JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAT2_chr5_151499092_151596331	0/0	a0056	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0057	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0058	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0059	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0060	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0061	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0062	4349	1	0	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0063	4349	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0064	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0065	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0066	4349	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0067	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0068	4349	1	0	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0069	4349	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0070	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0071	4349	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0072	4349	1	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0073	4349	1	0	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0074	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0075	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0076	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	1/0	a0077	4349	1	0	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0078	4349	1	0	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0079	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0080	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0081	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	a0082	4349	1	1	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT3_chr11_92219818_92901473	0/0	a0001	4589	24	14	3	6	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0002	4589	15	9	2	1	0	3	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0003	4589	9	8	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0004	4589	8	3	1	1	0	3	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0005	4589	5	5	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0006	4589	4	3	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	1/0	a0007	4589	4	1	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0008	4589	3	2	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0009	4589	3	0	2	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0010	4589	2	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0011	4589	2	0	0	2	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0012	4589	2	2	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0013	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0014	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0015	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0016	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0017	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0018	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0019	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0020	4589	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0021	4589	1	0	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0022	4589	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0023	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473