGCGGCGGTGGCGG		LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13						chr14	TogoVar
LGMN_chr14_92698809_92753627	92719296	GCCGCCAC others(23): Show GCCGCCACCGCCGCCACCGCCGCCGCCGCCA	G G	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18960.hp1 NA18962.hp1 others(5): Show NA18950.hp2 NA18960.hp1 NA18962.hp1 NA18963.hp1 NA18969.hp1 NA18982.hp2 NA18983.hp1 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0293 a0001c0001t0001g0297 a0001c0001t0001g0303 others(5): Show a0001c0001t0001g0293 a0001c0001t0001g0297 a0001c0001t0001g0303 a0001c0001t0001g0337 a0001c0001t0001g0357 a0001c0001t0001g0365 a0001c0001t0001g0394 a0001c0001t0001g0404	8	420	0.0191	-30	c.139 others(45): Show c.139-482_139-453delTGGCGGCGGCGGCGGTGGCGGCGGTGGCGG		LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13						chr14	TogoVar
LGMN_chr14_92698809_92753627	92719309	CCACCGCC others(23): Show CCACCGCCGCCGCCGCCACCGCCACCGCCAT	C C	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00558.hp1 HG00558.hp2 others(47): Show HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00733.hp1 HG01071.hp1 HG01106.hp2 HG01981.hp2 HG02055.hp1 HG02080.hp2 HG02083.hp2 HG02135.hp2 HG02165.hp2 HG02280.hp1 HG02523.hp1 HG02523.hp2 HG02622.hp1 HG02683.hp1 HG02723.hp2 HG02735.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp2 HG02970.hp1 HG02970.hp2 HG03209.hp2 HG03654.hp2 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03927.hp2 HG06807.hp2 NA18747.hp1 NA18939.hp2 NA18943.hp1 NA18947.hp1 NA18956.hp2 NA18959.hp1 NA18970.hp2 NA18986.hp1 NA18988.hp2 NA18999.hp2 NA19009.hp1 NA19043.hp1 NA19082.hp2 NA19084.hp1 NA19088.hp2 NA19090.hp2 NA20129.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0019 others(1): Show a0001c0001 a0001c0002 a0001c0019 a0002c0003	a0001c0001t0001 a0001c0002t0001 a0001c0019t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0019t0001 a0002c0003t0001	a0001c0001t0001g0016 a0001c0001t0001g0021 a0001c0001t0001g0022 others(47): Show a0001c0001t0001g0016 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0061 a0001c0001t0001g0095 a0001c0001t0001g0101 a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0139 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0173 a0001c0001t0001g0236 a0001c0001t0001g0276 a0001c0001t0001g0279 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0291 a0001c0001t0001g0308 a0001c0001t0001g0333 a0001c0001t0001g0373 a0001c0001t0001g0382 a0001c0001t0001g0401 a0001c0002t0001g0310 a0001c0019t0001g0374 a0002c0003t0001g0035 a0002c0003t0001g0048 a0002c0003t0001g0051 a0002c0003t0001g0065 a0002c0003t0001g0067 a0002c0003t0001g0068 a0002c0003t0001g0075 a0002c0003t0001g0080 a0002c0003t0001g0081 a0002c0003t0001g0085 a0002c0003t0001g0090 a0002c0003t0001g0098 a0002c0003t0001g0119 a0002c0003t0001g0128 a0002c0003t0001g0145 a0002c0003t0001g0191 a0002c0003t0001g0312 a0002c0003t0001g0315 a0002c0003t0001g0330	50	420	0.1191	-30	c.139 others(45): Show c.139-495_139-466delATGGCGGTGGCGGTGGCGGCGGCGGCGGTG		LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13						chr14	TogoVar
