JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FARP2_chr2_241351285_241499841	0/0	a0007	1054	2	1	0	0	0	1	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0008	1054	2	1	0	0	1	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0009	1054	2	2	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0010	1054	1	0	0	0	0	1	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0011	1054	1	0	0	0	1	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0012	1054	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0013	1054	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0014	1054	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0015	1054	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0016	1054	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0017	1054	1	0	1	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0018	1054	1	0	0	0	1	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0019	1054	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	a0020	1054	1	0	0	0	0	1	copy fasta	FARP2	chr2	241351285	241499841
FARS2_chr6_5256513_5776583	1/1	a0001	451	141	74	26	20	6	13	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	a0002	451	25	2	6	12	0	5	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	a0003	451	1	0	1	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	a0004	451	1	0	1	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	a0005	451	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	a0006	451	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARSA_chr19_12917479_12938711	1/1	a0001	508	331	96	68	120	16	29	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0002	508	5	0	5	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0003	508	5	0	0	5	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0004	508	1	0	0	0	0	1	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0005	508	1	0	1	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0006	508	1	0	1	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0007	508	1	0	0	1	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	a0008	508	1	0	1	0	0	0	copy fasta	FARSA	chr19	12917479	12938711
FARSB_chr2_222561899_222661092	0/1	a0001	589	285	46	50	138	12	38	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	1/0	a0002	589	56	37	9	4	0	5	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	a0003	589	1	1	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	a0004	589	1	0	0	0	0	1	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	a0005	589	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FASLG_chr1_172654103_172671876	1/1	a0001	281	424	99	78	185	18	42	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	a0002	281	1	1	0	0	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	a0003	172	1	0	0	1	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASN_chr17_82073338_82103236	1/1	a0001	2511	314	64	72	132	15	29	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0002	2511	18	3	9	0	2	4	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0003	2511	17	9	0	3	0	5	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0004	2511	13	0	0	12	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0005	2511	10	10	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0006	2511	5	5	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0007	2511	4	0	0	4	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0008	2511	3	0	0	3	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0009	2511	3	0	0	3	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0010	2511	2	2	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0011	2511	2	0	0	2	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0012	2511	2	0	0	0	0	2	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0013	2511	2	0	2	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	a0014	2511	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236