JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXL20_chr17_39247663_39406626	0/0	a0003	436	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL22_chr15_63592387_63606241	1/1	a0001	231	306	87	61	105	13	38	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	a0002	231	20	5	7	0	5	3	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	a0003	231	4	4	0	0	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	a0004	231	3	0	0	3	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	a0005	231	2	0	0	0	0	2	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	a0006	231	1	0	0	0	0	1	copy fasta	FBXL22	chr15	63592387	63606241
FBXL2_chr3_33272442_33393092	1/1	a0001	423	339	81	48	162	12	34	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	a0002	423	1	1	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL3_chr13_77000260_77032159	1/1	a0001	428	411	94	70	195	14	36	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	a0002	428	1	0	0	1	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL4_chr6_98863535_98952946	1/1	a0001	621	365	79	71	171	6	36	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	a0002	621	6	0	6	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	a0003	621	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	a0004	621	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	a0005	621	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL5_chr4_15599381_15660357	1/1	a0001	691	415	94	70	193	14	42	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	a0002	691	1	0	0	1	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL6_chr8_144350431_144363472	0/1	a0001	539	352	79	63	153	16	40	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0002	539	10	5	2	0	1	2	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0003	539	6	4	2	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0004	539	5	0	0	5	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	1/0	a0005	539	4	3	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0006	539	3	3	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0007	539	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0008	539	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0009	539	1	0	0	1	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0010	471	1	0	0	1	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0011	539	1	0	0	0	1	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0012	539	1	0	1	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0013	539	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	a0014	539	1	1	0	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL7_chr5_15495180_15944793	0/0	a0001	491	117	52	22	28	5	10	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	a0002	491	2	2	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	a0003	491	2	2	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	a0004	491	1	0	0	0	1	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL8_chr16_67154957_67169174	1/1	a0001	374	237	90	45	57	10	33	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	a0002	374	2	0	0	0	0	2	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	a0003	374	1	0	0	0	0	1	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	a0004	374	1	0	1	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	a0005	374	1	1	0	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	a0006	374	1	1	0	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	a0007	374	1	0	0	1	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXO10_chr9_37505892_37581380	1/1	a0001	956	283	86	57	93	12	33	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	a0002	956	3	3	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	a0003	956	1	0	1	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	a0004	956	1	0	0	0	0	1	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	a0005	956	1	0	0	1	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	a0006	956	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO11_chr2_47801920_47911498	1/1	a0001	927	307	82	58	117	14	34	copy fasta	FBXO11	chr2	47801920	47911498