LHFPL6_chr13_39337892_39608193	39391715	CTGATATG others(23): Show CTGATATGCACCATCAATACGGTGGTACAGG	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00735.hp1 HG01070.hp1 others(12): Show HG00140.hp1 HG00735.hp1 HG01070.hp1 HG01261.hp2 HG01433.hp2 HG02056.hp1 HG02056.hp2 HG02109.hp2 HG03471.hp2 HG03579.hp1 HG04199.hp2 NA18988.hp1 NA19030.hp1 NA19043.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0018 a0001c0001t0020	a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0003g0041 others(12): Show a0001c0001t0001g0107 a0001c0001t0001g0109 a0001c0001t0003g0041 a0001c0001t0003g0097 a0001c0001t0003g0137 a0001c0001t0003g0181 a0001c0001t0004g0100 a0001c0001t0005g0036 a0001c0001t0005g0078 a0001c0001t0006g0209 a0001c0001t0008g0108 a0001c0001t0008g0127 a0001c0001t0009g0156 a0001c0001t0018g0239 a0001c0001t0020g0003	15	242	0.0620	-30	c.386 others(49): Show c.386-13219_386-13190delCCTGTACCACCGTATTGATGGTGCAT ATCA		LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3						chr13	TogoVar
LHPP_chr10_124456823_124619141	124457197	ATTTCTTT others(23): Show ATTTCTTTCTTTCTTTCTTTCTTTTTCTTTC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG02559.hp1 HG01891.hp2 HG02559.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0005 a0003c0003t0005	a0003c0003t0005g0255 a0003c0003t0005g0256 a0003c0003t0005g0255 a0003c0003t0005g0256	2	260	0.0077	-30	c.-46 others(41): Show c.-4665_-4636delTTTCTTTCTTTCTTTCTTTCTTTTTCTTTC		LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding					4625		chr10	TogoVar
LIAT1_chr17_405325_419666	413473	GGCCCTCA others(23): Show GGCCCTCAAGGGCTTCCACCCCGACCCCGAC	G G	disruptive_inframe_deletion disruptive_inframe_deletion	MODERATE	HG02922.hp1 HG02922.hp1	a0037 a0037	a0037c0031 a0037c0031	a0037c0031t0001 a0037c0031t0001	a0037c0031t0001g0032 a0037c0031t0001g0032	1	434	0.0023	-30	c.660 others(37): Show c.660_689delCGCCCTCAAGGGCTTCCACCCCGACCCCGA	p.Asp others(13): Show p.Asp220_Pro229del	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding	2/2	678/1841	660/1272	220/423		INFO_REALIGN_3_PRIME	chr17	TogoVar
LIAT1_chr17_405325_419666	413566	CCTCAAGG others(23): Show CCTCAAGGGCATCCACCCCGACCCCGAGGCT	C C	conservative_inframe_deletion conservative_inframe_deletion	MODERATE	HG03130.hp1 HG03130.hp1	a0038 a0038	a0038c0030 a0038c0030	a0038c0030t0003 a0038c0030t0003	a0038c0030t0003g0002 a0038c0030t0003g0002	1	434	0.0023	-30	c.733 others(37): Show c.733_762delATCCACCCCGACCCCGAGGCTCTCAAGGGC	p.Ile others(13): Show p.Ile245_Gly254del	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding	2/2	751/1841	733/1272	245/423		INFO_REALIGN_3_PRIME	chr17	TogoVar
LIAT1_chr17_405325_419666	413620	CGAGGCCC others(23): Show CGAGGCCCTCAAGGGCTTCCACCCCGACCCT	C C	disruptive_inframe_deletion disruptive_inframe_deletion	MODERATE	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(68): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00558.hp2 HG01243.hp2 HG01346.hp1 HG01346.hp2 HG01884.hp2 HG01891.hp1 HG02015.hp2 HG02145.hp1 HG02280.hp2 HG02486.hp2 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02965.hp2 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03471.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03831.hp2 HG04115.hp1 HG04199.hp1 HG04199.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18522.hp2 NA18939.hp2 NA18950.hp1 NA18957.hp1 NA18961.hp2 NA18964.hp1 NA18968.hp2 NA18969.hp1 NA18994.hp1 NA19007.hp1 NA19043.hp2 NA19063.hp2 NA19082.hp2 NA19088.