Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TBPL2_chr14_55409210_55445616	55439930	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00609.hp2 NA18954.hp2 others(2): Show HG00544.hp1 HG00609.hp2 NA18954.hp2 NA18956.hp2 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 others(2): Show a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243	5	87	0.0575	17	c.54+ others(30): Show c.54+449_54+465dupTTTTTTTTTTTTTTTTT	TBPL2	ENSG00000182521.6	transcript	ENST00000247219.6	protein_coding	1/6			chr14	TogoVar
TBPL2_chr14_55409210_55445616	55445604	A A	ATATATAT others(10): Show ATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19083.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0353 a0001c0001t0002g0353	1	375	0.0027	17	c.-51 others(28): Show c.-5156_-5155insATATATATATATATATA	TBPL2	ENSG00000182521.6	transcript	ENST00000247219.6	protein_coding		4989		chr14	TogoVar
TBX1_chr22_19755778_19772334	19768953	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 HG00609.hp1 HG00673.hp2 others(16): Show HG00597.hp2 HG00609.hp1 HG00673.hp2 HG00733.hp1 HG00738.hp2 HG00741.hp1 HG01169.hp2 HG01255.hp1 HG01433.hp1 HG02148.hp1 HG03225.hp1 HG03831.hp2 HG03834.hp1 NA18943.hp2 NA18982.hp1 NA18989.hp1 NA19060.hp2 NA19067.hp2 NA19087.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0004 a0002c0003 a0001c0002 a0001c0004 a0002c0003	a0001c0002t0001 a0001c0004t0002 a0002c0003t0001 a0001c0002t0001 a0001c0004t0002 a0002c0003t0001	a0001c0002t0001g0003 a0001c0004t0002g0017 a0002c0003t0001g0002 a0001c0002t0001g0003 a0001c0004t0002g0017 a0002c0003t0001g0002	19	165	0.1152	17	c.20 others(28): Show c.2086_*2087insTTTTTTTTTTTTTTTTT	TBX1	ENSG00000184058.16	transcript	ENST00000649276.2	protein_coding		1620		chr22	TogoVar
TBX21_chr17_47728236_47751122	47747834	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02040.hp2 NA18954.hp1 NA18975.hp2 others(2): Show HG02040.hp2 NA18954.hp1 NA18975.hp2 NA19009.hp1 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0017 others(2): Show a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0017 a0001c0001t0001g0023 a0001c0001t0001g0045	5	238	0.0210	17	c.24 others(28): Show c.2468_*2469insTTTTTTTTTTTTTTTTT	TBX21	ENSG00000073861.3	transcript	ENST00000177694.2	protein_coding		1713		chr17	TogoVar
TBX22_chrX_80009753_80036774	80012155	A A	AAGAGAAA others(10): Show AAGAGAAAGAAGAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp2 HG00735.hp2 HG00741.hp2 others(14): Show HG00597.hp2 HG00735.hp2 HG00741.hp2 HG01074.hp1 HG01169.hp2 HG01175.hp2 HG02083.hp1 HG02922.hp1 HG03195.hp2 HG03491.hp1 NA18942.hp1 NA18952.hp1 NA18991.hp1 NA18992.hp2 NA19065.hp2 NA19066.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0016 a0001c0001t0001g0022 a0001c0001t0001g0042 others(14): Show a0001c0001t0001g0016 a0001c0001t0001g0022 a0001c0001t0001g0042 a0001c0001t0001g0049 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0166 a0001c0001t0001g0182 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0205 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0004g0016	17	322	0.0528	17	c.-27 others(28): Show c.-2735_-2734insAGAGAAAGAAGAGAAAG	TBX22	ENSG00000122145.15	transcript	ENST00000373296.8	protein_coding		2597		chrX	TogoVar
TBX22_chrX_80009753_80036774	80012157	G G	GAGAAAGA others(10): Show GAGAAAGAAGAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01515.hp1 HG01517.hp1 HG01515.hp1 HG01517.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0047 a0003c0004t0001g0047	2	115	0.0174	17	c.-27 others(28): Show c.-2733_-2732insAGAAAGAAGAGAAAGAA	TBX22	ENSG00000122145.15	transcript	ENST00000373296.8	protein_coding		2595		chrX	TogoVar
