Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGRN_chr1_1015120_1061116	0/0	a0031	2045	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0032	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRP_chr16_67477571_67488547	1/1	a0001	132	251	92	38	80	11	28	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	a0002	132	3	0	2	0	1	0	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	a0003	132	1	0	0	1	0	0	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	a0004	132	1	0	0	1	0	0	copy fasta	AGRP	chr16	67477571	67488547
AGTPBP1_chr9_85541539_85746954	1/1	a0001	1226	289	86	51	107	8	35	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0002	1226	5	0	0	4	0	1	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0003	1226	1	0	1	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0004	1226	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0005	1226	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0006	1226	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0007	1226	1	1	0	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0008	1226	1	1	0	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0009	1226	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	a0010	1226	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTR1_chr3_148692903_148748003	1/1	a0001	359	348	94	64	143	14	31	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	a0002	359	1	0	0	0	0	1	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	a0003	359	1	0	0	1	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR2_chrX_116165744_116179974	1/1	a0001	363	322	74	48	153	13	32	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	a0002	363	7	4	3	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	a0003	22	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	a0004	363	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	a0005	22	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTRAP_chr1_11731136_11755769	1/1	a0001	159	420	92	84	178	18	46	copy fasta	AGTRAP	chr1	11731136	11755769
AGT_chr1_230697523_230719122	0/1	a0001	476	324	87	45	154	7	30	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	1/0	a0002	476	91	5	27	35	10	13	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	a0003	476	36	4	8	18	1	5	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	a0004	476	1	1	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	a0005	476	1	0	1	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	a0006	476	1	0	0	1	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	a0007	476	1	1	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	a0008	476	1	0	1	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGXT2_chr5_34993102_35052949	0/0	a0001	514	116	24	31	33	10	18	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0002	514	40	17	2	17	0	4	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/1	a0003	514	38	4	11	12	1	9	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0004	514	36	0	11	23	0	2	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0005	514	33	0	2	30	1	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0006	514	27	21	0	6	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0007	514	15	0	2	13	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0008	514	14	0	5	8	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0009	514	11	2	0	9	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0010	514	11	0	6	1	2	2	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0011	514	9	8	1	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0012	514	8	0	1	6	0	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0013	514	5	5	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0014	514	4	4	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0015	514	4	0	0	4	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0016	514	3	1	0	2	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	a0017	514	2	1	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949