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp2	a0003 a0010 a0011 others(4): Show a0003 a0010 a0011 a0020 a0029 a0030 a0031	a0003c0003 a0003c0043 a0010c0009 others(5): Show a0003c0003 a0003c0043 a0010c0009 a0011c0012 a0020c0022 a0029c0039 a0030c0038 a0031c0037	a0003c0003t0001 a0003c0043t0001 a0010c0009t0001 others(5): Show a0003c0003t0001 a0003c0043t0001 a0010c0009t0001 a0011c0012t0001 a0020c0022t0001 a0029c0039t0001 a0030c0038t0001 a0031c0037t0001	a0003c0003t0001g0003 a0003c0003t0001g0037 a0003c0003t0001g0039 others(8): Show a0003c0003t0001g0003 a0003c0003t0001g0037 a0003c0003t0001g0039 a0003c0003t0001g0040 a0003c0043t0001g0003 a0010c0009t0001g0003 a0011c0012t0001g0003 a0020c0022t0001g0003 a0029c0039t0001g0003 a0030c0038t0001g0003 a0031c0037t0001g0003	71	434	0.1636	-30	c.792 others(37): Show c.792_821delCTTCCACCCCGACCCTGAGGCCCTCAAGGG	p.Phe others(13): Show p.Phe265_Gly274del	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding	2/2	810/1841	792/1272	264/423		INFO_REALIGN_3_PRIME	chr17	TogoVar
LIAT1_chr17_405325_419666	413771	AAGGCCCT others(23): Show AAGGCCCTCAAGGGTTTCCACACTGACCCCG	A A	disruptive_inframe_deletion disruptive_inframe_deletion	MODERATE	HG02559.hp1 NA18971.hp1 HG02559.hp1 NA18971.hp1	a0024 a0041 a0024 a0041	a0024c0028 a0041c0023 a0024c0028 a0041c0023	a0024c0028t0001 a0041c0023t0001 a0024c0028t0001 a0041c0023t0001	a0024c0028t0001g0002 a0041c0023t0001g0002 a0024c0028t0001g0002 a0041c0023t0001g0002	2	434	0.0046	-30	c.942 others(37): Show c.942_971delTTTCCACACTGACCCCGAGGCCCTCAAGGG	p.Phe others(13): Show p.Phe315_Gly324del	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding	2/2	960/1841	942/1272	314/423		INFO_REALIGN_3_PRIME	chr17	TogoVar
LIAT1_chr17_405325_419666	413801	GAGGCCCT others(23): Show GAGGCCCTCAAGGGCTTCCACCCCGACCCCA	G G	conservative_inframe_deletion conservative_inframe_deletion	MODERATE	HG04115.hp1 HG04115.hp1	a0029 a0029	a0029c0039 a0029c0039	a0029c0039t0001 a0029c0039t0001	a0029c0039t0001g0003 a0029c0039t0001g0003	1	434	0.0023	-30	c.988 others(38): Show c.988_1017delAAGGCCCTCAAGGGCTTCCACCCCGACCCC	p.Lys others(13): Show p.Lys330_Pro339del	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding	2/2	1006/1841	988/1272	330/423		INFO_REALIGN_3_PRIME	chr17	TogoVar
LIFR_chr5_38469668_38561646	38553622	CTATATAT others(23): Show CTATATATATATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02622.hp1 HG03139.hp1 others(5): Show HG02615.hp1 HG02622.hp1 HG03139.hp1 HG03704.hp1 HG03834.hp1 HG03942.hp1 HG04199.hp2 NA18522.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0008 a0005c0005t0011 a0001c0001t0008 a0005c0005t0011	a0001c0001t0008g0036 a0001c0001t0008g0037 a0001c0001t0008g0038 others(5): Show a0001c0001t0008g0036 a0001c0001t0008g0037 a0001c0001t0008g0038 a0001c0001t0008g0039 a0005c0005t0011g0268 a0005c0005t0011g0269 a0005c0005t0011g0270 a0005c0005t0011g0271	8	374	0.0214	-30	c.-20 others(47): Show c.-20+2682_-20+2711delTATATATATATATATATATATATATATA TA		LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	1/19						chr5	TogoVar
LILRA5_chr19_54302070_54318166	54308335	GTATATAT others(23): Show GTATATATATGTATATATAAATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG04199.hp1 HG03453.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0119 a0001c0001t0005g0129 a0001c0001t0001g0119 a0001c0001t0005g0129	2	409	0.0049	-30	c.713 others(45): Show c.713-617_713-588delTATATATATATTTATATATACATATATATA		LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6						chr19	TogoVar