TBX2_chr17_61394843_61414466	61402971	A A	AGAGAGAG others(10): Show AGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02083.hp2 HG02155.hp2 others(11): Show HG02004.hp1 HG02083.hp2 HG02155.hp2 HG02257.hp2 HG02602.hp2 HG02976.hp2 NA18612.hp2 NA18975.hp1 NA19043.hp1 NA19054.hp1 NA19063.hp1 NA19066.hp2 NA19079.hp2 NA19091.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0002t0004 a0001c0002t0021 others(1): Show a0001c0002t0001 a0001c0002t0004 a0001c0002t0021 a0001c0003t0006	a0001c0002t0001g0002 a0001c0002t0001g0053 a0001c0002t0004g0007 others(3): Show a0001c0002t0001g0002 a0001c0002t0001g0053 a0001c0002t0004g0007 a0001c0002t0004g0014 a0001c0002t0021g0064 a0001c0003t0006g0005	14	230	0.0609	17	c.664 others(30): Show c.664-90_664-89insGAGAGAGAGAGAGAGAG	TBX2	ENSG00000121068.14	transcript	ENST00000240328.4	protein_coding	2/6			chr17	TogoVar
TBX2_chr17_61394843_61414466	61402971	A A	AGAGAGAG others(10): Show AGAGAGAGGGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA18985.hp1 HG03579.hp2 NA18985.hp1	a0001 a0007 a0001 a0007	a0001c0003 a0007c0012 a0001c0003 a0007c0012	a0001c0003t0006 a0007c0012t0005 a0001c0003t0006 a0007c0012t0005	a0001c0003t0006g0005 a0007c0012t0005g0005 a0001c0003t0006g0005 a0007c0012t0005g0005	2	218	0.0092	17	c.664 others(30): Show c.664-90_664-89insGAGAGAGGGAGAGAGAG	TBX2	ENSG00000121068.14	transcript	ENST00000240328.4	protein_coding	2/6			chr17	TogoVar
TBXA2R_chr19_3589507_3611875	3598345	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02965.hp1 HG02723.hp1 HG02965.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0017 a0001c0002t0017	a0001c0002t0017g0209 a0001c0002t0017g0248 a0001c0002t0017g0209 a0001c0002t0017g0248	2	404	0.0050	17	c.786 others(34): Show c.786+1503_786+1504insAAAAAAAAAAAAAAAAA	TBXA2R	ENSG00000006638.13	transcript	ENST00000375190.10	protein_coding	2/2			chr19	TogoVar
TBXAS1_chr7_139824264_140025293	139951593	T T	TAAAAAAA others(10): Show TAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02258.hp2 NA18906.hp2 HG02258.hp2 NA18906.hp2	a0002 a0011 a0002 a0011	a0002c0002 a0011c0011 a0002c0002 a0011c0011	a0002c0002t0001 a0011c0011t0001 a0002c0002t0001 a0011c0011t0001	a0002c0002t0001g0188 a0011c0011t0001g0138 a0002c0002t0001g0188 a0011c0011t0001g0138	2	32	0.0625	17	c.451 others(34): Show c.451-1761_451-1745dupAAAAAAAAAAAAAAAAA	TBXAS1	ENSG00000059377.19	transcript	ENST00000448866.7	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
TBXAS1_chr7_139824264_140025293	139951950	A A	AAAAAGAA others(10): Show AAAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03486.hp1 HG02280.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0270 a0001c0001t0001g0166 a0001c0001t0001g0270	2	168	0.0119	17	c.451 others(34): Show c.451-1415_451-1414insAGAAAGAAAGAAAGAAA	TBXAS1	ENSG00000059377.19	transcript	ENST00000448866.7	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
TBXT_chr6_166152656_166172851	166153551	C C	CCTCGGCT others(10): Show CCTCGGCTTCCCAAAGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0026 a0001c0002t0002g0026	1	458	0.0022	17	c.47 others(28): Show c.4763_*4764insCACTTTGGGAAGCCGAG	TBXT	ENSG00000164458.10	transcript	ENST00000366876.7	protein_coding		4104		chr6	TogoVar
TCAIM_chr3_44333766_44414448	44405109	C C	CCAGCCTG others(10): Show CCAGCCTGTGGCTGGGAA	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0087 a0001c0001t0004g0087	1	246	0.0041	17	c.125 others(36): Show c.1251-2332_1251-2331insAGCCTGTGGCTGGGAAC	TCAIM	ENSG00000179152.20	transcript	ENST00000342649.9	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr3	TogoVar
TCEA1_chr8_53961556_54027448	53996903	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG02698.hp1 HG02896.hp1 others(2): Show HG01934.hp2 HG02698.hp1 HG02896.hp1 HG04184.hp2 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0053 a0001c0001t0001g0062 others(2): Show a0001c0001t0001g0041 a0001c0001t0001g0053 a0001c0001t0001g0062 a0001c0001t0001g0078 a0001c0001t0001g0126	5	103	0.0485	17	c.232 others(34): Show c.232+3041_232+3042insAAAAAAAAAAAAAAAAA	TCEA1	ENSG00000187735.16	transcript	ENST00000521604.7	protein_coding	3/9			chr8	TogoVar
