Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	100996631
ensemblid	ENSG00000268235.9
hgncid	48369
symbol	TCP11X1
name	t-complex 11 family, X-linked 1
refseq_nuc	NM_001405026.1
refseq_prot	NP_001391955.1
ensembl_nuc	ENST00000622971.4
ensembl_prot	ENSP00000494553.1
mane_status	MANE Select
chr	chrX
start	102215301
end	102226795
strand	+
ver	v1.2
region	chrX:102215301-102226795
region5000	chrX:102210301-102231795
regionname0	TCP11X1_chrX_102215301_102226795
regionname5000	TCP11X1_chrX_102210301_102231795

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	502	19	5	4	6	3	1	2	TCP11X1_chrX_102210301_102231795	TCP11X1	MPKTE others(497): Show MPKTEETVLQNDPSVAENGAPEPKTPGQSQKSKSFCLDDQSPDLIETVNE VSKLSISHEIVVNQDFYVEETILPPNSVEGRFAEAMYNAFWNHLKEQLLS TPPDFTCALELLKDVKETLLSLLLPWQNRLRNEIEEALDTDLLKQEAEHG ALDVPHLSNYILNLMALLCAPVRDEAIQKLETIRDPVQLLRGILRVLGLM KMDMVNYTIQSFRPYLQEHSIQYEQAKFQELLDKQPSLLDYTTKWLTKAA TDITTLCPSSPDSPSSSCSMVCSLPSGAGNNSEPPSPTMVLYQGYLNLLL WDLENVEFPETLLMDRIRLQELAFQLHQLTVLASVLLVARSFSGEVLFRS PEFVDRLKCTTKALTEEFISRPEETMLSVSEQVSQEVHQGLKDMGLTTLS SENTASLLGQLQNITKKENCIRSIVDQWIRFFLKCCLLHGMQESLLHFPG GLILIEKELAELGWKFLNLMHHNQQVFGPYYAEILKHIIHPAQAQETDVE PN	chrX	102210301	102231795
a0002	0/0	502	18	8	5	3	0	2	3	TCP11X1_chrX_102210301_102231795	TCP11X1	MPKTE others(497): Show MPKTEETVLQNDPSVAENGAPEPKTPGQSQKSKSFCLDDQSPDLIETVNE VSKLSISHEIVVNQDFYVEETILPPNSVEGRFAEAMYNAFWNHLKEQLLS TPPDFTCALELLKDVKETLLSLLLPWQNRLRNEIEEALDTDLLKQEAEHG ALDVPHLSNYILNLMALLCAPVRDEAIQKLETIRDPVQLLRGILRVLGLM KMDMVNYTIQSFRPYLQEHSIQYEQAKFQELLDKQPSLLDYTTKWLTKAA TDITTLCPSSPDSPSSSCSMACSLPSGAGNNSEPPSPTMVLYQGYLNLLL WDLENVEFPETLLMDRIRLQELAFQLHQLTVLASVLLVARSFSGEVLFRS PEFVDRLKCTTKALTEEFISRPEETMLSVSEQVSQEVHQGLKDMGLTTLS SENTASLLGQLQNITKKENCIRSIVDQWIRFFLKCCLLHGMQESLLHFPG GLILIEKELAELGWKFLNLMHHNQQVFGPYYAEILKHIIHPAQAQETDVE PN	chrX	102210301	102231795

