view | regionname | pos | ref | alt | annotation | impact | samples | ahapids | chapids | thapids | thapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SLMAP_chr3_57751309_57935003 | 57924934 | G | GTGTTTTT | intron_variant | MODIFIER | HG01175.hp1 HG01257.hp2 HG01358.hp2 others(26): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0013a0001c0001t0014others(3): Show | a0001c0001t0004g0075 a0001c0001t0004g0076 a0001c0001t0004g0081 others(26): Show |
29 | 308 | 0.0942 | 7 | c.244 others(24): Show |
SLMAP | ENSG00000163681.17 | transcript | ENST00000671191.1 | protein_coding | 23/24 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | ||||||
SLN_chr11_107702378_107717056 | 107714501 | T | TAAAAAAA | upstream_gene_variant | MODIFIER | HG01257.hp1 HG02027.hp2 HG02080.hp2 others(32): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0001 a0001c0001t0001g0006 a0001c0001t0001g0021 others(2): Show |
35 | 296 | 0.1182 | 7 | c.-26 others(18): Show |
SLN | ENSG00000170290.4 | transcript | ENST00000305991.3 | protein_coding | 2446 | chr11 | TogoVar | |||||||
SLPI_chr20_45247239_45259564 | 45258285 | T | TTAGATAG | upstream_gene_variant | MODIFIER | HG00597.hp2 HG00639.hp1 HG00639.hp2 others(69): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0001c0001t0003a0002c0002t0001 | a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0007 others(4): Show |
72 | 137 | 0.5255 | 7 | c.-37 others(18): Show |
SLPI | ENSG00000124107.5 | transcript | ENST00000338380.2 | protein_coding | 3722 | chr20 | TogoVar | |||||||
SLU7_chr5_160396641_160424081 | 160412523 | T | TAAAAAAA | splice_region_variant others(1): Show |
LOW | HG00140.hp2 HG00408.hp2 HG00609.hp1 others(77): Show |
a0001 | a0001c0001 | a0001c0001t0003a0001c0001t0010a0001c0001t0012others(2): Show | a0001c0001t0003g0003 a0001c0001t0003g0008 a0001c0001t0003g0014 others(30): Show |
80 | 271 | 0.2952 | 7 | c.571 others(19): Show |
SLU7 | ENSG00000164609.10 | transcript | ENST00000297151.9 | protein_coding | 5/15 | chr5 | TogoVar | |||||||
SLX1B_chr16_29449533_29463219 | 29451065 | A | ATATATAT | upstream_gene_variant | MODIFIER | HG01255.hp2 HG02559.hp1 HG03579.hp1 others(8): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0001 | a0001c0001t0001g0006 a0001c0001t0001g0015 a0002c0002t0001g0011 |
11 | 130 | 0.0846 | 7 | c.-36 others(18): Show |
SLX1B | ENSG00000181625.18 | transcript | ENST00000330181.10 | protein_coding | 3467 | chr16 | TogoVar | |||||||
SLX4IP_chr20_10430305_10633030 | 10493859 | C | CTTTTTTT | intron_variant | MODIFIER | HG00099.hp2 HG00621.hp1 HG01099.hp1 others(51): Show |
a0001a0003a0004 | a0001c0001a0001c0011a0003c0003others(1): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(19): Show | a0001c0001t0001g0213 a0001c0001t0001g0237 a0001c0001t0002g0003 others(51): Show |
54 | 149 | 0.3624 | 7 | c.27+ others(24): Show |
