JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	external
PLXNA3_chrX_154453281_154482779	154467144	C C	CACCA CACCA	frameshift_variant others(1): Show frameshift_variant splice_region_variant	HIGH	NA18974.hp1 NA18974.hp1	a0014 a0014	a0014c0018 a0014c0018	a0014c0018t0091 a0014c0018t0091	a0014c0018t0091g0055 a0014c0018t0091g0055	1	262	0.0038	4	c.319 others(13): Show c.3197_3200dupCCAA	p.Thr others(6): Show p.Thr1068fs	PLXNA3	ENSG00000130827.6	transcript	ENST00000369682.4	protein_coding	18/33	3376/10885	3201/5616	1067/1871	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNA3_chrX_154453281_154482779	154472671	TC TC	T T	frameshift_variant frameshift_variant	HIGH	HG00408.hp2 HG00408.hp2	a0000 a0000	a0000c0020 a0000c0020	a0000c0020t0100 a0000c0020t0100	a0000c0020t0100g0051 a0000c0020t0100g0051	1	262	0.0038	-1	c.560 others(5): Show c.5604delC	p.Ser others(6): Show p.Ser1869fs	PLXNA3	ENSG00000130827.6	transcript	ENST00000369682.4	protein_coding	33/33	5779/10885	5604/5616	1868/1871	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153765534	G G	GT GT	frameshift_variant others(1): Show frameshift_variant start_lost	HIGH	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0012 a0001c0007t0012	a0001c0007t0012g0048 a0001c0007t0012g0048	1	308	0.0033	1	c.-1d others(3): Show c.-1dupT	p.Met others(3): Show p.Met1fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	2/36	122/6153	1/5730	1/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153766908	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.81_ others(6): Show c.81_82insA	p.Cys others(4): Show p.Cys28fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	203/6153	82/5730	28/1909		chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767007	AC AC	A A	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.182 others(4): Show c.182delC	p.Pro others(4): Show p.Pro61fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	303/6153	182/5730	61/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767297	AC AC	A A	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.473 others(4): Show c.473delC	p.Pro others(5): Show p.Pro158fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	594/6153	473/5730	158/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767348	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.525 others(4): Show c.525dupG	p.Leu others(5): Show p.Leu176fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	647/6153	526/5730	176/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767463	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA19089.hp1 NA19089.hp1	a0030 a0030	a0030c0058 a0030c0058	a0030c0058t0001 a0030c0058t0001	a0030c0058t0001g0052 a0030c0058t0001g0052	1	308	0.0033	-1	c.639 others(4): Show c.639delC	p.Phe others(5): Show p.Phe214fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	760/6153	639/5730	213/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767584	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA19089.hp1 NA19089.hp1	a0030 a0030	a0030c0058 a0030c0058	a0030c0058t0001 a0030c0058t0001	a0030c0058t0001g0052 a0030c0058t0001g0052	1	308	0.0033	-1	c.760 others(4): Show c.760delC	p.Arg others(5): Show p.Arg254fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	881/6153	760/5730	254/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767731	G G	GT GT	frameshift_variant frameshift_variant	HIGH	NA19089.hp1 NA19089.hp1	a0030 a0030	a0030c0058 a0030c0058	a0030c0058t0001 a0030c0058t0001	a0030c0058t0001g0052 a0030c0058t0001g0052	1	308	0.0033	1	c.905 others(4): Show c.905dupT	p.Phe others(5): Show p.Phe303fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	1027/6153	906/5730	302/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153767902	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA18956.hp1 NA18956.hp1	a0028 a0028	a0028c0029 a0028c0029	a0028c0029t0001 a0028c0029t0001	a0028c0029t0001g0070 a0028c0029t0001g0070	1	308	0.0033	1	c.107 others(5): Show c.1078dupC	p.Leu others(5): Show p.Leu360fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	3/36	1200/6153	1079/5730	360/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153768285	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.112 others(5): Show c.1128dupC	p.Ser others(5): Show p.Ser377fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	4/36	1250/6153	1129/5730	377/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153768361	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.120 others(5): Show c.1201delG	p.Ala others(5): Show p.Ala401fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	4/36	1322/6153	1201/5730	401/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153769917	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.161 others(5): Show c.1612dupC	p.Arg others(5): Show p.Arg538fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	7/36	1734/6153	1613/5730	538/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153770569	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.194 others(5): Show c.1940delC	p.Pro others(5): Show p.Pro647fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	10/36	2061/6153	1940/5730	647/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153770976	C C	CT CT	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.214 others(5): Show c.2149dupT	p.Ser others(5): Show p.Ser717fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	12/36	2271/6153	2150/5730	717/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771056	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.223 others(5): Show c.2230dupC	p.Leu others(5): Show