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1506	19	5	4	6	3	1	TCP11X1_chrX_102210301_102231795	TCP11X1	ATGCC others(1501): Show ATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAGA GAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAGA GTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGAA GTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCTA TGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCGG AGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAGT ACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGGA GACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAGA TAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGGG GCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTCT GCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATAA GAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAATG AAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGCA GGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGATA AACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGCC ACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCTC CTGCAGCATGGTGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAGC CCCCCAGTCCAACAATGGTGCTATACCAAGGTTACCTGAACCTCCTCCTC TGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAAT CCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCCT CAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATCA CCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGGA ATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTGT CTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAGC AGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGAA AGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTCA AATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGGA GGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTCT CAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAGA TCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGAG CCTAAC	chrX	102210301	102231795
a0002c0002	0/0	1506	12	5	5	0	0	2	TCP11X1_chrX_102210301_102231795	TCP11X1	ATGCC others(1501): Show ATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAGA GAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAGA GTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGAA GTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCTA TGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCGG AGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAGT ACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGGA GACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAGA TAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGGG GCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTCT GCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATAA GAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAATG AAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGCA GGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGATA AACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGCC ACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCTC CTGCAGCATGGCGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAGC CCCCCAGTCCAACAATGGTGCTATACCAAGGCTACCTGAACCTCCTCCTC TGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAAT CCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCCT CAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATCA CCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGGA ATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTGT CTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAGC AGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGAA AGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTCA AATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGGA GGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTCT CAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAGA TCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGAG CCTAAC	chrX	102210301	102231795
a0002c0003	0/0	1506	6	3	0	3	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	ATGCC others(1501): Show ATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAGA GAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAGA GTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGAA GTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCTA TGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCGG AGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAGT ACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGGA GACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAGA TAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGGG GCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTCT GCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATAA GAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAATG AAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGCA GGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGATA AACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGCC ACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCTC CTGCAGCATGGCGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAGC CCCCCAGTCCAACAATGGTGCTATACCAAGGTTACCTGAACCTCCTCCTC TGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAAT CCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCCT CAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATCA CCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGGA ATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTGT CTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAGC AGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGAA AGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTCA AATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGGA GGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTCT CAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAGA TCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGAG CCTAAC	chrX	102210301	102231795