TCERG1L_chr10_131087391_131316721	131256992	G G	GGAAGGAA others(10): Show GGAAGGAAAGAAAAGAAA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03195.hp1 HG02258.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0091 a0001c0001t0001g0093	2	193	0.0104	17	c.856 others(34): Show c.856+3266_856+3267insTTTCTTTTCTTTCCTTC	TCERG1L	ENSG00000176769.9	transcript	ENST00000368642.4	protein_coding	4/11			chr10	TogoVar
TCERG1L_chr10_131087391_131316721	131257049	G G	GAAAGAAA others(10): Show GAAAGAAAGAAAGAAAGA	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0291 a0001c0001t0009g0291	1	312	0.0032	17	c.856 others(34): Show c.856+3209_856+3210insTCTTTCTTTCTTTCTTT	TCERG1L	ENSG00000176769.9	transcript	ENST00000368642.4	protein_coding	4/11			chr10	TogoVar
TCF12_chr15_56913644_57294853	56984001	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02523.hp2 HG02559.hp1 others(1): Show HG01243.hp2 HG02523.hp2 HG02559.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0011 a0001c0001t0003 a0001c0001t0011	a0001c0001t0003g0209 a0001c0001t0011g0325 a0001c0001t0011g0327 others(1): Show a0001c0001t0003g0209 a0001c0001t0011g0325 a0001c0001t0011g0327 a0001c0001t0011g0328	4	164	0.0244	17	c.148 others(36): Show c.148+62918_148+62919insAAAAAAAAAAAAAAAAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57024216	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02559.hp1 HG01243.hp2 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0327 a0001c0001t0011g0328 a0001c0001t0011g0327 a0001c0001t0011g0328	2	109	0.0183	17	c.149 others(36): Show c.149-39526_149-39510dupTTTTTTTTTTTTTTTTT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57064795	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0267 a0001c0001t0009g0267	1	152	0.0066	17	c.222 others(32): Show c.222+974_222+990dupAAAAAAAAAAAAAAAAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57075804	T T	TTCTTTCT others(10): Show TTCTTTCTTTCTTCTCTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0312 a0001c0001t0008g0312	1	117	0.0085	17	c.222 others(36): Show c.222+11984_222+11985insTTCTTTCTTCTCTCTCT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57123968	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02074.hp1 NA19070.hp2 NA19083.hp2 HG02074.hp1 NA19070.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0181 a0001c0001t0003g0190 a0001c0001t0003g0212 a0001c0001t0003g0181 a0001c0001t0003g0190 a0001c0001t0003g0212	3	183	0.0164	17	c.325 others(36): Show c.325+32091_325+32092insAAAAAAAAAAAAAAAAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57170664	T T	TTATATAT others(10): Show TTATATATATTATATATA	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02083.hp2 NA19000.hp2 others(2): Show HG02071.hp2 HG02083.hp2 NA19000.hp2 NA19007.hp1 NA19068.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0017 a0001c0002t0001g0025 a0001c0002t0001g0026 others(2): Show a0001c0002t0001g0017 a0001c0002t0001g0025 a0001c0002t0001g0026 a0001c0002t0001g0035 a0001c0002t0001g0036	5	322	0.0155	17	c.390 others(34): Show c.390+4198_390+4199insTATATATATTATATATA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	6/20			chr15	TogoVar
