JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBLN2_chr3_13544125_13643404	1/0	a0003	1231	19	2	8	1	3	4	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0004	1231	17	12	2	3	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0005	1231	15	13	2	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0006	1231	7	7	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0007	1231	6	3	1	1	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0008	1231	4	0	0	0	1	3	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0009	1231	3	3	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0010	1231	2	0	0	0	0	2	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0011	1231	2	0	2	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0012	1233	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0013	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0014	1231	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0015	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0016	1231	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0017	1231	1	0	0	0	1	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0018	1231	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0019	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0020	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0021	1231	1	0	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0022	1231	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0023	1231	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0024	1231	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0025	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0026	1231	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0027	1231	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0028	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0029	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0030	1233	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	a0031	1231	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN5_chr14_91864411_91952694	1/1	a0001	448	360	98	66	138	16	40	copy fasta	FBLN5	chr14	91864411	91952694
FBLN7_chr2_112133385_112193218	1/1	a0001	439	329	82	67	125	17	36	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0002	439	6	5	0	0	1	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0003	438	3	3	0	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0004	439	2	0	2	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0005	439	1	0	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0006	439	1	0	0	0	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0007	439	1	0	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0008	439	1	0	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0009	439	1	0	0	1	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	a0010	439	1	0	0	0	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBL_chr19_39829458_39851379	1/1	a0001	321	377	92	82	145	14	42	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	a0002	321	1	0	0	1	0	0	copy fasta	FBL	chr19	39829458	39851379
FBN1_chr15_48403313_48650709	1/1	a0001	2871	239	71	30	88	10	38	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0002	2871	38	2	3	33	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0003	2871	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0004	2871	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0005	2871	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0006	2871	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0007	2871	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0008	2871	1	0	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709