SLX4IP | ENSG00000149346.15 | transcript | ENST00000334534.10 | protein_coding | 2/7 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SMAD2_chr18_47803957_47935659 | 47850462 | A | ATATAATG | intron_variant | MODIFIER | HG00099.hp2 HG00323.hp2 HG00423.hp1 others(81): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0005a0001c0001t0013others(67): Show | a0001c0001t0001g0197 a0001c0001t0001g0204 a0001c0001t0001g0252 others(81): Show |
84 | 226 | 0.3717 | 7 | c.784 others(22): Show |
SMAD2 | ENSG00000175387.16 | transcript | ENST00000262160.11 | protein_coding | 7/10 | chr18 | TogoVar | |||||||
SMAD2_chr18_47803957_47935659 | 47850462 | A | ATATTATG | intron_variant | MODIFIER | HG00741.hp2 HG01243.hp1 HG02922.hp2 others(7): Show |
a0001 | a0001c0001 | a0001c0001t0006a0001c0001t0020a0001c0001t0109others(6): Show | a0001c0001t0006g0210 a0001c0001t0006g0232 a0001c0001t0020g0233 others(7): Show |
10 | 152 | 0.0658 | 7 | c.784 others(22): Show |
SMAD2 | ENSG00000175387.16 | transcript | ENST00000262160.11 | protein_coding | 7/10 | chr18 | TogoVar | |||||||
SMAD3_chr15_67060602_67200169 | 67150847 | C | CTTTTTTT | intron_variant | MODIFIER | HG01109.hp2 HG01243.hp2 HG01346.hp2 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(2): Show | a0001c0001t0001g0131 a0001c0001t0001g0265 a0001c0001t0002g0149 others(4): Show |
7 | 49 | 0.1429 | 7 | c.207 others(26): Show |
SMAD3 | ENSG00000166949.17 | transcript | ENST00000327367.9 | protein_coding | 1/8 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
SMAD3_chr15_67060602_67200169 | 67183000 | A | ATATATAT | intron_variant | MODIFIER | HG02630.hp2 NA18612.hp2 NA19066.hp2 |
a0001 | a0001c0001 | a0001c0001t0003a0001c0001t0013a0001c0001t0015 | a0001c0001t0003g0006 a0001c0001t0013g0209 a0001c0001t0015g0029 |
3 | 175 | 0.0171 | 7 | c.871 others(24): Show |
SMAD3 | ENSG00000166949.17 | transcript | ENST00000327367.9 | protein_coding | 6/8 | chr15 | TogoVar | |||||||
SMAD4_chr18_51025213_51090042 | 51062851 | G | GTTTTTTT | intron_variant | MODIFIER | HG00735.hp2 HG01192.hp1 HG02040.hp2 others(6): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0003a0001c0001t0018others(2): Show | a0001c0001t0002g0039 a0001c0001t0002g0075 a0001c0001t0003g0041 others(5): Show |
9 | 132 | 0.0682 | 7 | c.956 others(24): Show |
SMAD4 | ENSG00000141646.16 | transcript | ENST00000342988.8 | protein_coding | 8/11 | INFO_REALIGN_3_PRIME | chr18 | TogoVar | ||||||
SMAD5_chr5_136127845_136187733 | 136183496 | C | CAAAAAAA | downstream_gene_variant | MODIFIER | HG00323.hp1 HG00423.hp2 HG00597.hp2 others(23): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0018a0001c0001t0020 | a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0010 others(19): Show |
26 | 138 | 0.1884 | 7 | c.*60 others(18): Show |
SMAD5 | ENSG00000113658.18 | transcript | ENST00000545279.6 | protein_coding | 764 | chr5 | TogoVar | |||||||
SMAD6_chr15_66697236_66787849 | 66766207 | G | GGGGGGCA | intron_variant | MODIFIER | HG00438.hp1 HG00438.hp2 HG00621.hp1 others(29): Show |
a0001 | a0001c0001a0001c0002a0001c0016others(2): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0006others(10): Show | a0001c0001t0001g0018 a0001c0001t0001g0097 a0001c0001t0001g0180 others(27): Show |
