JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FANCF_chr11_22617533_22630823	0/0	a0002	374	5	0	5	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	a0003	374	2	2	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	a0004	374	2	0	2	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	a0005	374	2	0	0	0	0	2	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	a0006	374	1	0	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	a0007	374	1	0	0	0	1	0	copy fasta	FANCF	chr11	22617533	22630823
FANCG_chr9_35068839_35084942	1/1	a0001	622	371	77	67	164	16	45	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0002	622	40	11	3	24	0	2	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0003	622	8	8	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0004	622	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0005	622	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0006	488	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0007	622	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0008	622	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0009	622	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	a0010	622	1	0	0	0	0	1	copy fasta	FANCG	chr9	35068839	35084942
FANCI_chr15_89238979_89322131	1/1	a0001	1328	218	77	30	87	8	14	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0002	1328	65	5	15	34	3	8	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0003	1328	25	0	3	19	0	3	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0004	1328	16	2	6	0	4	4	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0005	1328	4	4	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0006	1328	3	0	0	1	0	2	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0007	1328	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0008	1328	1	0	0	0	0	1	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0009	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0010	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0011	1328	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0012	1328	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0013	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0014	1328	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0015	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0016	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0017	1328	1	0	0	0	1	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0018	1328	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0019	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0020	1328	1	0	1	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	a0021	1328	1	0	0	1	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCL_chr2_58154247_58246325	1/1	a0001	375	384	88	68	180	11	35	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	a0002	375	1	0	0	0	1	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	a0003	375	1	0	0	0	0	1	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	a0004	375	1	0	1	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	a0005	375	1	0	0	1	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	a0006	375	1	0	0	1	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	a0007	375	1	0	1	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCM_chr14_45130930_45205890	1/0	a0001	2048	113	24	22	42	5	19	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0002	2048	37	35	2	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0003	2048	29	0	1	23	3	2	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0004	2048	10	9	0	1	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0005	2048	10	1	6	2	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0006	2048	5	2	1	0	1	1	copy fasta	FANCM	chr14	45130930	45205890