TCF12_chr15_56913644_57294853	57208380	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0006 a0001c0001t0020g0006	1	94	0.0106	17	c.579 others(36): Show c.579+10558_579+10574dupTTTTTTTTTTTTTTTTT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	8/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57223643	G G	GTTTTTTT others(10): Show GTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG03688.hp2 NA20752.hp2 HG01361.hp1 HG03688.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0172 a0001c0001t0003g0186 a0001c0001t0003g0232 a0001c0001t0003g0172 a0001c0001t0003g0186 a0001c0001t0003g0232	3	98	0.0306	17	c.580 others(34): Show c.580-7497_580-7481dupTTTTTTTTTTTTTTTTT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	8/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57264195	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG02451.hp2 HG02896.hp1 others(7): Show HG01169.hp1 HG02451.hp2 HG02896.hp1 HG02922.hp2 HG03139.hp1 HG03654.hp2 NA18950.hp2 NA18960.hp2 NA19054.hp1 NA20300.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0007 a0001c0002 a0001c0005 a0001c0007	a0001c0002t0001 a0001c0002t0028 a0001c0005t0001 others(1): Show a0001c0002t0001 a0001c0002t0028 a0001c0005t0001 a0001c0007t0001	a0001c0002t0001g0023 a0001c0002t0001g0028 a0001c0002t0001g0037 others(7): Show a0001c0002t0001g0023 a0001c0002t0001g0028 a0001c0002t0001g0037 a0001c0002t0028g0014 a0001c0005t0001g0069 a0001c0005t0001g0080 a0001c0005t0001g0086 a0001c0005t0001g0088 a0001c0005t0001g0117 a0001c0007t0001g0116	10	20	0.5000	17	c.174 others(34): Show c.1745+928_1745+944dupTTTTTTTTTTTTTTTTT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF15_chr20_599257_615309	610269	T T	TCCCAGCG others(10): Show TCCCAGCGTCGGCCGCGC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0094 a0001c0001t0005g0094	1	428	0.0023	17	c.-49 others(24): Show c.-49_-33dupGCGCGGCCGACGCTGGG	TCF15	ENSG00000125878.7	transcript	ENST00000246080.4	protein_coding	1/2	33		chr20	TogoVar
TCF15_chr20_599257_615309	612508	G G	GGGAAAGG others(10): Show GGGAAAGGGCAACTGCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	428	0.0023	17	c.-22 others(28): Show c.-2272_-2271insAGGCAGTTGCCCTTTCC	TCF15	ENSG00000125878.7	transcript	ENST00000246080.4	protein_coding		2200		chr20	TogoVar
TCF20_chr22_42155013_42275653	42216079	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 NA19011.hp2 HG01243.hp1 NA19011.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0001 a0001c0001t0001 a0003c0004t0001	a0001c0001t0001g0173 a0003c0004t0001g0110 a0001c0001t0001g0173 a0003c0004t0001g0110	2	83	0.0241	17	c.-36 others(32): Show c.-36-755_-36-739dupAAAAAAAAAAAAAAAAA	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF20_chr22_42155013_42275653	42219355	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02717.hp1 HG02717.hp2 HG02615.hp1 HG02717.hp1 HG02717.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0001 a0001c0001t0001 a0003c0004t0001	a0001c0001t0001g0202 a0001c0001t0001g0203 a0003c0004t0001g0112 a0001c0001t0001g0202 a0001c0001t0001g0203 a0003c0004t0001g0112	3	76	0.0395	17	c.-36 others(34): Show c.-36-4031_-36-4015dupTTTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF20_chr22_42155013_42275653	42242202	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0012 a0012	a0012c0029 a0012c0029	a0012c0029t0022 a0012c0029t0022	a0012c0029t0022g0354 a0012c0029t0022g0354	1	159	0.0063	17	c.-36 others(36): Show c.-36-26878_-36-26862dupTTTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF20_chr22_42155013_42275653	42242227	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0267 a0001c0001t0001g0267	1	260	0.0038	17	c.-36 others(36): Show c.-36-26887_-36-26886insATTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF20_chr22_42155013_42275653	42254959	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG03471.hp1 NA19043.hp1 HG02895.hp2 HG03471.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0245 a0001c0001t0002g0014 a0001c0001t0003g0013 a0001c0001t0001g0245 a0001c0001t0002g0014 a0001c0001t0003g0013	3	100	0.0300	17	c.-37 others(36): Show c.