32 | 334 | 0.0958 | 7 | c.953 others(26): Show |
SMAD6 | ENSG00000137834.15 | transcript | ENST00000288840.10 | protein_coding | 3/3 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
SMAD9_chr13_36839831_36925238 | 36843366 | C | CTTTTTTT | downstream_gene_variant | MODIFIER | HG01243.hp1 HG01243.hp2 HG02055.hp1 others(29): Show |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0006a0001c0001t0007others(9): Show | a0001c0001t0004g0092 a0001c0001t0004g0102 a0001c0001t0004g0108 others(29): Show |
32 | 268 | 0.1194 | 7 | c.*53 others(18): Show |
SMAD9 | ENSG00000120693.15 | transcript | ENST00000379826.5 | protein_coding | 1464 | chr13 | TogoVar | |||||||
SMAGP_chr12_51239558_51275415 | 51269931 | G | GCCCGCGC | intron_variant | MODIFIER | HG00280.hp2 HG00423.hp2 HG00438.hp1 others(48): Show |
a0001 | a0001c0001 | a0001c0001t0002a0001c0001t0003a0001c0001t0016 | a0001c0001t0002g0028 a0001c0001t0002g0029 a0001c0001t0002g0310 others(43): Show |
51 | 408 | 0.1250 | 7 | c.-39 others(22): Show |
SMAGP | ENSG00000170545.17 | transcript | ENST00000603798.6 | protein_coding | 1/3 | chr12 | TogoVar | |||||||
SMAP1_chr6_70662883_70867003 | 70763106 | C | CTTTTTTT | intron_variant | MODIFIER | HG00597.hp1 HG02055.hp1 HG02080.hp2 others(10): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0007a0001c0001t0008others(1): Show | a0001c0001t0001g0124 a0001c0001t0001g0130 a0001c0001t0001g0140 others(10): Show |
13 | 85 | 0.1529 | 7 | c.338 others(24): Show |
SMAP1 | ENSG00000112305.15 | transcript | ENST00000370455.8 | protein_coding | 3/10 | INFO_REALIGN_3_PRIME | chr6 | TogoVar | ||||||
SMAP2_chr1_40368727_40428322 | 40380529 | C | CTTTTTTT | intron_variant | MODIFIER | HG00408.hp1 HG00408.hp2 HG00423.hp2 others(187): Show |
a0001a0002a0003 | a0001c0001a0001c0003a0001c0005others(2): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0005others(4): Show | a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0008 others(145): Show |
190 | 200 | 0.9500 | 7 | c.103 others(24): Show |
SMAP2 | ENSG00000084070.12 | transcript | ENST00000372718.8 | protein_coding | 1/9 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
SMARCA1_chrX_129441506_129528490 | 129500123 | T | TAAAAAAA | intron_variant | MODIFIER | HG02647.hp1 HG03041.hp2 HG03098.hp1 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0010 a0001c0001t0001g0092 a0001c0001t0001g0093 others(3): Show |
7 | 236 | 0.0297 | 7 | c.116 others(24): Show |
SMARCA1 | ENSG00000102038.16 | transcript | ENST00000371121.5 | protein_coding | 9/24 | chrX | TogoVar | |||||||
SMARCA2_chr9_2010347_2198620 | 2014596 | C | CTATTTTT | upstream_gene_variant | MODIFIER | HG00280.hp1 HG00323.hp1 HG00323.hp2 others(190): Show |
a0001a0002a0003others(10): Show | a0001c0001a0001c0003a0001c0008others(46): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(73): Show | a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0040 others(190): Show |
