JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBN1_chr15_48403313_48650709	0/0	a0009	2871	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0010	2871	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0011	2871	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	a0012	2871	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN2_chr5_128252909_128543245	0/1	a0001	2912	93	25	20	25	5	17	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0002	2912	48	14	4	27	1	2	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	1/0	a0003	2912	48	20	15	4	2	6	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0004	2912	14	1	1	11	1	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0005	2912	4	0	0	4	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0006	2912	2	2	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0007	2912	2	0	0	0	0	2	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0008	2912	2	2	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0009	2912	2	0	0	2	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0010	2912	2	0	2	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0011	2912	2	0	0	2	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0012	2912	2	1	0	0	1	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0013	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0014	2912	1	0	0	0	0	1	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0015	2912	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0016	2912	1	0	1	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0017	2912	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0018	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0019	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0020	2912	1	0	1	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0021	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0022	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0023	2912	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0024	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0025	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0026	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	a0027	2912	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN3_chr19_8060402_8154592	0/0	a0001	2809	24	0	4	13	0	7	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0002	2809	21	0	9	12	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0003	2809	16	0	7	3	1	5	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0004	2809	16	0	2	10	2	2	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0005	2809	15	0	4	11	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0006	2809	15	2	4	6	0	3	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0007	2809	14	0	2	7	0	5	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0008	2809	11	1	2	7	0	1	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0009	2809	9	0	1	6	0	2	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0010	2809	7	0	0	7	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0011	2809	7	1	0	6	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0012	2809	6	6	0	0	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/1	a0013	2809	6	0	5	0	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0014	2809	5	0	2	3	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0015	2809	5	0	0	5	0	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0016	2809	5	2	1	0	2	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0017	2809	4	1	0	2	1	0	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0018	2809	4	0	2	0	0	2	copy fasta	FBN3	chr19	8060402	8154592
FBN3_chr19_8060402_8154592	0/0	a0019	2809	4	0	2	2	0	0	copy fasta	FBN3	chr19	8060402	8154592