-37+15363_-37+15379dupTTTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF25_chr16_89868592_89916379	89869045	A A	ACATATAT others(10): Show ACATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0040 a0001c0002t0001g0040	1	269	0.0037	17	c.-46 others(28): Show c.-4623_-4622insCATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4546		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAA others(10): Show AAAAAAAAAAATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0053 a0002c0003t0001g0053	1	26	0.0385	17	c.-46 others(28): Show c.-4615_-4614insAAAAAAAAAATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAA others(10): Show AAAAAAAAATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG01106.hp2 HG01167.hp2 others(8): Show HG00741.hp1 HG01106.hp2 HG01167.hp2 HG01169.hp1 HG01993.hp2 HG02257.hp2 HG02273.hp2 HG02698.hp2 HG02809.hp2 NA18971.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0002c0006 a0001c0001 a0002c0003 a0002c0006	a0001c0001t0001 a0002c0003t0001 a0002c0006t0002 a0001c0001t0001 a0002c0003t0001 a0002c0006t0002	a0001c0001t0001g0003 a0001c0001t0001g0058 a0001c0001t0001g0078 others(8): Show a0001c0001t0001g0003 a0001c0001t0001g0058 a0001c0001t0001g0078 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0107 a0001c0001t0001g0119 a0001c0001t0001g0135 a0001c0001t0001g0159 a0002c0003t0001g0054 a0002c0006t0002g0181	11	36	0.3056	17	c.-46 others(28): Show c.-4615_-4614insAAAAAAAATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAT others(10): Show AAAAAAATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0188 a0001c0001t0001g0188	1	26	0.0385	17	c.-46 others(28): Show c.-4615_-4614insAAAAAATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAATAT others(10): Show AAAAATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG04204.hp1 HG03688.hp2 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0090 a0001c0001t0001g0003 a0001c0001t0001g0090	2	27	0.0741	17	c.-46 others(28): Show c.-4615_-4614insAAAATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF4_chr18_55217185_55593192	55362434	G G	GAAGGAAG others(10): Show GAAGGAAGGAAGGAAGGA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0044 a0001c0001t0022g0044	1	115	0.0087	17	c.370 others(36): Show c.370-11432_370-11431insTCCTTCCTTCCTTCCTT	TCF4	ENSG00000196628.20	transcript	ENST00000354452.8	protein_coding	6/19			chr18	TogoVar
TCF7L1_chr2_85128392_85315387	85153340	A A	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0069 a0002c0002t0001g0069	1	53	0.0189	17	c.441 others(36): Show c.441+18893_441+18909dupTTTTTTTTTTTTTTTTT	TCF7L1	ENSG00000152284.5	transcript	ENST00000282111.4	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr2	TogoVar
TCF7L1_chr2_85128392_85315387	85299860	A A	ACACACAC others(10): Show ACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	17	0.0588	17	c.526 others(34): Show c.526-2624_526-2623insCACACACACACACACAC	TCF7L1	ENSG00000152284.5	transcript	ENST00000282111.4	protein_coding	4/11			chr2	TogoVar
TCFL5_chr20_62836005_62866822	62859666	A A	AATATTCG others(10): Show AATATTCGCATACCACAT	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0069 a0001c0001t0003g0069	1	388	0.0026	17	c.832 others(32): Show c.832-157_832-141dupATGTGGTATGCGAATAT	TCFL5	ENSG00000101190.13	transcript	ENST00000335351.8	protein_coding	2/5			chr20	TogoVar
TCHP_chr12_109895274_109923069	109904338	C C	CCCCTTCA others(10): Show CCCCTTCAATCATTACAT	intron_variant intron_variant	MODIFIER	NA19083.hp2 NA19083.hp2	a0012 a0012	a0012c0015 a0012c0015	a0012c0015t0001 a0012c0015t0001	a0012c0015t0001g0048 a0012c0015t0001g0048	1	330	0.0030	17	c.399 others(32): Show c.399+193_399+209dupCCTTCAATCATTACATC	TCHP	ENSG00000139437.18	transcript	ENST00000405876.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