193 | 314 | 0.6147 | 7 | c.-84 others(16): Show |
SMARCA2 | ENSG00000080503.25 | transcript | ENST00000349721.8 | protein_coding | 750 | chr9 | TogoVar | |||||||
SMARCA2_chr9_2010347_2198620 | 2088879 | A | ATTTTTTT | intron_variant | MODIFIER | HG01175.hp2 HG01891.hp1 HG02258.hp2 others(8): Show |
a0001a0002a0003others(3): Show | a0001c0003a0002c0005a0002c0023others(4): Show | a0001c0003t0001a0001c0003t0002a0002c0005t0001others(7): Show | a0001c0003t0001g0190 a0001c0003t0002g0248 a0001c0003t0002g0267 others(8): Show |
11 | 182 | 0.0604 | 7 | c.288 others(24): Show |
SMARCA2 | ENSG00000080503.25 | transcript | ENST00000349721.8 | protein_coding | 19/33 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SMARCA4_chr19_10956030_11067273 | 11001659 | T | TGACCCTC | intron_variant | MODIFIER | HG01255.hp1 HG01516.hp2 HG01981.hp1 others(14): Show |
a0001a0002 | a0001c0002a0001c0003a0001c0007others(6): Show | a0001c0002t0001a0001c0003t0001a0001c0007t0001others(6): Show | a0001c0002t0001g0208 a0001c0003t0001g0006 a0001c0007t0001g0017 others(14): Show |
17 | 284 | 0.0599 | 7 | c.181 others(26): Show |
SMARCA4 | ENSG00000127616.22 | transcript | ENST00000344626.10 | protein_coding | 11/34 | chr19 | TogoVar | |||||||
SMARCA5_chr4_143508702_143562486 | 143512996 | C | CAAAAAAA | upstream_gene_variant | MODIFIER | HG00099.hp1 HG00140.hp1 HG00558.hp2 others(78): Show |
a0001a0003 | a0001c0002a0001c0003a0001c0005others(2): Show | a0001c0002t0001a0001c0002t0006a0001c0002t0023others(13): Show | a0001c0002t0001g0002 a0001c0002t0001g0004 a0001c0002t0001g0005 others(49): Show |
81 | 235 | 0.3447 | 7 | c.-92 others(16): Show |
SMARCA5 | ENSG00000153147.6 | transcript | ENST00000283131.4 | protein_coding | 705 | chr4 | TogoVar | |||||||
SMARCAD1_chr4_94202865_94296292 | 94255738 | A | ATTTGATT | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp1 HG00423.hp1 others(144): Show |
a0001a0006 | a0001c0001a0001c0004a0001c0006others(2): Show | a0001c0001t0001a0001c0001t0006a0001c0001t0010others(7): Show | a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0007 others(132): Show |
147 | 320 | 0.4594 | 7 | c.128 others(26): Show |
SMARCAD1 | ENSG00000163104.18 | transcript | ENST00000354268.9 | protein_coding | 9/23 | INFO_REALIGN_3_PRIME | chr4 | TogoVar | ||||||
SMARCB1_chr22_23781966_23843009 | 23797000 | C | CTTTTTTT | intron_variant | MODIFIER | HG02074.hp1 HG02132.hp2 HG02630.hp1 others(7): Show |
a0001 | a0001c0001a0001c0005 | a0001c0001t0010a0001c0001t0019a0001c0001t0030others(1): Show | a0001c0001t0010g0311 a0001c0001t0010g0313 a0001c0001t0010g0314 others(6): Show |
10 | 306 | 0.0327 | 7 | c.362 others(24): Show |
SMARCB1 | ENSG00000099956.20 | transcript | ENST00000644036.2 | protein_coding | 3/8 | INFO_REALIGN_3_PRIME | chr22 | TogoVar | ||||||
SMARCC1_chr3_47580269_47786893 | 47604699 | C | CTTTTTTT | intron_variant | MODIFIER | HG00280.hp1 HG01169.hp1 HG02015.hp2 others(11): Show |
