JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM91A1_chr8_123763439_123820452	0/0	a0005	838	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	1/0	a0006	838	1	0	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	a0007	838	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM91A1_chr8_123763439_123820452	0/0	a0008	838	1	1	0	0	0	0	copy fasta	FAM91A1	chr8	123763439	123820452
FAM98A_chr2_33578660_33604299	1/1	a0001	518	399	91	75	173	14	44	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	a0002	518	2	0	1	0	1	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	a0003	518	1	1	0	0	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	a0004	518	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	a0005	518	1	0	0	0	1	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	a0006	518	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98A_chr2_33578660_33604299	0/0	a0007	518	1	0	0	1	0	0	copy fasta	FAM98A	chr2	33578660	33604299
FAM98B_chr15_38449127_38492710	1/1	a0001	433	357	86	59	159	18	33	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0002	430	30	3	9	15	0	3	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0003	427	4	0	0	1	0	3	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0004	433	3	0	2	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0005	433	1	1	0	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0006	433	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0007	433	1	0	0	0	0	1	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0008	424	1	0	1	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0009	433	1	0	1	0	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98B_chr15_38449127_38492710	0/0	a0010	433	1	0	0	1	0	0	copy fasta	FAM98B	chr15	38449127	38492710
FAM98C_chr19_38398093_38414084	1/1	a0001	349	285	60	53	126	12	32	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0002	350	50	0	5	45	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0003	350	22	6	0	16	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0004	349	5	2	2	0	0	1	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0005	350	4	4	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0006	350	4	4	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0007	348	3	0	0	2	0	1	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0008	350	2	2	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0009	349	2	2	0	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0010	349	1	0	1	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0011	349	1	0	1	0	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM98C_chr19_38398093_38414084	0/0	a0012	349	1	0	0	1	0	0	copy fasta	FAM98C	chr19	38398093	38414084
FAM9A_chrX_8785795_8806383	1/1	a0001	332	277	64	50	124	11	26	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0002	332	7	4	1	0	2	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0003	331	3	0	0	2	0	1	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0004	331	3	0	3	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0005	289	2	0	0	1	0	1	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0006	326	2	0	0	2	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0007	332	2	0	0	2	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0008	331	2	0	2	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0009	333	1	0	0	1	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0010	276	1	0	0	1	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0011	117	1	0	1	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0012	332	1	1	0	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9A_chrX_8785795_8806383	0/0	a0013	332	1	1	0	0	0	0	copy fasta	FAM9A	chrX	8785795	8806383
FAM9B_chrX_9019232_9039127	1/1	a0001	186	255	60	45	112	9	27	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	a0002	185	2	0	0	1	0	1	copy fasta	FAM9B	chrX	9019232	9039127
FAM9B_chrX_9019232_9039127	0/0	a0003	15	1	0	0	1	0	0	copy fasta	FAM9B	chrX	9019232	9039127
FAM9C_chrX_13030617_13049620	1/1	a0001	166	311	70	54	144	13	28	copy fasta	FAM9C	chrX	13030617	13049620