LILRA5_chr19_54302070_54318166	54308345	GTATATAT others(23): Show GTATATATAAATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp2 HG00741.hp1 others(17): Show HG00140.hp1 HG00639.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp2 HG01257.hp1 HG01496.hp2 HG02027.hp1 HG02135.hp2 HG02738.hp2 HG03017.hp1 HG03017.hp2 HG03491.hp2 HG03688.hp1 HG03688.hp2 HG04115.hp1 NA18943.hp2 NA20752.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0001c0001t0004 a0001c0001t0005 a0001c0001t0012	a0001c0001t0004g0124 a0001c0001t0005g0002 a0001c0001t0005g0122 others(1): Show a0001c0001t0004g0124 a0001c0001t0005g0002 a0001c0001t0005g0122 a0001c0001t0012g0125	20	409	0.0489	-30	c.713 others(45): Show c.713-627_713-598delTATATATATATATATATATATTTATATATA		LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6						chr19	TogoVar
LIMCH1_chr4_41533157_41705044	41574230	ATCCCCTC others(23): Show ATCCCCTCCCCTCCCCTCCCCTCCCCTCCCC	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02735.hp2 HG03209.hp2 others(5): Show HG01243.hp2 HG02735.hp2 HG03209.hp2 HG03225.hp2 HG03490.hp1 NA18906.hp2 NA19030.hp1 NA20129.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0002 a0002c0028 others(2): Show a0001c0001 a0002c0002 a0002c0028 a0003c0003 a0005c0037	a0001c0001t0001 a0002c0002t0001 a0002c0028t0006 others(4): Show a0001c0001t0001 a0002c0002t0001 a0002c0028t0006 a0003c0003t0008 a0003c0003t0021 a0003c0003t0034 a0005c0037t0007	a0001c0001t0001g0009 a0001c0001t0001g0100 a0002c0002t0001g0091 others(5): Show a0001c0001t0001g0009 a0001c0001t0001g0100 a0002c0002t0001g0091 a0002c0028t0006g0140 a0003c0003t0008g0090 a0003c0003t0021g0147 a0003c0003t0034g0148 a0005c0037t0007g0007	8	154	0.0520	-30	c.-24 others(51): Show c.-240-24647_-240-24618delCCCTCCCCTCCCCTCCCCTCCCCT CCCCTC		LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31					INFO_REALIGN_3_PRIME	chr4	TogoVar
LIME1_chr20_63731664_63744103	63740619	TCAGGGCC others(23): Show TCAGGGCCCCAGGTTTGTAATTACCAGCCAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	394	0.0025	-30	c.17 others(41): Show c.1720_*1749delCAGGGCCCCAGGTTTGTAATTACCAGCCAC		LIME1	ENSG00000203896.10	transcript	ENST00000309546.8	protein_coding					1517		chr20	TogoVar
LINGO2_chr9_27932617_29218601	27937434	TGTTGAAT others(23): Show TGTTGAATAACTTTACTTTACTGTTTCCCAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0013 a0001c0001t0026g0013	1	62	0.0161	-30	c.11 others(43): Show c.11387_*11416delTTGGGAAACAGTAAAGTAAAGTTATTCAAC		LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding					182		chr9	TogoVar
LINGO2_chr9_27932617_29218601	28506407	TATATATA others(23): Show TATATATATATATATACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0051 a0001c0001t0021g0051	1	62	0.0161	-30	c.-31 others(51): Show c.-313-30412_-313-30383delGTGTGTGTGTGTGTGTATATATAT ATATAT		LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	3/6						chr9	TogoVar
LINGO2_chr9_27932617_29218601	28848210	TACTATAT others(23): Show TACTATATATACGCATAGTGTATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01071.hp1 HG01261.hp2 others(5): Show HG00639.hp2 HG01071.hp1 HG01261.hp2 HG02630.hp1 HG03209.hp1 HG03486.hp1 HG06807.hp1 NA19074.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0001c0001t0004 a0001c0001t0014 others(4): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0014 a0001c0001t0025 a0001c0001t0032 a0001c0001t0034 a0002c0002t0001	a0001c0001t0003g0034 a0001c0001t0004g0022 a0001c0001t0004g0039 others(5): Show a0001c0001t0003g0034 a0001c0001t0004g0022 a0001c0001t0004g0039 a0001c0001t0014g0008 a0001c0001t0025g0055 a0001c0001t0032g0023 a0001c0001t0034g0061 a0002c0002t0001g0050	8	62	0.1290	-30	c.-39 others(51): Show c.-395+99578_-395+99607delGTGTATATATACACTATGCGTATA TATAGT		LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6						chr9	TogoVar