a0001a0005 | a0001c0001a0001c0002a0005c0010 | a0001c0001t0001a0001c0001t0002a0001c0001t0008others(2): Show | a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(11): Show |
14 | 34 | 0.4118 | 7 | c.304 others(26): Show |
SMARCC1 | ENSG00000173473.11 | transcript | ENST00000254480.10 | protein_coding | 26/27 | chr3 | TogoVar | |||||||
SMARCC1_chr3_47580269_47786893 | 47671196 | A | ACAACAAC | intron_variant | MODIFIER | HG02145.hp1 HG02922.hp1 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0180 a0001c0001t0001g0181 |
2 | 121 | 0.0165 | 7 | c.184 others(24): Show |
SMARCC1 | ENSG00000173473.11 | transcript | ENST00000254480.10 | protein_coding | 18/27 | chr3 | TogoVar | |||||||
SMARCC1_chr3_47580269_47786893 | 47708084 | T | TTTTTTTC | intron_variant | MODIFIER | HG00621.hp1 HG01074.hp2 HG01109.hp2 others(22): Show |
a0001a0003a0006 | a0001c0001a0001c0002a0001c0009others(2): Show | a0001c0001t0002a0001c0002t0002a0001c0009t0002others(2): Show | a0001c0001t0002g0003 a0001c0001t0002g0097 a0001c0001t0002g0099 others(22): Show |
25 | 217 | 0.1152 | 7 | c.919 others(24): Show |
SMARCC1 | ENSG00000173473.11 | transcript | ENST00000254480.10 | protein_coding | 9/27 | chr3 | TogoVar | |||||||
SMC1B_chr22_45339063_45418599 | 45362599 | C | CAACTCAA | intron_variant | MODIFIER | HG02129.hp1 NA18612.hp2 NA18947.hp2 others(1): Show |
a0003 | a0003c0003 | a0003c0003t0001 | a0003c0003t0001g0196 a0003c0003t0001g0202 a0003c0003t0001g0246 others(1): Show |
4 | 358 | 0.0112 | 7 | c.256 others(24): Show |
SMC1B | ENSG00000077935.17 | transcript | ENST00000357450.9 | protein_coding | 16/24 | chr22 | TogoVar | |||||||
SMC1B_chr22_45339063_45418599 | 45372716 | C | CTTTTTTT | intron_variant | MODIFIER | HG00621.hp2 HG00673.hp1 HG01943.hp1 others(15): Show |
a0001a0003a0005others(2): Show | a0001c0002a0001c0004a0001c0008others(5): Show | a0001c0002t0001a0001c0004t0003a0001c0008t0003others(5): Show | a0001c0002t0001g0015 a0001c0002t0001g0026 a0001c0002t0001g0052 others(14): Show |
18 | 117 | 0.1538 | 7 | c.205 others(24): Show |
SMC1B | ENSG00000077935.17 | transcript | ENST00000357450.9 | protein_coding | 12/24 | chr22 | TogoVar | |||||||
SMC1B_chr22_45339063_45418599 | 45409609 | T | TAAATAAA | intron_variant | MODIFIER | HG01952.hp1 HG02165.hp1 NA19079.hp2 |
a0001 | a0001c0004 | a0001c0004t0003 | a0001c0004t0003g0019 a0001c0004t0003g0020 a0001c0004t0003g0297 |
3 | 249 | 0.0120 | 7 | c.110 others(22): Show |
SMC1B | ENSG00000077935.17 | transcript | ENST00000357450.9 | protein_coding | 1/24 | chr22 | TogoVar | |||||||
SMC2_chr9_104089309_104146419 | 104094525 | T | TGGCGGGA | intron_variant | MODIFIER | HG02622.hp2 HG02818.hp2 HG03130.hp2 |
a0001a0005 | a0001c0003a0005c0006 | a0001c0003t0003a0005c0006t0011 | a0001c0003t0003g0037 a0005c0006t0011g0038 a0005c0006t0011g0039 |
3 | 148 | 0.0203 | 7 | c.-62 others(20): Show |
SMC2 | ENSG00000136824.19 | transcript | ENST00000374793.8 | protein_coding | 1/24 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SMC3_chr10_110562695_110611048 | 110594107 | C | CATTTGGT | intron_variant | MODIFIER | HG00408.hp1 HG00408.hp2 HG00423.hp1 others(304): Show |