TCL1A_chr14_95704947_95719125	95708500	A A	ATATATAT others(10): Show ATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02083.hp2 HG03017.hp2 HG02083.hp2 HG03017.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0068 a0001c0001t0001g0002 a0001c0001t0001g0068	2	354	0.0056	17	c.23 others(28): Show c.2387_*2388insATATATATATATATATA	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1446		chr14	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	AAAAAAAA others(10): Show AAAAAAAAAAAAAAAAAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0035 a0001c0001t0016g0035	1	250	0.0040	17	c.23 others(28): Show c.2385_*2386insATTTTTTTTTTTTTTTT	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1444		chr14	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	AAATATAT others(10): Show AAATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp1 HG02273.hp2 NA18990.hp1 others(1): Show HG01943.hp1 HG02273.hp2 NA18990.hp1 NA18998.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0002 a0001c0001t0001g0048 a0002c0002t0001g0008 a0001c0001t0001g0002 a0001c0001t0001g0048 a0002c0002t0001g0008	4	253	0.0158	17	c.23 others(28): Show c.2385_*2386insATATATATATATATATT	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1444		chr14	TogoVar
TCP11L1_chr11_33034572_33078550	33038139	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp2 HG00741.hp2 HG01069.hp1 others(20): Show HG00438.hp2 HG00741.hp2 HG01069.hp1 HG01109.hp1 HG01261.hp2 HG01981.hp2 HG02145.hp1 HG02155.hp2 HG02559.hp2 HG02717.hp1 HG03579.hp2 HG03654.hp1 HG03688.hp2 HG04204.hp2 NA18952.hp1 NA18957.hp1 NA18970.hp1 NA18977.hp2 NA18995.hp2 NA19011.hp2 NA19078.hp2 NA19079.hp1 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 others(2): Show a0001c0001 a0001c0003 a0001c0006 a0001c0008 a0001c0011	a0001c0001t0001 a0001c0003t0001 a0001c0006t0004 others(2): Show a0001c0001t0001 a0001c0003t0001 a0001c0006t0004 a0001c0008t0001 a0001c0011t0001	a0001c0001t0001g0044 a0001c0003t0001g0002 a0001c0003t0001g0016 others(15): Show a0001c0001t0001g0044 a0001c0003t0001g0002 a0001c0003t0001g0016 a0001c0003t0001g0022 a0001c0003t0001g0036 a0001c0003t0001g0041 a0001c0003t0001g0151 a0001c0003t0001g0154 a0001c0003t0001g0168 a0001c0003t0001g0170 a0001c0003t0001g0172 a0001c0003t0001g0174 a0001c0003t0001g0181 a0001c0003t0001g0185 a0001c0006t0004g0035 a0001c0006t0004g0145 a0001c0008t0001g0010 a0001c0011t0001g0002	23	179	0.1285	17	c.-16 others(28): Show c.-1678_-1677insTTTTTTTTTTTTTTTTT	TCP11L1	ENSG00000176148.16	transcript	ENST00000334274.9	protein_coding		1432		chr11	TogoVar
TCP11L2_chr12_106297733_106352003	106349049	C C	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0045 a0001c0001t0004g0045	1	21	0.0476	17	c.25 others(28): Show c.2519_*2520insTTTTTTTTTTTTTTTTT	TCP11L2	ENSG00000166046.11	transcript	ENST00000299045.8	protein_coding		2047		chr12	TogoVar
TCP11X1_chrX_102210301_102231795	102220696	T T	TATATATA others(10): Show TATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0020 a0002c0002t0001g0020	1	37	0.0270	17	c.231 others(32): Show c.231-845_231-844insATATATATATATATATA	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9			chrX	TogoVar
TCP11X2_chrX_102455315_102476812	102466408	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0077	1	137	0.0073	17	c.231 others(32): Show c.231-840_231-839insATATATATATATATATA	TCP11X2	ENSG00000215029.12	transcript	ENST00000642911.3	protein_coding	3/9			chrX	TogoVar
TCP11X2_chrX_102455315_102476812	102466412	A A	ATATATAT others(10): Show ATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19001.hp1 NA19001.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	130	0.0077	17	c.231 others(32): Show c.231-844_231-843insATATATATATATATATA	TCP11X2	ENSG00000215029.12	transcript	ENST00000642911.3	protein_coding	3/9			chrX	TogoVar

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