JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAT3_chr11_92219818_92901473	0/0	a0024	4589	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0025	4589	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0026	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0027	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0028	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0029	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0030	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0031	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0032	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0033	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0034	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0035	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0036	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0037	4589	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0038	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0039	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0040	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0041	4589	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0042	4589	1	0	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/1	a0043	4589	1	0	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0044	4589	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0045	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0046	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0047	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0048	4589	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	a0049	4589	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT4_chr4_125309955_125497932	0/0	a0001	4983	55	6	14	23	3	9	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0002	4983	49	21	12	9	4	3	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0003	4983	31	0	13	10	4	4	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0004	4983	23	0	1	16	1	5	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0005	4983	19	1	3	13	0	2	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0006	4983	17	0	4	13	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0007	4983	13	2	0	11	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0008	4983	12	12	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0009	4983	12	0	8	4	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/1	a0010	4983	10	6	2	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0011	4983	5	0	0	3	0	2	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0012	4983	4	4	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	1/0	a0013	4983	4	3	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0014	4983	3	3	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0015	4983	3	3	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0016	4983	2	0	1	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0017	4983	2	0	0	2	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0018	4983	2	0	0	2	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0019	4983	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0020	4983	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0021	4983	2	1	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0022	4983	2	1	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0023	4983	2	0	1	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0024	4983	2	0	2	0	0	0	copy fasta	FAT4	chr4	125309955	125497932