LIPC_chr15_58426991_58574844	58567281	GTATATAT others(23): Show GTATATATATATACATATATATATACATATA	G G	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02056.hp2 HG00423.hp2 HG02056.hp2	a0001 a0003 a0001 a0003	a0001c0009 a0003c0010 a0001c0009 a0003c0010	a0001c0009t0001 a0003c0010t0001 a0001c0009t0001 a0003c0010t0001	a0001c0009t0001g0034 a0003c0010t0001g0280 a0001c0009t0001g0034 a0003c0010t0001g0280	2	358	0.0056	-30	c.138 others(49): Show c.1389-1431_1389-1402delATATATATACATATATATATACATAT ATAT		LIPC	ENSG00000166035.11	transcript	ENST00000299022.10	protein_coding	8/8					INFO_REALIGN_3_PRIME	chr15	TogoVar
LIPG_chr18_49557057_49604185	49579001	GGGGAGAG others(23): Show GGGGAGAGGGAGAGGGAGAGGGAGAGGGAGA	G G	intron_variant intron_variant	MODIFIER	HG03453.hp1 NA19240.hp2 HG03453.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0055 a0001c0003t0007 a0001c0001t0055 a0001c0003t0007	a0001c0001t0055g0326 a0001c0003t0007g0199 a0001c0001t0055g0326 a0001c0003t0007g0199	2	384	0.0052	-30	c.794 others(47): Show c.794-2206_794-2177delAGAGGGAGAGGGAGAGGGAGAGGGAGAG GG		LIPG	ENSG00000101670.12	transcript	ENST00000261292.9	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr18	TogoVar
LIPG_chr18_49557057_49604185	49579759	CTTTCCTT others(23): Show CTTTCCTTTCTTTTCTTTTCTTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02055.hp1 NA18944.hp2 others(1): Show HG01891.hp2 HG02055.hp1 NA18944.hp2 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0097 a0001c0001t0098 a0001c0001t0032 a0001c0001t0097 a0001c0001t0098	a0001c0001t0032g0021 a0001c0001t0032g0022 a0001c0001t0097g0267 others(1): Show a0001c0001t0032g0021 a0001c0001t0032g0022 a0001c0001t0097g0267 a0001c0001t0098g0268	4	384	0.0104	-30	c.794 others(47): Show c.794-1651_794-1622delCTTTCTTTTCTTTTCTTTTCTTTTCTTT TC		LIPG	ENSG00000101670.12	transcript	ENST00000261292.9	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr18	TogoVar
LIPG_chr18_49557057_49604185	49579764	CTTTCTTT others(23): Show CTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0141 a0001c0001t0141	a0001c0001t0141g0250 a0001c0001t0141g0250	1	384	0.0026	-30	c.794 others(47): Show c.794-1623_794-1594delTCTTTTCTTTTCTTTTCTTTTCTTTTCT TT		LIPG	ENSG00000101670.12	transcript	ENST00000261292.9	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr18	TogoVar
LIPI_chr21_14103813_14215955	14106194	AAAAAAAA others(23): Show AAAAAAAAAAAATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0002 a0005c0004t0002	a0005c0004t0002g0061 a0005c0004t0002g0061	1	362	0.0028	-30	c.27 others(41): Show c.2769_*2798delATATATATATATATATATATTTTTTTTTTT		LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding					2618		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106196	AAAAAAAA others(23): Show AAAAAAAAAATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp2 NA18949.hp2 HG02055.hp2 NA18949.hp2	a0002 a0004 a0002 a0004	a0002c0002 a0004c0003 a0002c0002 a0004c0003	a0002c0002t0006 a0004c0003t0001 a0002c0002t0006 a0004c0003t0001	a0002c0002t0006g0255 a0004c0003t0001g0047 a0002c0002t0006g0255 a0004c0003t0001g0047	2	362	0.0055	-30	c.27 others(41): Show c.2767_*2796delATATATATATATATATATATATTTTTTTTT		LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding					2616		chr21	TogoVar
