JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FANCA_chr16_89732549_89821647	0/0	a0038	1455	1	0	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0039	1455	1	0	0	0	0	1	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0040	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	a0041	1455	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCB_chrX_14838405_14878069	1/1	a0001	859	263	75	49	102	7	28	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	a0002	859	7	0	5	0	2	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	a0003	859	2	2	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	a0004	121	1	0	0	1	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	a0005	859	1	1	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCC_chr9_95094054_95322709	1/1	a0001	558	260	62	52	96	12	36	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0002	558	8	8	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0003	558	3	3	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0004	558	2	0	0	2	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0005	558	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0006	558	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0007	558	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0008	558	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	a0009	558	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCD2OS_chr3_10098937_10113255	1/1	a0001	177	322	73	59	130	16	42	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	a0002	177	20	17	3	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	a0003	177	1	0	1	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	a0004	177	1	1	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	a0005	177	1	1	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	a0006	177	1	0	1	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2_chr3_10021437_10106932	1/1	a0001	1451	145	39	36	40	6	22	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0002	1451	59	30	13	11	1	4	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0003	1451	9	9	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0004	1451	7	1	2	3	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0005	1451	5	0	0	2	0	3	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0006	1451	4	2	1	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0007	1451	3	3	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0008	1451	2	0	1	0	1	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0009	1451	2	2	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0010	1451	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0011	1451	1	0	1	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0012	1451	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0013	1451	1	0	0	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0014	1451	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	a0015	1451	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCE_chr6_35447338_35472102	1/1	a0001	536	321	52	61	162	10	34	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0002	536	54	22	5	18	2	7	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0003	536	13	12	1	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0004	536	5	0	0	5	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0005	536	4	0	0	4	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0006	536	1	0	1	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0007	536	1	0	0	0	0	1	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0008	536	1	0	0	1	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0009	536	1	0	0	0	0	1	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	a0010	536	1	0	0	0	0	1	copy fasta	FANCE	chr6	35447338	35472102
FANCF_chr11_22617533_22630823	1/1	a0001	374	407	94	68	196	11	36	copy fasta	FANCF	chr11	22617533	22630823