JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBP1_chr9_94598133_94644518	0/0	a0008	338	1	0	0	1	0	0	copy fasta	FBP1	chr9	94598133	94644518
FBP2_chr9_94553720_94598824	0/0	a0000	0	4	4	0	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/1	a0001	339	317	88	48	140	14	26	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	1/0	a0002	339	54	4	11	27	2	9	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	a0003	339	1	0	0	0	0	1	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	a0004	290	1	0	0	1	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	a0005	339	1	0	0	0	0	1	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	a0006	339	1	0	1	0	0	0	copy fasta	FBP2	chr9	94553720	94598824
FBP2_chr9_94553720_94598824	0/0	a0007	339	1	0	0	0	0	1	copy fasta	FBP2	chr9	94553720	94598824
FBRSL1_chr12_132485151_132590188	0/0	a0000	0	48	10	10	20	1	7	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/1	a0001	1002	82	26	15	14	11	15	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0002	1002	79	10	22	31	3	13	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0003	1002	61	21	10	30	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0004	1002	8	0	0	8	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0005	460	8	1	2	1	0	4	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0006	1002	7	7	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0007	1002	6	0	0	5	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	1/0	a0008	1002	6	2	0	3	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0009	1002	4	0	0	4	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0010	960	4	1	2	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0011	960	4	0	1	2	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0012	1002	3	3	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0013	960	3	0	0	3	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0014	997	2	0	1	0	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0015	1002	2	2	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0016	460	2	0	0	2	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0017	960	2	0	0	1	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0018	1002	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0019	1002	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0020	1002	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0021	460	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0022	1002	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0023	1002	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0024	1002	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0025	1002	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0026	1002	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0027	1002	1	0	0	0	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0028	960	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0029	960	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0030	1002	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0031	1002	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0032	960	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0033	960	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	a0034	92	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRS_chr16_30653431_30675810	1/1	a0001	980	254	75	53	85	13	26	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	a0002	980	4	0	4	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	a0003	980	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	a0004	980	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	a0005	980	1	0	1	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	a0006	980	1	0	0	0	1	0	copy fasta	FBRS	chr16	30653431	30675810