Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGBL5_chr2_27046668_27075618	1/1	a0001	886	320	83	68	118	16	33	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0002	886	4	3	1	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0003	886	3	3	0	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0004	886	2	1	1	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0005	886	1	0	0	1	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0006	886	1	0	0	0	1	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0007	886	1	0	0	1	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0008	886	1	0	0	0	0	1	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	a0009	886	1	0	0	0	1	0	copy fasta	AGBL5	chr2	27046668	27075618
AGER_chr6_32175969_32189253	0/1	a0001	404	410	95	79	177	16	42	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0002	404	38	0	0	37	0	1	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0003	404	7	0	5	2	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0004	404	2	0	0	2	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0005	404	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0006	404	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0007	404	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	a0008	404	1	0	0	0	0	1	copy fasta	AGER	chr6	32175969	32189253
AGFG1_chr2_227467156_227566217	1/1	a0001	562	325	91	44	138	10	40	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	a0002	562	2	1	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	a0003	562	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG2_chr7_100534203_100573220	1/1	a0001	481	178	33	27	75	10	31	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0002	481	38	20	8	1	3	6	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0003	481	14	14	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0004	481	10	0	0	8	1	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0005	481	1	0	0	1	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0006	481	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0007	481	1	0	1	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0008	481	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0009	481	1	0	0	1	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	a0010	481	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGGF1_chr5_77025404_77070234	1/1	a0001	714	335	81	56	150	10	36	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	a0002	714	96	7	25	51	6	7	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	a0003	714	4	3	1	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	a0004	714	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	a0005	714	1	1	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	a0006	718	1	0	0	0	0	1	copy fasta	AGGF1	chr5	77025404	77070234
AGK_chr7_141546410_141660244	1/1	a0001	422	268	68	43	115	8	32	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	a0002	422	3	2	1	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	a0003	422	1	1	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	a0004	422	1	0	0	1	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	a0005	422	1	1	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGL_chr1_99845361_99929020	1/1	a0001	1532	183	43	39	71	3	25	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0002	1532	35	0	7	26	0	2	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0003	1532	23	11	6	6	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0004	1532	22	0	2	15	0	5	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0005	1532	22	3	4	8	2	5	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0006	1532	5	5	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0007	1532	4	0	0	4	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0008	1532	3	3	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0009	1532	3	3	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020