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1758	19	5	4	6	3	1	TCP11X1_chrX_102210301_102231795	TCP11X1	AGACG others(1753): Show AGACGCAGAGGCGAGGCCGCCAGTCGAGGACGAGGAGGAGATAACATCAA GATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAG AGAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAG AGTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGA AGTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCT ATGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCG GAGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAG TACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGG AGACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAG ATAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGG GGCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTC TGCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATA AGAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAAT GAAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGC AGGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGAT AAACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGC CACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCT CCTGCAGCATGGTGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAG CCCCCCAGTCCAACAATGGTGCTATACCAAGGTTACCTGAACCTCCTCCT CTGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAA TCCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCC TCAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATC ACCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGG AATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTG TCTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAG CAGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGA AAGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTC AAATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGG AGGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTC TCAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAG ATCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGA GCCTAACTGATAGTGCTGGACCCCAGCTATGGCAACAGGGACTCAGGAGA GAGAGGTCAGCATGTTTCTGGGAGGACATCACCTGTGGTTAGTCGAACAG TCAGCCCTCTTCCTCGCTATAGCCAGGACACAGGGATGCAGGGGTCAAGC ATGTAAGCACCAACTGGCCCAATCCCCTTCACTAATAAACCTCTGAGCTG CAAGAAAA	chrX	102210301	102231795
a0002c0002t0001	0/0	1758	12	5	5	0	0	2	TCP11X1_chrX_102210301_102231795	TCP11X1	AGACG others(1753): Show AGACGCAGAGGCGAGGCCGCCAGTCGAGGACGAGGAGGAGATAACATCAA GATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAG AGAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAG AGTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGA AGTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCT ATGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCG GAGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAG TACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGG AGACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAG ATAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGG GGCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTC TGCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATA AGAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAAT GAAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGC AGGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGAT AAACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGC CACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCT CCTGCAGCATGGCGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAG CCCCCCAGTCCAACAATGGTGCTATACCAAGGCTACCTGAACCTCCTCCT CTGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAA TCCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCC TCAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATC ACCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGG AATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTG TCTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAG CAGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGA AAGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTC AAATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGG AGGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTC TCAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAG ATCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGA GCCTAACTGATAGTGCTGGACCCCAGCTATGGCAACAGGGACTCAGGAGA GAGAGGTCAGCATGTTTCTGGGAGGACATCACCTGTGGTTAGTCGAACAG TCAGCCCTCTTCCTCGCTATAGCCAGGACACAGGGATGCAGGGGTCAAGC ATGTAAGCACCAACTGGCCCAATCCCCTTCACTAATAAACCTCTGAGCTG CAAGAAAA	chrX	102210301	102231795
a0002c0003t0001	0/0	1758	3	3	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	AGACG others(1753): Show AGACGCAGAGGCGAGGCCGCCAGTCGAGGACGAGGAGGAGATAACATCAA GATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAG AGAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAG AGTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGA AGTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCT ATGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCG GAGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAG TACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGG AGACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAG ATAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGG GGCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTC TGCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATA AGAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAAT GAAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGC AGGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGAT AAACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGC CACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCT CCTGCAGCATGGCGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAG CCCCCCAGTCCAACAATGGTGCTATACCAAGGTTACCTGAACCTCCTCCT CTGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAA TCCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCC TCAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATC ACCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGG AATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTG TCTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAG CAGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGA AAGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTC AAATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGG AGGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTC TCAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAG ATCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGA GCCTAACTGATAGTGCTGGACCCCAGCTATGGCAACAGGGACTCAGGAGA GAGAGGTCAGCATGTTTCTGGGAGGACATCACCTGTGGTTAGTCGAACAG TCAGCCCTCTTCCTCGCTATAGCCAGGACACAGGGATGCAGGGGTCAAGC ATGTAAGCACCAACTGGCCCAATCCCCTTCACTAATAAACCTCTGAGCTG CAAGAAAA	chrX	102210301	102231795
a0002c0003t0002	0/0	1758	3	0	0	3	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	AGACG others(1753): Show AGACGCAGAGGCGAGGCCGCCAGTCGAGGACGAGGAGGAGATAACATCAA GATGCCGAAGACTGAGGAAACTGTGCTCCAGAATGATCCCAGTGTAGCAG AGAATGGGGCCCCTGAGCCTAAAACACCAGGGCAGAGCCAGAAAAGCAAG AGTTTCTGTTTAGATGACCAGTCTCCTGATCTGATAGAGACAGTTAATGA AGTTTCCAAGCTGAGCATTTCACATGAAATTGTAGTAAACCAAGATTTCT ATGTGGAAGAGACCATTTTGCCTCCAAACAGTGTAGAAGGCAGGTTTGCG GAGGCAATGTACAATGCTTTTTGGAACCATCTGAAAGAACAGCTATTGAG TACTCCTCCTGACTTCACTTGTGCCCTTGAACTTCTAAAAGATGTTAAGG AGACCTTGCTATCACTGCTATTACCATGGCAGAACCGCCTAAGAAATGAG ATAGAAGAAGCTCTGGACACAGATCTCCTCAAGCAGGAAGCAGAACATGG GGCCCTGGATGTCCCTCATCTTTCTAACTACATTCTCAATTTGATGGCTC TGCTATGTGCACCGGTTCGAGATGAAGCGATACAGAAACTAGAGACCATA AGAGATCCAGTGCAGTTACTGAGGGGCATCCTCCGTGTTCTGGGCCTAAT GAAAATGGACATGGTGAACTATACCATCCAGAGCTTTCGACCCTACCTGC AGGAACATTCCATCCAGTATGAACAAGCTAAATTCCAGGAACTCCTTGAT AAACAGCCCAGTCTCCTCGATTATACCACAAAATGGCTAACCAAAGCAGC CACAGACATCACTACACTATGTCCGAGTTCTCCTGACTCACCTAGCTCCT CCTGCAGCATGGCGTGTTCACTTCCAAGCGGGGCAGGTAACAATTCAGAG CCCCCCAGTCCAACAATGGTGCTATACCAAGGTTACCTGAACCTCCTCCT CTGGGATCTTGAAAACGTAGAATTCCCAGAGACTCTGCTGATGGACAGAA TCCGGCTCCAGGAACTGGCATTCCAGTTGCACCAGTTAACTGTCCTGGCC TCAGTCTTGCTAGTGGCCAGAAGCTTCTCTGGTGAAGTTTTATTCAGATC ACCTGAATTTGTGGATAGACTGAAATGCACCACCAAGGCCCTAACTGAGG AATTTATCTCCAGGCCTGAAGAGACTATGCTGAGTGTGAGTGAACAGGTG TCTCAGGAAGTCCATCAAGGCCTTAAGGACATGGGCCTCACTACTCTGAG CAGTGAAAACACAGCATCTCTTCTAGGCCAACTCCAGAACATCACCAAGA AAGAGAACTGCATTCGTAGCATTGTTGATCAGTGGATCCGTTTTTTTCTC AAATGCTGTTTGCTTCATGGCATGCAGGAGTCTCTGCTACACTTTCCTGG AGGCCTCATTCTCATTGAAAAGGAGTTGGCAGAACTGGGCTGGAAGTTTC TCAATCTGATGCATCATAATCAGCAGGTATTTGGCCCATACTATGCTGAG ATCCTAAAACACATCATCCATCCAGCTCAAGCACAAGAAACAGATGTGGA GCCTAACTGATAGTGCTGGATCCCAGCTATGGCAACAGGGACTCAGGAGA GAGAGGTCAGCATGTTTCTGGGAGGACATCACCTGTGGTTAGTCGAACAG TCAGCCCTCTTCCTCGCTATAGCCAGGACACAGGGATGCAGGGGTCAAGC ATGTAAGCACCAACTGGCCCAATCCCCTTCACTAATAAACCTCTGAGCTG CAAGAAAA	chrX	102210301	102231795