LIPN_chr10_88755020_88784626	88767644	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02559.hp1 HG02970.hp2 HG01884.hp2 HG02559.hp1 HG02970.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0011 a0001c0004t0011	a0001c0004t0011g0205 a0001c0004t0011g0206 a0001c0004t0011g0207 a0001c0004t0011g0205 a0001c0004t0011g0206 a0001c0004t0011g0207	3	394	0.0076	-30	c.536 others(47): Show c.536-1129_536-1100delAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA		LIPN	ENSG00000204020.6	transcript	ENST00000404459.2	protein_coding	5/9					INFO_REALIGN_3_PRIME	chr10	TogoVar
LIPT1_chr2_99149967_99168137	99161277	AAAAAAAA others(23): Show AAAAAAAAAAAAAAAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01943.hp1 NA19006.hp2 NA19081.hp1 HG01943.hp1 NA19006.hp2 NA19081.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0027 a0001c0003t0001g0027	3	406	0.0074	-30	c.-1- others(43): Show c.-1-678_-1-649delAAAAAAAAAAAAAATATATATATATATATA		LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161279	AAAAAAAA others(23): Show AAAAAAAAAAAAAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01433.hp1 NA18947.hp1 others(2): Show HG01070.hp1 HG01433.hp1 NA18947.hp1 NA18949.hp1 NA19090.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0009 a0001c0002 a0001c0003 a0001c0009	a0001c0002t0001 a0001c0003t0001 a0001c0009t0001 a0001c0002t0001 a0001c0003t0001 a0001c0009t0001	a0001c0002t0001g0074 a0001c0003t0001g0060 a0001c0003t0001g0061 others(1): Show a0001c0002t0001g0074 a0001c0003t0001g0060 a0001c0003t0001g0061 a0001c0009t0001g0060	5	406	0.0123	-30	c.-1- others(43): Show c.-1-676_-1-647delAAAAAAAAAAAATATATATATATATATATA		LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161281	AAAAAAAA others(23): Show AAAAAAAAAAAATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0233 a0001c0003t0001g0233	1	406	0.0025	-30	c.-1- others(43): Show c.-1-674_-1-645delAAAAAAAAAATATATATATATATATATATA		LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr2	TogoVar
LITAF_chr16_11542722_11591919	11579459	AAAAATAA others(23): Show AAAAATAAAATAAAATAAAATAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp1 HG00323.hp2 others(54): Show HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00423.hp1 HG00639.hp1 HG00733.hp2 HG00735.hp2 HG01070.hp2 HG01071.hp1 HG01123.hp1 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01255.hp1 HG01255.hp2 HG01257.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01884.hp2 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp1 HG02451.hp2 HG02486.hp1 HG02698.hp1 HG02735.hp1 HG03239.hp2 HG03471.hp2 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG04115.hp1 NA18940.hp2 NA18945.hp2 NA18946.hp2 NA18951.