JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXO30_chr6_145788502_145819795	0/1	a0002	745	115	13	17	56	7	21	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0003	745	6	0	0	6	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0004	745	5	5	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0005	745	3	0	0	0	2	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0006	745	1	0	0	0	0	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0007	745	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0008	745	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0009	745	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0010	745	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0011	745	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0012	745	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	a0013	745	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO31_chr16_87321987_87388776	1/1	a0001	539	375	96	76	141	16	44	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	a0002	539	1	0	0	1	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO32_chr8_123492889_123546206	1/1	a0001	355	381	72	70	180	16	41	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	a0002	355	24	23	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	a0003	355	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	a0004	355	1	0	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	a0005	355	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO33_chr14_39392684_39437433	1/1	a0001	555	382	92	79	157	8	44	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	a0002	552	3	1	0	0	2	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	a0003	555	2	2	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	a0004	555	1	0	1	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	a0005	555	1	1	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	a0006	555	1	0	0	1	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO34_chr14_55266421_55358611	1/1	a0001	711	171	31	28	85	4	21	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0002	711	78	16	13	31	6	12	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0003	711	39	8	1	29	0	1	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0004	711	24	22	2	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0005	711	14	0	8	0	0	6	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0006	711	4	2	2	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0007	711	2	0	0	2	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0008	711	1	1	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	a0009	711	1	0	0	1	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO36_chr2_229917503_230018119	1/1	a0001	188	284	80	45	110	11	36	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	a0002	188	56	12	19	15	5	5	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	a0003	188	1	0	0	0	0	1	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	a0004	8	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO38_chr5_148378958_148447836	1/1	a0001	1188	257	40	33	151	5	26	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	a0002	1188	95	34	16	30	1	14	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	a0003	1188	16	13	3	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	a0004	1188	1	1	0	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	a0005	1188	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO39_chr17_6771215_6792646	1/1	a0001	442	206	51	38	73	8	34	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0002	442	179	19	16	130	4	10	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0003	442	30	7	16	0	4	3	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0004	442	14	7	7	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0005	442	8	0	0	8	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0006	442	7	4	3	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0007	442	6	6	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646