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	4	0	2	2	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0002	0/0	6	1	2	0	2	1	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0004	0/0	2	0	0	2	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0005	0/0	2	2	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0006	0/0	2	0	0	2	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0009	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0014	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0001c0001t0001g0018	0/0	1	0	0	0	1	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0001	0/0	2	0	2	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0003	0/0	3	3	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0012	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0015	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0016	0/0	1	0	0	0	0	1	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0017	0/0	1	0	1	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0020	0/0	1	0	1	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0021	0/0	1	0	1	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0002t0001g0022	0/0	1	0	0	0	0	1	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0003t0001g0010	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0003t0001g0011	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0003t0001g0013	0/0	1	1	0	0	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0003t0002g0007	0/0	1	0	0	1	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0003t0002g0008	0/0	1	0	0	1	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
a0002c0003t0002g0019	0/0	1	0	0	1	0	0	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00280	hp1	a0001	c0001	t0001	g0002	EUR	FIN	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG00423	hp1	a0001	c0001	t0001	g0004	EAS	CHS	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG00423	hp2	a0001	c0001	t0001	g0006	EAS	CHS	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG00738	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01071	hp1	a0002	c0002	t0001	g0021	AMR	PUR	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01071	hp2	a0002	c0002	t0001	g0017	AMR	PUR	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01175	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01175	hp2	a0002	c0002	t0001	g0001	AMR	PUR	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01515	hp1	a0001	c0001	t0001	g0018	EUR	IBS	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG01981	hp2	a0002	c0002	t0001	g0020	AMR	PEL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02132	hp1	a0001	c0001	t0001	g0004	EAS	KHV	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02293	hp2	a0002	c0002	t0001	g0001	AMR	PEL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02622	hp1	a0001	c0001	t0001	g0005	AFR	GWD	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02622	hp2	a0002	c0002	t0001	g0003	AFR	GWD	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02970	hp1	a0002	c0002	t0001	g0012	AFR	ESN	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG02970	hp2	a0001	c0001	t0001	g0009	AFR	ESN	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG03017	hp1	a0002	c0002	t0001	g0016	SAS	PJL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG03195	hp1	a0002	c0002	t0001	g0015	AFR	ESN	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG03195	hp2	a0002	c0003	t0001	g0013	AFR	ESN	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG03490	hp1	a0001	c0001	t0001	g0002	SAS	PJL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA18963	hp1	a0001	c0001	t0001	g0006	EAS	JPT	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA18971	hp1	a0002	c0003	t0002	g0008	EAS	JPT	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA19000	hp1	a0002	c0003	t0002	g0019	EAS	JPT	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA19004	hp1	a0002	c0003	t0002	g0007	EAS	JPT	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA19030	hp1	a0002	c0002	t0001	g0003	AFR	LWK	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA19030	hp2	a0001	c0001	t0001	g0005	AFR	LWK	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA19240	hp1	a0002	c0002	t0001	g0003	AFR	YRI	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA19240	hp2	a0001	c0001	t0001	g0014	AFR	YRI	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA20805	hp1	a0001	c0001	t0001	g0002	EUR	TSI	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA20905	hp1	a0002	c0002	t0001	g0022	SAS	GIH	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
HG03471	hp1	a0002	c0003	t0001	g0011	AFR	MSL	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA21309	hp1	a0001	c0001	t0001	g0002	AFR	LWK	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795
NA21309	hp2	a0002	c0003	t0001	g0010	AFR	LWK	TCP11X1_chrX_102210301_102231795	TCP11X1	chrX	102210301	102231795