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18974.hp2 NA18989.hp2 NA19000.hp2 NA19003.hp1 NA19043.hp2 NA19060.hp1 NA19066.hp2 NA19070.hp2 NA19084.hp2 NA20129.hp2 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0036 a0002c0002t0001 a0002c0002t0002 a0002c0002t0015	a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0291 others(53): Show a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0001g0303 a0001c0001t0001g0306 a0001c0001t0001g0308 a0001c0001t0001g0313 a0001c0001t0001g0315 a0001c0001t0001g0317 a0001c0001t0001g0341 a0001c0001t0001g0342 a0001c0001t0001g0369 a0001c0001t0001g0380 a0001c0001t0001g0388 a0001c0001t0001g0389 a0001c0001t0002g0304 a0001c0001t0002g0310 a0001c0001t0002g0316 a0001c0001t0002g0319 a0001c0001t0002g0339 a0001c0001t0002g0370 a0001c0001t0002g0371 a0001c0001t0002g0372 a0001c0001t0002g0373 a0001c0001t0002g0376 a0001c0001t0002g0377 a0001c0001t0002g0378 a0001c0001t0002g0379 a0001c0001t0002g0381 a0001c0001t0002g0390 a0001c0001t0002g0391 a0001c0001t0002g0398 a0001c0001t0003g0296 a0001c0001t0003g0297 a0001c0001t0003g0301 a0001c0001t0008g0294 a0001c0001t0008g0305 a0001c0001t0008g0393 a0001c0001t0008g0394 a0001c0001t0010g0295 a0001c0001t0011g0302 a0001c0001t0012g0314 a0001c0001t0036g0340 a0002c0002t0001g0012 a0002c0002t0001g0320 a0002c0002t0002g0300 a0002c0002t0002g0307 a0002c0002t0002g0318 a0002c0002t0002g0374 a0002c0002t0002g0375 a0002c0002t0015g0311 a0002c0002t0015g0312	57	412	0.1384	-30	c.-6+ others(45): Show c.-6+7397_-6+7426delATTTTATTTTATTTTATTTTATTTTATTTT		LITAF	ENSG00000189067.14	transcript	ENST00000622633.5	protein_coding	1/3						chr16	TogoVar
LMAN2_chr5_177326567_177356668	177326839	AAGAAAGA others(23): Show AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19074.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	376	0.0027	-30	c.52 others(41): Show c.5217_*5246delCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT		LMAN2	ENSG00000169223.16	transcript	ENST00000303127.12	protein_coding					4727		chr5	TogoVar
LMF1_chr16_848634_975984	953003	CCCAAACC others(23): Show CCCAAACCAGCCTCCTACATATCCACACAGA	C C	intron_variant intron_variant	MODIFIER	NA19004.hp2 NA19064.hp1 NA20129.hp1 NA19004.hp2 NA19064.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0003 a0005c0027 a0001c0001 a0001c0003 a0005c0027	a0001c0001t0001 a0001c0003t0001 a0005c0027t0001 a0001c0001t0001 a0001c0003t0001 a0005c0027t0001	a0001c0001t0001g0188 a0001c0003t0001g0186 a0005c0027t0001g0032 a0001c0001t0001g0188 a0001c0003t0001g0186 a0005c0027t0001g0032	3	294	0.0102	-30	c.503 others(47): Show c.503+1324_503+1353delTCTGTGTGGATATGTAGGAGGCTGGTTT GG		LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	2/10						chr16	TogoVar
LMF1_chr16_848634_975984	953515	CCCAAACC others(23): Show CCCAAACCAGCCTCCTACATATCCACACAGA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG03139.hp1 HG03704.hp1 others(1): Show HG00741.hp1 HG03139.hp1 HG03704.hp1 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0018 a0001c0001 a0001c0018	a0001c0001t0001 a0001c0018t0001 a0001c0001t0001 a0001c0018t0001	a0001c0001t0001g0126 a0001c0001t0001g0151 a0001c0001t0001g0228 others(1): Show a0001c0001t0001g0126 a0001c0001t0001g0151 a0001c0001t0001g0228 a0001c0018t0001g0242	4	294	0.0136	-30	c.503 others(45): Show c.503+812_503+841delTCTGTGTGGATATGTAGGAGGCTGGTTTGG		LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	2/10						chr16	TogoVar
LMF1_chr16_848634_975984	953549	CCCAAACC others(23): Show CCCAAACCAGCCTCCTACATATCCACACAGA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01934.hp1 NA19064.hp1 HG00642.hp1 HG01934.hp1 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0003t0001g0186 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0003t0001g0186	3	294	0.0102	-30	c.503 others(45): Show c.503+778_503+807delTCTGTGTGGATATGTAGGAGGCTGGTTTGG		LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	2/10						chr16	TogoVar
