JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM9C_chrX_13030617_13049620	0/0	a0002	166	2	0	0	2	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAM9C_chrX_13030617_13049620	0/0	a0003	166	2	0	0	2	0	0	copy fasta	FAM9C	chrX	13030617	13049620
FAN1_chr15_30898915_30948108	0/1	a0001	1017	189	78	40	46	5	19	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0002	1017	97	4	17	50	6	20	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0003	1017	7	7	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0004	1017	2	0	0	0	2	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0005	1017	2	2	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0006	1017	1	0	1	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0007	1017	1	0	0	0	1	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0008	1017	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0009	1017	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0010	1017	1	0	0	0	0	1	copy fasta	FAN1	chr15	30898915	30948108
FAN1_chr15_30898915_30948108	0/0	a0011	1017	1	1	0	0	0	0	copy fasta	FAN1	chr15	30898915	30948108
FANCA_chr16_89732549_89821647	0/0	a0001	1455	99	27	17	44	2	9	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/1	a0002	1455	74	14	10	31	2	16	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0003	1455	32	9	11	2	2	8	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	1/0	a0004	1455	28	3	18	0	3	3	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0005	1455	21	0	0	19	0	2	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0006	1455	12	10	2	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0007	1455	8	8	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0008	1455	7	0	1	5	1	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0009	1455	6	0	3	0	2	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0010	1455	4	0	2	0	1	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0011	1455	3	0	3	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0012	1455	3	3	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0013	1455	3	3	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0014	1455	2	0	1	0	1	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0015	1455	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0016	1455	2	0	0	2	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0017	1455	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0018	1455	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0019	1455	2	2	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0020	1455	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0021	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0022	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0023	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0024	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0025	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0026	1455	1	0	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0027	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0028	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0029	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0030	1455	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0031	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0032	1455	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0033	524	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0034	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0035	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0036	1455	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0037	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647