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:102223867	T T	C C	1	a0002 a0002	18	HG01071.hp1 HG01071.hp2 HG01175.hp2 others(15): Show HG01071.hp1 HG01071.hp2 HG01175.hp2 HG01981.hp2 HG02293.hp2 HG02622.hp2 HG02970.hp1 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1 NA19030.hp1 NA19240.hp1 NA20905.hp1 NA21309.hp2	missense_variant	MODERATE	c.812T>C c.812T>C	p.Val271Ala p.Val271Ala	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	7/10	863/1758	812/1509	271/502			chrX	102223867

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:102223937	T T	C C	1	a0002c0002 a0002c0002	12	HG01071.hp1 HG01071.hp2 HG01175.hp2 others(9): Show HG01071.hp1 HG01071.hp2 HG01175.hp2 HG01981.hp2 HG02293.hp2 HG02622.hp2 HG02970.hp1 HG03017.hp1 HG03195.hp1 NA19030.hp1 NA19240.hp1 NA20905.hp1	synonymous_variant	LOW	c.882T>C c.882T>C	p.Gly294Gly p.Gly294Gly	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	7/10	933/1758	882/1509	294/502			chrX	102223937

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:102226608	C C	T T	1	a0002c0003t0002 a0002c0003t0002	3	NA18971.hp1 NA19000.hp1 NA19004.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1	3_prime_UTR_variant	MODIFIER	c.11C>T c.11C>T		TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	10/10				11		chrX	102226608