LMF1_chr16_848634_975984	959834	CTGGAATA others(23): Show CTGGAATACACCGTGTGCCAGGACGGGAGGA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG01069.hp1 others(24): Show HG00140.hp1 HG00323.hp2 HG01069.hp1 HG01071.hp2 HG01081.hp1 HG01243.hp1 HG01361.hp2 HG01884.hp1 HG01928.hp1 HG01934.hp2 HG01952.hp2 HG02109.hp2 HG02486.hp1 HG02559.hp2 HG02622.hp1 HG02723.hp1 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03130.hp2 HG03453.hp2 HG03516.hp1 HG03579.hp2 HG06807.hp2 NA19043.hp1 NA20129.hp2	a0001 a0002 a0007 others(3): Show a0001 a0002 a0007 a0009 a0010 a0011	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0002c0007 a0002c0054 a0007c0028 a0009c0024 a0010c0047 a0011c0038 a0011c0039	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(13): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0011 a0001c0003t0001 a0001c0005t0001 a0001c0005t0012 a0001c0006t0001 a0001c0006t0002 a0002c0007t0001 a0002c0054t0001 a0007c0028t0004 a0009c0024t0001 a0010c0047t0010 a0011c0038t0001 a0011c0039t0002	a0001c0001t0001g0024 a0001c0002t0001g0288 a0001c0002t0002g0289 others(24): Show a0001c0001t0001g0024 a0001c0002t0001g0288 a0001c0002t0002g0289 a0001c0002t0002g0291 a0001c0002t0011g0292 a0001c0003t0001g0102 a0001c0005t0001g0109 a0001c0005t0001g0111 a0001c0005t0001g0112 a0001c0005t0001g0113 a0001c0005t0001g0116 a0001c0005t0012g0110 a0001c0006t0001g0284 a0001c0006t0001g0285 a0001c0006t0001g0286 a0001c0006t0001g0287 a0001c0006t0001g0290 a0001c0006t0002g0282 a0001c0006t0002g0283 a0002c0007t0001g0120 a0002c0054t0001g0114 a0007c0028t0004g0017 a0009c0024t0001g0117 a0009c0024t0001g0118 a0010c0047t0010g0281 a0011c0038t0001g0245 a0011c0039t0002g0264	27	294	0.0918	-30	c.194 others(47): Show c.194-5198_194-5169delTCCTCCCGTCCTGGCACACGGTGTATTC CA		LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	1/10						chr16	TogoVar
LMNB1_chr5_126772136_126842020	126785709	CCTTAGGT others(23): Show CCTTAGGTTGGGCCCAACCCTTAGGTTGGGA	C C	intron_variant intron_variant	MODIFIER	HG01928.hp2 HG01928.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0249 a0001c0001t0001g0249	1	374	0.0027	-30	c.359 others(47): Show c.359+7844_359+7873delTTAGGTTGGGCCCAACCCTTAGGTTGGG AC		LMNB1	ENSG00000113368.12	transcript	ENST00000261366.10	protein_coding	1/10					INFO_REALIGN_3_PRIME	chr5	TogoVar
LMNTD1_chr12_25471082_25558283	25527659	TATATATA others(23): Show TATATATATATATATATATATATACACACAC	T T	intron_variant intron_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0005 a0005	a0005c0009 a0005c0009	a0005c0009t0001 a0005c0009t0001	a0005c0009t0001g0375 a0005c0009t0001g0375	1	388	0.0026	-30	c.492 others(45): Show c.492-734_492-705delGTGTGTGTATATATATATATATATATATAT		LMNTD1	ENSG00000152936.11	transcript	ENST00000458174.7	protein_coding	4/9						chr12	TogoVar
LMO2_chr11_33853576_33897076	33871201	CTGTGTGT others(23): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0022 a0001c0002t0022	a0001c0002t0022g0185 a0001c0002t0022g0185	1	442	0.0023	-30	c.-27 others(49): Show c.-271-1244_-271-1215delCACACACACACACACACACACACACA CACA		LMO2	ENSG00000135363.12	transcript	ENST00000257818.3	protein_coding	2/5						chr11	TogoVar

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