Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGL_chr1_99845361_99929020	0/0	a0010	1532	2	0	0	2	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0011	1532	2	0	1	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0012	1532	1	0	0	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0013	1532	1	0	1	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0014	1532	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0015	1532	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0016	1532	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0017	1532	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0018	1532	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0019	1532	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0020	1532	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0021	1532	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0022	1532	1	1	0	0	0	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0023	1532	1	0	0	0	1	0	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0024	1532	1	0	0	0	0	1	copy fasta	AGL	chr1	99845361	99929020
AGL_chr1_99845361_99929020	0/0	a0025	1532	1	0	0	1	0	0	copy fasta	AGL	chr1	99845361	99929020
AGMAT_chr1_15566699_15590051	0/0	a0001	352	147	34	28	72	3	10	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	1/1	a0002	352	137	8	29	67	9	22	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	a0003	352	100	47	22	17	4	10	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	a0004	352	3	3	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	a0005	352	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	a0006	352	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	a0007	352	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMO_chr7_15195317_15567015	1/1	a0001	445	192	58	44	51	12	25	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0002	445	20	19	1	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0003	445	7	7	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0004	445	3	3	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0005	445	2	1	1	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0006	445	2	2	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0007	445	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0008	445	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0009	445	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0010	445	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0011	445	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0012	445	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0013	445	1	0	0	0	0	1	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0014	445	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0015	404	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	a0016	445	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGO1_chr1_35878209_35935532	1/1	a0001	857	278	88	54	98	8	28	copy fasta	AGO1	chr1	35878209	35935532
AGO2_chr8_140515156_140640633	1/1	a0001	859	338	92	66	128	8	42	copy fasta	AGO2	chr8	140515156	140640633
AGO3_chr1_35926105_36077500	1/1	a0001	860	258	86	44	104	6	16	copy fasta	AGO3	chr1	35926105	36077500
AGO4_chr1_35803016_35862890	1/1	a0001	861	269	92	42	101	10	22	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	a0002	861	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGPAT1_chr6_32163212_32181084	0/1	a0001	283	441	92	80	208	16	44	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	a0002	283	2	2	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	a0003	283	1	1	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	a0004	283	1	1	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT2_chr9_136668143_136692457	1/1	a0001	278	348	90	62	147	11	36	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	a0002	279	18	0	10	5	1	2	copy fasta	AGPAT2	chr9	136668143	136692457