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:102215698	C C	G G	3	a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022 a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022	3	HG01071.hp1 HG01981.hp2 NA20905.hp1 HG01071.hp1 HG01981.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-11-130C>G c.-11-130C>G	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	1/9		chrX	102215698
chrX:102215786	A A	G G	1	a0002c0003t0002g0019 a0002c0003t0002g0019	1	NA19000.hp1 NA19000.hp1	intron_variant	MODIFIER	c.-11-42A>G c.-11-42A>G	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	1/9		chrX	102215786
chrX:102216562	C C	T T	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.127+597C>T c.127+597C>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	2/9		chrX	102216562
chrX:102218138	A A	G G	1	a0002c0002t0001g0017 a0002c0002t0001g0017	1	HG01071.hp2 HG01071.hp2	intron_variant	MODIFIER	c.230+58A>G c.230+58A>G	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102218138
chrX:102219724	C C	T T	5	a0002c0002t0001g0016 a0002c0002t0001g0017 a0002c0002t0001g0020 others(2): Show a0002c0002t0001g0016 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022	5	HG01071.hp1 HG01071.hp2 HG01981.hp2 others(2): Show HG01071.hp1 HG01071.hp2 HG01981.hp2 HG03017.hp1 NA20905.hp1	intron_variant	MODIFIER	c.230+1644C>T c.230+1644C>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102219724
chrX:102220670	C C	CATATTAT others(14): Show CATATTATATATATATATATAT	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.231-867_231-866ins others(21): Show c.231-867_231-866insTATATATATATATATATATAT	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9	INFO_REALIGN_3_PRIME	chrX	102220670
chrX:102220692	TA TA	T T	3	a0001c0001t0001g0002 a0002c0002t0001g0012 a0002c0003t0001g0013 a0001c0001t0001g0002 a0002c0002t0001g0012 a0002c0003t0001g0013	8	HG00280.hp1 HG00738.hp1 HG01175.hp1 others(5): Show HG00280.hp1 HG00738.hp1 HG01175.hp1 HG02970.hp1 HG03195.hp2 HG03490.hp1 NA20805.hp1 NA21309.hp1	intron_variant	MODIFIER	c.231-848delA c.231-848delA	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220692
chrX:102220692	TATA TATA	T T	2	a0001c0001t0001g0014 a0002c0002t0001g0015 a0001c0001t0001g0014 a0002c0002t0001g0015	2	HG03195.hp1 NA19240.hp2 HG03195.hp1 NA19240.hp2	intron_variant	MODIFIER	c.231-848_231-846del others(3): Show c.231-848_231-846delATA	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220692
chrX:102220693	A A	ATT ATT	3	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0006	5	HG00423.hp1 HG00423.hp2 HG02129.hp1 others(2): Show HG00423.hp1 HG00423.hp2 HG02129.hp1 HG02132.hp1 NA18963.hp1	intron_variant	MODIFIER	c.231-847_231-846ins others(2): Show c.231-847_231-846insTT	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9	INFO_REALIGN_3_PRIME	chrX	102220693
chrX:102220693	A A	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	1	a0002c0002t0001g0017 a0002c0002t0001g0017	1	HG01071.hp2 HG01071.hp2	intron_variant	MODIFIER	c.231-847_231-846ins others(15): Show c.231-847_231-846insTTTTTTTTTTTTTTT	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9	INFO_REALIGN_3_PRIME	chrX	102220693
chrX:102220693	A A	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0002c0002t0001g0003 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0002c0002t0001g0003 a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019	10	HG01981.hp1 HG02293.hp1 HG02622.hp1 others(7): Show HG01981.hp1 HG02293.hp1 HG02622.hp1 HG02622.hp2 NA18971.hp1 NA19000.hp1 NA19004.hp1 NA19030.hp1 NA19030.hp2 NA19240.hp1	intron_variant	MODIFIER	c.231-848A>T c.231-848A>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220693
chrX:102220694	TA TA	T T	3	a0001c0001t0001g0009 a0002c0003t0001g0010 a0002c0003t0001g0011 a0001c0001t0001g0009 a0002c0003t0001g0010 a0002c0003t0001g0011	3	HG02970.hp2 HG03471.hp1 NA21309.hp2 HG02970.hp2 HG03471.hp1 NA21309.hp2	intron_variant	MODIFIER	c.231-846delA c.231-846delA	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220694
chrX:102220695	A A	T T	12	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(9): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0002c0002t0001g0003 a0002c0002t0001g0012 a0002c0002t0001g0017 a0002c0003t0001g0013 a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019	24	HG00280.hp1 HG00423.hp1 HG00423.hp2 others(21): Show HG00280.hp1 HG00423.hp1 HG00423.hp2 HG00738.hp1 HG01071.hp2 HG01175.hp1 HG01981.hp1 HG02129.hp1 HG02132.hp1 HG02293.hp1 HG02622.hp1 HG02622.hp2 HG02970.hp1 HG03195.hp2 HG03490.hp1 NA18963.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1 NA19030.hp1 NA19030.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp1	intron_variant	MODIFIER	c.231-846A>T c.231-846A>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220695
chrX:102220696	T T	TATATATA others(10): Show TATATATATATATATATA	1	a0002c0002t0001g0020 a0002c0002t0001g0020	1	HG01981.hp2 HG01981.hp2	intron_variant	MODIFIER	c.231-845_231-844ins others(17): Show c.231-845_231-844insATATATATATATATATA	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220696
chrX:102220697	T T	A A	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.231-844T>A c.231-844T>A	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220697
chrX:102220698	T T	A A	1	a0002c0002t0001g0020 a0002c0002t0001g0020	1	HG01981.hp2 HG01981.hp2	intron_variant	MODIFIER	c.231-843T>A c.231-843T>A	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220698
