JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXO39_chr17_6771215_6792646	0/0	a0008	442	3	3	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0009	442	1	0	0	0	0	1	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0010	442	1	1	0	0	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	a0011	442	1	0	0	1	0	0	copy fasta	FBXO39	chr17	6771215	6792646
FBXO3_chr11_33735944_33779520	1/1	a0001	471	370	81	61	174	10	42	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	a0002	471	7	0	3	0	2	2	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	a0003	470	4	0	0	4	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	a0004	471	1	1	0	0	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO40_chr3_121588379_121635295	1/1	a0001	709	225	62	45	79	13	24	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0002	709	172	32	30	87	4	19	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0003	709	2	0	0	2	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0004	709	2	0	0	0	1	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0005	709	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0006	61	1	0	0	0	0	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0007	709	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0008	709	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0009	709	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0010	709	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	a0011	709	1	0	0	0	0	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO41_chr2_73249690_73289478	1/1	a0001	875	227	62	51	77	9	26	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0002	875	121	23	14	66	5	13	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0003	875	8	0	0	8	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0004	875	6	4	1	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0005	875	2	0	2	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0006	869	2	0	1	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0007	875	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0008	875	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0009	875	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0010	875	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0011	875	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0012	875	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0013	871	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	a0014	869	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO42_chr1_16241840_16357480	1/0	a0001	717	190	44	43	68	8	26	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/1	a0002	717	93	44	17	23	3	5	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	a0003	717	9	1	2	5	1	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	a0004	717	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	a0005	717	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO43_chr8_100128351_100150817	1/1	a0001	708	332	63	69	151	12	35	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	a0002	708	55	22	3	25	0	5	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	a0003	708	3	3	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	a0004	708	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	a0005	708	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO44_chr1_11649877_11668327	1/1	a0001	255	401	88	73	175	16	47	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	a0002	255	2	2	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	a0003	255	2	1	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	a0004	255	1	0	0	0	0	1	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	a0005	255	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	a0006	255	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	a0007	255	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327