Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA1_chr9_104776006_104933155	0/0	a0014	2261	5	0	0	3	2	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0015	2261	4	3	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0016	2261	4	0	0	4	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0017	2261	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0018	2261	2	0	2	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0019	2261	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0020	2261	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0021	2261	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0022	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0023	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0024	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0025	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0026	2261	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0027	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0028	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0029	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0030	2261	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0031	2261	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0032	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0033	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0034	2261	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0035	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0036	2261	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0037	2261	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	a0038	2261	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA2_chr9_137002234_137033237	1/1	a0001	2436	290	84	63	92	16	33	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0002	2436	10	0	7	0	2	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0003	2436	4	0	4	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0004	2436	3	0	0	3	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0005	2436	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0006	2436	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0007	2436	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0008	2436	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0009	2436	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0010	2436	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0011	2436	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0012	2436	1	0	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0013	2436	1	1	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0014	2436	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0015	2436	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0016	2436	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	a0017	2436	1	0	0	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA3_chr16_2270881_2345728	1/1	a0001	1704	240	72	51	72	10	33	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0002	1704	2	0	0	0	2	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0003	1704	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0004	1704	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0005	1704	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0006	1704	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0007	1704	1	0	0	0	0	1	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0008	1704	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728