a0001a0002 | a0001c0001a0001c0002a0001c0004others(3): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(26): Show | a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(218): Show |
307 | 326 | 0.9417 | 7 | c.196 others(24): Show |
SMC3 | ENSG00000108055.11 | transcript | ENST00000361804.5 | protein_coding | 18/28 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | ||||||
SMC3_chr10_110562695_110611048 | 110607292 | C | CAAAAAAA | downstream_gene_variant | MODIFIER | HG00609.hp1 HG00741.hp1 HG00741.hp2 others(36): Show |
a0001 | a0001c0001a0001c0002a0001c0004 | a0001c0001t0001a0001c0001t0003a0001c0001t0012others(4): Show | a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0023 others(30): Show |
39 | 58 | 0.6724 | 7 | c.*29 others(18): Show |
SMC3 | ENSG00000108055.11 | transcript | ENST00000361804.5 | protein_coding | 1245 | chr10 | TogoVar | |||||||
SMC4_chr3_160394650_160439953 | 160399889 | A | ACCCCTCC | intron_variant | MODIFIER | HG01069.hp2 HG02717.hp2 HG02886.hp2 others(3): Show |
a0001 | a0001c0001 | a0001c0001t0006a0001c0001t0010 | a0001c0001t0006g0046 a0001c0001t0006g0047 a0001c0001t0006g0048 others(2): Show |
6 | 330 | 0.0182 | 7 | c.-6+ others(20): Show |
SMC4 | ENSG00000113810.16 | transcript | ENST00000357388.8 | protein_coding | 1/23 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | ||||||
SMC5_chr9_70253978_70359873 | 70309318 | C | CTTTTTTT | intron_variant | MODIFIER | HG00438.hp1 HG01081.hp1 HG01358.hp2 others(4): Show |
a0001a0005 | a0001c0001a0005c0007 | a0001c0001t0002a0001c0001t0021a0005c0007t0002 | a0001c0001t0002g0201 a0001c0001t0002g0240 a0001c0001t0002g0241 others(4): Show |
7 | 26 | 0.2692 | 7 | c.157 others(26): Show |
SMC5 | ENSG00000198887.9 | transcript | ENST00000361138.7 | protein_coding | 11/24 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SMCHD1_chr18_2650726_2810017 | 2663721 | A | ATTTTTTT | intron_variant | MODIFIER | HG01081.hp1 HG01167.hp1 HG01192.hp2 others(20): Show |
a0002a0004a0009others(1): Show | a0002c0001a0004c0008a0009c0020others(1): Show | a0002c0001t0005a0002c0001t0014a0002c0001t0017others(8): Show | a0002c0001t0005g0005 a0002c0001t0005g0007 a0002c0001t0005g0008 others(20): Show |
23 | 299 | 0.0769 | 7 | c.187 others(24): Show |
SMCHD1 | ENSG00000101596.17 | transcript | ENST00000320876.11 | protein_coding | 1/47 | INFO_REALIGN_3_PRIME | chr18 | TogoVar | ||||||
SMCHD1_chr18_2650726_2810017 | 2679480 | C | CAAAAAAA | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp2 others(113): Show |
a0001a0002a0008others(2): Show | a0001c0002a0001c0004a0001c0005others(8): Show | a0001c0002t0001a0001c0002t0002a0001c0002t0031others(17): Show | a0001c0002t0001g0014 a0001c0002t0001g0015 a0001c0002t0001g0016 others(112): Show |
116 | 133 | 0.8722 | 7 | c.638 others(24): Show |
SMCHD1 | ENSG00000101596.17 | transcript | ENST00000320876.11 | protein_coding | 5/47 | INFO_REALIGN_3_PRIME | chr18 | TogoVar | ||||||