chrX:102220884	A A	G G	3	a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019 a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019	3	NA18971.hp1 NA19000.hp1 NA19004.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1	intron_variant	MODIFIER	c.231-657A>G c.231-657A>G	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102220884
chrX:102221012	A A	T T	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.231-529A>T c.231-529A>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9		chrX	102221012
chrX:102221893	A A	G G	3	a0002c0002t0001g0015 a0002c0003t0001g0011 a0002c0003t0001g0013 a0002c0002t0001g0015 a0002c0003t0001g0011 a0002c0003t0001g0013	3	HG03195.hp1 HG03195.hp2 HG03471.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1	intron_variant	MODIFIER	c.351+232A>G c.351+232A>G	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	4/9		chrX	102221893
chrX:102222364	C C	T T	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.352-31C>T c.352-31C>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	4/9		chrX	102222364
chrX:102222365	T T	C C	1	a0002c0002t0001g0022 a0002c0002t0001g0022	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.352-30T>C c.352-30T>C	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	4/9		chrX	102222365
chrX:102222863	G G	T T	1	a0002c0002t0001g0017 a0002c0002t0001g0017	1	HG01071.hp2 HG01071.hp2	intron_variant	MODIFIER	c.572+248G>T c.572+248G>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	5/9		chrX	102222863
chrX:102223655	C C	A A	3	a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019 a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019	3	NA18971.hp1 NA19000.hp1 NA19004.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1	intron_variant	MODIFIER	c.710-110C>A c.710-110C>A	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	6/9		chrX	102223655
chrX:102224513	G G	C C	1	a0002c0002t0001g0017 a0002c0002t0001g0017	1	HG01071.hp2 HG01071.hp2	intron_variant	MODIFIER	c.1112+248G>C c.1112+248G>C	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	8/9		chrX	102224513
chrX:102224822	G G	C C	2	a0002c0003t0001g0011 a0002c0003t0001g0013 a0002c0003t0001g0011 a0002c0003t0001g0013	2	HG03195.hp2 HG03471.hp1 HG03195.hp2 HG03471.hp1	intron_variant	MODIFIER	c.1113-205G>C c.1113-205G>C	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	8/9		chrX	102224822
chrX:102225335	C C	T T	1	a0001c0001t0001g0006 a0001c0001t0001g0006	2	HG00423.hp2 NA18963.hp1 HG00423.hp2 NA18963.hp1	intron_variant	MODIFIER	c.1276+145C>T c.1276+145C>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9		chrX	102225335
chrX:102225480	CTCTTT CTCTTT	C C	2	a0002c0002t0001g0003 a0002c0002t0001g0012 a0002c0002t0001g0003 a0002c0002t0001g0012	4	HG02622.hp2 HG02970.hp1 NA19030.hp1 others(1): Show HG02622.hp2 HG02970.hp1 NA19030.hp1 NA19240.hp1	intron_variant	MODIFIER	c.1276+307_1276+311d others(7): Show c.1276+307_1276+311delCTTTT	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9	INFO_REALIGN_3_PRIME	chrX	102225480
chrX:102225498	T T	C C	1	a0002c0003t0002g0007 a0002c0003t0002g0007	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.1276+308T>C c.1276+308T>C	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9		chrX	102225498
chrX:102225655	T T	A A	3	a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022 a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022	3	HG01071.hp1 HG01981.hp2 NA20905.hp1 HG01071.hp1 HG01981.hp2 NA20905.hp1	intron_variant	MODIFIER	c.1276+465T>A c.1276+465T>A	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9		chrX	102225655
chrX:102225711	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	2	HG00423.hp1 HG02132.hp1 HG00423.hp1 HG02132.hp1	intron_variant	MODIFIER	c.1276+521G>A c.1276+521G>A	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9		chrX	102225711
chrX:102225781	G G	A A	4	a0002c0002t0001g0015 a0002c0003t0002g0007 a0002c0003t0002g0008 others(1): Show a0002c0002t0001g0015 a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019	4	HG03195.hp1 NA18971.hp1 NA19000.hp1 others(1): Show HG03195.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1	intron_variant	MODIFIER	c.1277-584G>A c.1277-584G>A	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9		chrX	102225781
chrX:102226327	A A	T T	20	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(17): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0018 a0002c0002t0001g0001 a0002c0002t0001g0003 a0002c0002t0001g0012 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0017 a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022 a0002c0003t0001g0010 a0002c0003t0001g0011 a0002c0003t0001g0013 a0002c0003t0002g0007 a0002c0003t0002g0008 a0002c0003t0002g0019	33	HG00280.hp1 HG00423.hp1 HG00423.hp2 others(30): Show HG00280.hp1 HG00423.hp1 HG00423.hp2 HG00738.hp1 HG01071.hp1 HG01071.hp2 HG01175.hp1 HG01175.hp2 HG01515.hp1 HG01981.hp1 HG01981.hp2 HG02129.hp1 HG02132.hp1 HG02293.hp1 HG02293.hp2 HG02622.hp2 HG02970.hp1 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1 HG03490.hp1 NA18963.hp1 NA18963.hp2 NA18971.hp1 NA19000.hp1 NA19004.hp1 NA19030.hp1 NA19240.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1277-38A>T c.1277-38A>T	TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	9/9		chrX	102226327

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JoGo Haplotype Explorer

TCP11X1_chrX_102210301_102231795 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 2)

Coding Level Haplotype Info (Total: 3)

Transcript Level Haplotype Info (Total: 4)

Genebody Level Haplotype Info (Total: 23)

Haplotype Details by Sample (Haploid Level) (Total: 37)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 32)

Annotation (Repeats)

Annotation (SNP Array)