JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAT4_chr4_125309955_125497932	0/0	a0025	4983	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0026	4983	2	2	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0027	4983	1	0	0	0	1	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0028	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0029	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0030	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0031	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0032	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0033	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0034	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0035	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0036	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0037	4983	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0038	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0039	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0040	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0041	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0042	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0043	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0044	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0045	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0046	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0047	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0048	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0049	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0050	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0051	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0052	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0053	4983	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0054	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0055	4983	1	0	0	0	1	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0056	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0057	4983	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0058	4983	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0059	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0060	4983	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0061	4983	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0062	4983	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0063	4983	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	a0064	4983	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FATE1_chrX_151711035_151728194	1/1	a0001	183	287	73	57	118	10	27	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	a0002	183	54	6	5	39	1	3	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	a0003	183	1	1	0	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FAU_chr11_65115630_65127134	1/1	a0001	133	391	92	70	170	16	41	copy fasta	FAU	chr11	65115630	65127134
FAU_chr11_65115630_65127134	0/0	a0002	133	1	0	0	0	0	1	copy fasta	FAU	chr11	65115630	65127134
FAXC_chr6_99266168_99354674	1/1	a0001	409	397	82	78	172	18	45	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	a0002	409	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXDC2_chr5_154813492_154855603	1/1	a0001	333	294	98	61	90	13	30	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	a0002	333	10	0	5	0	3	2	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	a0003	333	2	0	0	0	0	2	copy fasta	FAXDC2	chr5	154813492	154855603