p.Leu744fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	12/36	2352/6153	2231/5730	744/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771362	A A	AG AG	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.230 others(5): Show c.2309dupG	p.Glu others(5): Show p.Glu771fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	13/36	2431/6153	2310/5730	770/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771511	C C	CCA CCA	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	2	c.237 others(11): Show c.2375_2376dupAC	p.Pro others(5): Show p.Pro793fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	14/36	2498/6153	2377/5730	793/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771525	GC GC	G G	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.238 others(5): Show c.2389delC	p.His others(5): Show p.His797fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	14/36	2510/6153	2389/5730	797/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771598	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.246 others(5): Show c.2463dupC	p.Cys others(5): Show p.Cys823fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	14/36	2585/6153	2464/5730	822/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771634	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.249 others(5): Show c.2498dupC	p.Ala others(5): Show p.Ala834fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	14/36	2620/6153	2499/5730	833/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771878	C C	CG CG	frameshift_variant frameshift_variant	HIGH	NA18977.hp1 NA18977.hp1	a0026 a0026	a0026c0040 a0026c0040	a0026c0040t0001 a0026c0040t0001	a0026c0040t0001g0002 a0026c0040t0001g0002	1	308	0.0033	1	c.253 others(5): Show c.2534dupG	p.Pro others(5): Show p.Pro846fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	15/36	2656/6153	2535/5730	845/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771880	G G	GT GT	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.253 others(5): Show c.2535dupT	p.Pro others(5): Show p.Pro846fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	15/36	2657/6153	2536/5730	846/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771946	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.260 others(5): Show c.2601dupG	p.Gln others(5): Show p.Gln868fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	15/36	2723/6153	2602/5730	868/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771980	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.263 others(5): Show c.2636dupA	p.Asn others(5): Show p.Asn879fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	15/36	2758/6153	2637/5730	879/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153771989	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.264 others(5): Show c.2646dupC	p.Ser others(5): Show p.Ser883fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	15/36	2768/6153	2647/5730	883/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153772231	C C	CG CG	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.272 others(5): Show c.2722dupG	p.Val others(5): Show p.Val908fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	16/36	2844/6153	2723/5730	908/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153772255	C C	CCA CCA	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	2	c.274 others(11): Show c.2744_2745dupCA	p.Gly others(5): Show p.Gly916fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	16/36	2867/6153	2746/5730	916/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153772278	C C	CA CA	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.276 others(5): Show c.2767dupA	p.Thr others(5): Show p.Thr923fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	16/36	2889/6153	2768/5730	923/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153772902	G G	GA GA	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.279 others(10): Show c.2792_2793insA	p.Ser others(5): Show p.Ser931fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	17/36	2914/6153	2793/5730	931/1909		chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153772920	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.281 others(5): Show c.2815dupC	p.Gln others(5): Show p.Gln939fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	17/36	2937/6153	2816/5730	939/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773241	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.291 others(5): Show c.2919dupG	p.Cys others(5): Show p.Cys974fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	18/36	3041/6153	2920/5730	974/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773301	T T	TC TC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.298 others(5): Show c.2980dupC	p.Leu others(5): Show p.Leu994fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	18/36	3102/6153	2981/5730	994/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773311	C C	CT CT	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.299 others(5): Show c.2991dupT	p.Gly others(5): Show p.Gly998fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	18/36	3113/6153	2992/5730	998/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773324	C C	CT CT	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.300 others(10): Show c.3001_3002insT	p.Gln others(6): Show p.Gln1001fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	18/36	3123/6153	3002/5730	1001/1909		chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773519	G G	GA GA	frameshift_variant others(1): Show frameshift_variant splice_region_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.308 