JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXW10B_chr17_15578886_15624704	0/0	a0002	752	69	12	15	30	2	10	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0003	752	47	0	11	27	4	5	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0004	752	40	6	0	31	0	3	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0005	752	34	12	1	20	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0006	752	24	1	0	21	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0007	752	22	17	3	0	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	1/0	a0008	752	16	0	2	12	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0009	752	13	0	4	8	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0010	752	13	6	0	6	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0011	752	8	5	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0012	752	7	2	4	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0013	752	7	5	2	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0014	752	7	1	3	0	1	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0015	431	6	6	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0016	752	5	4	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0017	752	4	0	0	4	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0018	752	3	1	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0019	752	3	0	0	3	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0020	752	3	0	2	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0021	752	3	0	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0022	752	3	3	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0023	752	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0024	752	2	0	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0025	752	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0026	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0027	752	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0028	752	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0029	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0030	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0031	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0032	752	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0033	752	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0034	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0035	752	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0036	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0037	752	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0038	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0039	752	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0040	752	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0041	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0042	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	a0043	752	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10_chr17_18739054_18784349	1/1	a0001	1052	125	26	17	57	6	17	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0002	1052	72	25	27	9	5	6	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0003	1052	25	3	12	6	2	2	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0004	1052	25	3	2	20	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0005	1052	25	8	0	13	1	3	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0006	1052	24	2	0	18	0	4	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0007	1052	22	2	1	16	0	3	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0008	1052	20	7	9	0	1	3	copy fasta	FBXW10	chr17	18739054	18784349