JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAXDC2_chr5_154813492_154855603	0/0	a0004	333	1	1	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	a0005	333	1	1	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	a0006	333	1	0	0	0	0	1	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	a0007	333	1	0	0	0	0	1	copy fasta	FAXDC2	chr5	154813492	154855603
FBF1_chr17_75904574_75946042	1/1	a0001	1148	128	18	29	59	5	15	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0002	1148	76	16	9	40	5	6	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0003	1148	50	24	9	11	0	6	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0004	1148	33	27	4	1	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0005	1148	7	0	2	4	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0006	1148	3	3	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0007	1148	3	3	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0008	1148	2	2	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0009	1148	2	0	0	0	0	2	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0010	1148	2	0	0	2	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0011	1148	2	0	0	0	2	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0012	1148	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0013	1148	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0014	1148	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0015	1148	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0016	1148	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0017	1148	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0018	1148	1	0	1	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0019	1148	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0020	1148	1	0	0	0	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	a0021	1148	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBH1_chr10_5885243_5942593	1/1	a0001	12	344	86	60	142	14	40	copy fasta	FBH1	chr10	5885243	5942593
FBLIM1_chr1_15753795_15791589	0/1	a0001	373	199	31	41	86	7	33	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	1/0	a0002	373	149	56	33	38	8	13	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	a0003	373	2	0	0	1	1	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	a0004	373	2	2	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	a0005	373	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	a0006	373	1	0	0	1	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLL1_chr5_168524305_168535634	1/1	a0001	334	250	57	52	94	13	32	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	a0002	334	171	35	20	105	1	10	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	a0003	334	30	1	6	17	2	4	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	a0004	333	5	5	0	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	a0005	334	2	0	0	2	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	a0006	321	1	0	0	1	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	a0007	334	1	0	0	1	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLN1_chr22_45497883_45606135	0/1	a0001	703	332	89	59	126	12	45	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0002	703	4	1	2	0	0	1	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0003	703	3	3	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0004	703	2	2	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	1/0	a0005	703	1	0	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0006	703	1	0	1	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0007	703	1	0	0	1	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0008	703	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	a0009	703	1	0	0	1	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN2_chr3_13544125_13643404	0/0	a0001	1231	111	26	12	64	0	9	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/1	a0002	1231	105	17	27	45	3	12	copy fasta	FBLN2	chr3	13544125	13643404