SMCHD1_chr18_2650726_2810017 | 2708908 | A | ATATATAT | intron_variant | MODIFIER | HG00280.hp2 HG00673.hp1 HG02135.hp2 others(3): Show |
a0001 | a0001c0002 | a0001c0002t0001a0001c0002t0002 | a0001c0002t0001g0017 a0001c0002t0001g0163 a0001c0002t0001g0182 others(3): Show |
6 | 295 | 0.0203 | 7 | c.226 others(24): Show |
SMCHD1 | ENSG00000101596.17 | transcript | ENST00000320876.11 | protein_coding | 17/47 | chr18 | TogoVar | |||||||
SMCHD1_chr18_2650726_2810017 | 2759571 | C | CTTTTTTT | intron_variant | MODIFIER | HG00423.hp1 HG00558.hp1 HG00609.hp1 others(59): Show |
a0001a0002a0003others(1): Show | a0001c0002a0001c0004a0001c0005others(9): Show | a0001c0002t0001a0001c0002t0037a0001c0004t0001others(15): Show | a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0110 others(59): Show |
62 | 81 | 0.7654 | 7 | c.434 others(26): Show |
SMCHD1 | ENSG00000101596.17 | transcript | ENST00000320876.11 | protein_coding | 34/47 | INFO_REALIGN_3_PRIME | chr18 | TogoVar | ||||||
SMCHD1_chr18_2650726_2810017 | 2777515 | C | CCAGCTTT | intron_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp2 others(228): Show |
a0001a0002a0006others(4): Show | a0001c0002a0001c0004a0001c0005others(13): Show | a0001c0002t0001a0001c0002t0002a0001c0002t0031others(38): Show | a0001c0002t0001g0014 a0001c0002t0001g0015 a0001c0002t0001g0016 others(227): Show |
231 | 338 | 0.6834 | 7 | c.536 others(24): Show |
SMCHD1 | ENSG00000101596.17 | transcript | ENST00000320876.11 | protein_coding | 42/47 | chr18 | TogoVar | |||||||
SMCHD1_chr18_2650726_2810017 | 2785670 | A | AAAAAAAG | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp2 HG00280.hp2 others(24): Show |
a0001 | a0001c0002a0001c0004 | a0001c0002t0001a0001c0002t0002a0001c0002t0032others(1): Show | a0001c0002t0001g0015 a0001c0002t0001g0016 a0001c0002t0001g0017 others(24): Show |
27 | 35 | 0.7714 | 7 | c.571 others(26): Show |
SMCHD1 | ENSG00000101596.17 | transcript | ENST00000320876.11 | protein_coding | 45/47 | INFO_REALIGN_3_PRIME | chr18 | TogoVar | ||||||
SMCO2_chr12_27441736_27507185 | 27477634 | C | CTTTTTTT | intron_variant | MODIFIER | HG02080.hp1 HG03239.hp2 HG03688.hp2 others(5): Show |
a0002a0003 | a0002c0003a0003c0013 | a0002c0003t0001a0002c0003t0003a0003c0013t0006 | a0002c0003t0001g0251 a0002c0003t0003g0022 a0002c0003t0003g0130 others(4): Show |
8 | 168 | 0.0476 | 7 | c.512 others(24): Show |
SMCO2 | ENSG00000165935.10 | transcript | ENST00000535986.2 | protein_coding | 5/8 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | ||||||
SMCO2_chr12_27441736_27507185 | 27507137 | G | GAATTGAA | downstream_gene_variant | MODIFIER | HG02055.hp1 HG02258.hp2 HG02717.hp2 others(6): Show |
a0003 | a0003c0004 | a0003c0004t0005 | a0003c0004t0005g0023 a0003c0004t0005g0032 a0003c0004t0005g0252 others(4): Show |
9 | 358 | 0.0251 | 7 | c.*50 others(18): Show |
SMCO2 | ENSG00000165935.10 | transcript | ENST00000535986.2 | protein_coding | 4953 | chr12 | TogoVar | |||||||
SMG1_chr16_18799860_18931408 | 18831770 | A | ATACATAT | intron_variant | MODIFIER | HG02451.hp1 HG03139.hp1 HG03453.hp2 |
