JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FANCM_chr14_45130930_45205890	0/0	a0007	2048	5	0	1	4	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0008	2048	4	4	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0009	2048	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0010	2048	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0011	2048	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0012	2048	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0013	2048	2	0	0	2	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0014	2048	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0015	2048	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0016	2048	1	0	0	1	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0017	2048	1	0	0	0	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0018	2048	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0019	2048	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0020	2048	1	0	0	0	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/1	a0021	2048	1	0	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0022	2048	1	0	0	0	0	1	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0023	2048	1	0	0	1	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0024	2048	1	0	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0025	2048	1	0	0	0	1	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0026	2048	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0027	2048	1	0	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	a0028	2048	1	0	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANK1_chr10_125891564_126014592	1/1	a0001	345	363	80	60	169	10	42	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	a0002	345	3	3	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	a0003	345	1	1	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	a0004	345	1	0	1	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	a0005	345	1	0	0	1	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	a0006	345	1	0	1	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FAP_chr2_162165684_162248445	1/1	a0001	760	228	68	50	82	8	18	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	a0002	760	3	3	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	a0003	760	2	2	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	a0004	760	1	1	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAR1_chr11_13663668_13737346	1/1	a0001	515	351	90	59	140	16	44	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	a0002	515	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR2_chr12_29144278_29340616	1/1	a0001	515	318	73	58	141	8	36	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	a0002	515	7	7	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	a0003	515	1	0	0	1	0	0	copy fasta	FAR2	chr12	29144278	29340616
FARP1_chr13_98138094_98460176	1/1	a0001	1045	210	77	40	50	8	33	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	a0002	1045	3	0	2	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	a0003	1045	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	a0004	1045	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	a0005	1045	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	a0006	1045	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	a0007	1045	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP2_chr2_241351285_241499841	1/1	a0001	1054	273	49	44	135	8	35	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0002	1054	34	0	13	21	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0003	1054	28	10	5	6	1	6	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0004	1054	11	9	2	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0005	1054	10	10	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0006	1054	5	0	5	0	0	0	copy fasta	FARP2	chr2	241351285	241499841