JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXO44_chr1_11649877_11668327	0/0	a0008	255	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO45_chr3_196563660_196594059	1/1	a0001	286	444	86	81	210	15	50	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	a0002	284	5	4	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	a0003	290	2	2	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	a0004	286	1	0	0	0	1	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO46_chr19_45705629_45735896	1/1	a0001	603	356	77	66	170	9	32	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	a0002	603	51	9	14	19	1	8	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	a0003	603	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	a0004	603	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	a0005	603	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO47_chr17_38931432_38972403	0/1	a0001	452	328	74	47	155	12	39	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	1/0	a0002	452	5	0	2	0	2	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0003	452	3	0	0	3	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0004	452	2	0	0	2	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0005	452	2	0	0	2	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0006	452	1	1	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0007	452	1	0	0	0	0	1	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0008	452	1	0	1	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	a0009	452	1	1	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO48_chr2_68454422_68472294	1/1	a0001	155	233	90	35	62	14	30	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	a0002	155	1	0	1	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO4_chr5_41920281_41946743	1/1	a0001	387	228	85	55	44	14	28	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	a0002	387	21	1	10	10	0	0	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	a0003	387	1	0	1	0	0	0	copy fasta	FBXO4	chr5	41920281	41946743
FBXO5_chr6_152965535_152988041	0/1	a0001	447	274	77	40	120	6	30	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	1/0	a0002	447	119	1	23	74	7	13	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	a0003	447	40	16	14	7	1	2	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	a0004	447	2	0	0	0	2	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	a0005	447	1	0	1	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	a0006	447	1	0	0	1	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	a0007	447	1	0	0	0	0	1	copy fasta	FBXO5	chr6	152965535	152988041
FBXO6_chr1_11659200_11679354	1/1	a0001	293	320	81	55	131	13	38	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	a0002	293	64	8	17	28	1	10	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	a0003	293	3	3	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	a0004	293	2	2	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	a0005	293	1	0	0	1	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO7_chr22_32469811_32503829	0/0	a0001	522	241	45	37	135	7	17	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	1/1	a0002	522	169	43	32	60	11	21	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	a0003	522	1	0	1	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	a0004	522	1	1	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	a0005	522	1	0	0	1	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	a0006	522	1	1	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO8_chr4_174231658_174288667	0/0	a0001	319	372	88	69	160	12	43	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	a0002	319	1	0	1	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	a0003	319	1	0	0	1	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	a0004	319	1	0	0	0	0	1	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	a0005	319	1	0	0	1	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO9_chr6_53060404_53105873	1/1	a0001	437	309	83	62	128	10	24	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	a0002	437	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXW10B_chr17_15578886_15624704	0/1	a0001	752	92	7	30	33	5	16	copy fasta	FBXW10B	chr17	15578886	15624704