a0001 | a0001c0004 | a0001c0004t0004 | a0001c0004t0004g0019 a0001c0004t0004g0020 a0001c0004t0004g0026 |
3 | 202 | 0.0149 | 7 | c.879 others(26): Show |
SMG1 | ENSG00000157106.18 | transcript | ENST00000446231.7 | protein_coding | 51/62 | chr16 | TogoVar | |||||||
SMG6_chr17_2054843_2308785 | 2114954 | A | AATAAAAT | intron_variant | MODIFIER | HG00099.hp2 HG00140.hp2 HG00597.hp2 others(55): Show |
a0002a0003a0005others(5): Show | a0002c0002a0003c0003a0005c0013others(7): Show | a0002c0002t0001a0002c0002t0002a0003c0003t0001others(20): Show | a0002c0002t0001g0014 a0002c0002t0001g0031 a0002c0002t0001g0095 others(55): Show |
58 | 151 | 0.3841 | 7 | c.335 others(28): Show |
SMG6 | ENSG00000070366.14 | transcript | ENST00000263073.11 | protein_coding | 13/18 | chr17 | TogoVar | |||||||
SMG6_chr17_2054843_2308785 | 2145643 | C | CAAAAAAA | intron_variant | MODIFIER | HG02145.hp2 HG03486.hp2 HG03579.hp2 others(3): Show |
a0002a0004 | a0002c0002a0004c0004 | a0002c0002t0001a0002c0002t0002a0004c0004t0001 | a0002c0002t0001g0050 a0002c0002t0002g0049 a0004c0004t0001g0052 others(3): Show |
6 | 127 | 0.0472 | 7 | c.335 others(28): Show |
SMG6 | ENSG00000070366.14 | transcript | ENST00000263073.11 | protein_coding | 13/18 | chr17 | TogoVar | |||||||
SMG6_chr17_2054843_2308785 | 2242689 | T | TAAAAAAA | intron_variant | MODIFIER | HG00621.hp1 HG00642.hp1 HG02015.hp2 others(6): Show |
a0006a0012a0016 | a0006c0005a0012c0021a0016c0014 | a0006c0005t0001a0006c0005t0004a0006c0005t0006others(4): Show | a0006c0005t0001g0111 a0006c0005t0004g0119 a0006c0005t0004g0121 others(6): Show |
9 | 42 | 0.2143 | 7 | c.272 others(26): Show |
SMG6 | ENSG00000070366.14 | transcript | ENST00000263073.11 | protein_coding | 9/18 | chr17 | TogoVar | |||||||
SMG7_chr1_183467499_183559191 | 183515676 | A | AACCAGAC | intron_variant | MODIFIER | HG00408.hp1 HG00423.hp1 HG01168.hp2 others(17): Show |
a0003 | a0003c0003 | a0003c0003t0001 | a0003c0003t0001g0013 a0003c0003t0001g0014 a0003c0003t0001g0018 others(14): Show |
20 | 358 | 0.0559 | 7 | c.62- others(20): Show |
SMG7 | ENSG00000116698.22 | transcript | ENST00000688051.1 | protein_coding | 2/22 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
SMIM10L1_chr12_11166194_11181016 | 11177472 | T | TGGCGGGG | downstream_gene_variant | MODIFIER | HG02165.hp2 HG03195.hp1 HG03486.hp2 others(7): Show |
a0001 | a0001c0002 | a0001c0002t0003a0001c0002t0019 | a0001c0002t0003g0000 a0001c0002t0019g0000 |
10 | 257 | 0.0389 | 7 | c.*59 others(18): Show |
SMIM10L1 | ENSG00000256537.5 | transcript | ENST00000622602.2 | protein_coding | 1457 | chr12 | TogoVar | |||||||
SMIM10_chrX_134985991_134997473 | 134986639 | T | TTTCTTTC | upstream_gene_variant | MODIFIER | HG00423.hp1 HG00673.hp1 NA18957.hp2 |
a0001 | a0001c0001 | a0001c0001t0004 | a0001c0001t0004g0000 | 3 | 169 | 0.0178 | 7 | c.-44 others(18): Show |
SMIM10 | ENSG00000184785.6 | transcript | ENST00000330288.6 | protein_coding | 4351 | chrX | TogoVar |