others(10): Show c.3085_3086insA	p.Gly others(6): Show p.Gly1029fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	19/36	3207/6153	3086/5730	1029/1909		chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773544	G G	GC GC	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.311 others(5): Show c.3111dupC	p.Thr others(6): Show p.Thr1038fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	19/36	3233/6153	3112/5730	1038/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773594	G G	GA GA	frameshift_variant frameshift_variant	HIGH	NA18941.hp2 NA18941.hp2	a0013 a0013	a0013c0032 a0013c0032	a0013c0032t0004 a0013c0032t0004	a0013c0032t0004g0085 a0013c0032t0004g0085	1	308	0.0033	1	c.316 others(10): Show c.3160_3161insA	p.Ala others(6): Show p.Ala1054fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	19/36	3282/6153	3161/5730	1054/1909		chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153773698	TG TG	T T	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.327 others(5): Show c.3270delG	p.Leu others(6): Show p.Leu1091fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	19/36	3391/6153	3270/5730	1090/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153774053	T T	TA TA	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	1	c.347 others(10): Show c.3474_3475insA	p.Ala others(6): Show p.Ala1159fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	20/36	3596/6153	3475/5730	1159/1909		chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153774267	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA19082.hp1 NA19082.hp1	a0022 a0022	a0022c0043 a0022c0043	a0022c0043t0001 a0022c0043t0001	a0022c0043t0001g0001 a0022c0043t0001g0001	1	308	0.0033	1	c.360 others(5): Show c.3602dupC	p.Arg others(6): Show p.Arg1202fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	21/36	3724/6153	3603/5730	1201/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153774273	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA18977.hp1 NA18977.hp1	a0026 a0026	a0026c0040 a0026c0040	a0026c0040t0001 a0026c0040t0001	a0026c0040t0001g0002 a0026c0040t0001g0002	1	308	0.0033	1	c.361 others(5): Show c.3610dupC	p.His others(6): Show p.His1204fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	21/36	3732/6153	3611/5730	1204/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153774448	T T	TG TG	frameshift_variant frameshift_variant	HIGH	NA19058.hp1 NA19058.hp1	a0015 a0015	a0015c0037 a0015c0037	a0015c0037t0008 a0015c0037t0008	a0015c0037t0008g0112 a0015c0037t0008g0112	1	308	0.0033	1	c.371 others(5): Show c.3710dupG	p.Val others(6): Show p.Val1239fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	22/36	3832/6153	3711/5730	1237/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153774473	A A	AC AC	frameshift_variant frameshift_variant	HIGH	NA18994.hp1 NA18994.hp1	a0016 a0016	a0016c0034 a0016c0034	a0016c0034t0001 a0016c0034t0001	a0016c0034t0001g0027 a0016c0034t0001g0027	1	308	0.0033	1	c.373 others(5): Show c.3737dupC	p.Leu others(6): Show p.Leu1247fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	22/36	3859/6153	3738/5730	1246/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153774558	AC AC	A A	frameshift_variant frameshift_variant	HIGH	NA19086.hp1 NA19086.hp1	a0031 a0031	a0031c0021 a0031c0021	a0031c0021t0001 a0031c0021t0001	a0031c0021t0001g0084 a0031c0021t0001g0084	1	308	0.0033	-1	c.382 others(5): Show c.3820delC	p.Leu others(6): Show p.Leu1274fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	22/36	3941/6153	3820/5730	1274/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153776000	C C	CT CT	frameshift_variant frameshift_variant	HIGH	NA19003.hp2 NA19003.hp2	a0025 a0025	a0025c0041 a0025c0041	a0025c0041t0010 a0025c0041t0010	a0025c0041t0010g0056 a0025c0041t0010g0056	1	308	0.0033	1	c.451 others(5): Show c.4517dupT	p.Leu others(6): Show p.Leu1506fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	27/36	4639/6153	4518/5730	1506/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153776007	CG CG	C C	frameshift_variant frameshift_variant	HIGH	NA19058.hp1 NA19058.hp1	a0015 a0015	a0015c0037 a0015c0037	a0015c0037t0008 a0015c0037t0008	a0015c0037t0008g0112 a0015c0037t0008g0112	1	308	0.0033	-1	c.452 others(5): Show c.4525delG	p.Glu others(6): Show p.Glu1509fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	27/36	4646/6153	4525/5730	1509/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153776066	C C	CG CG	frameshift_variant frameshift_variant	HIGH	HG01516.hp1 HG03491.hp1 NA18967.hp1 others(1): Show HG01516.hp1 HG03491.hp1 NA18967.hp1 NA18986.hp1	a0006 a0018 a0006 a0018	a0006c0019 a0006c0046 a0018c0036 a0006c0019 a0006c0046 a0018c0036	a0006c0019t0001 a0006c0046t0001 a0018c0036t0001 a0006c0019t0001 a0006c0046t0001 a0018c0036t0001	a0006c0019t0001g0001 a0006c0046t0001g0002 a0018c0036t0001g0118 a0006c0019t0001g0001 a0006c0046t0001g0002 a0018c0036t0001g0118	4	308	0.0130	1	c.458 others(5): Show c.4585dupG	p.Ala others(6): Show p.Ala1529fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	27/36	4707/6153	4586/5730	1529/1909	INFO_REALIGN_3_PRIME	chrX	TogoVar
PLXNB3_chrX_153759249_153784341	153776108	G G	GT GT	frameshift_variant frameshift_variant	HIGH	NA19003.hp2 NA19003.hp2	a0025 a0025	a0025c0041 a0025c0041	a0025c0041t0010 a0025c0041t0010	a0025c0041t0010g0056 a0025c0041t0010g0056	1	308	0.0033	1	c.462 others(10): Show c.4623_4624insT	p.Val others(6): Show p.Val1542fs	PLXNB3	ENSG00000198753.12	transcript	ENST00000361971.10	protein_coding	27/36	4745/6153	4624/5730	1542/1909		chrX	TogoVar

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