JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXW10_chr17_18739054_18784349	0/0	a0009	1052	16	6	5	0	0	5	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0010	1052	7	3	2	2	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0011	1052	5	4	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0012	1052	3	0	0	3	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0013	1052	2	2	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0014	552	2	0	0	2	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0015	24	2	0	0	2	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0016	1052	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0017	1052	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0018	1052	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0019	1052	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0020	1052	1	0	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0021	1052	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0022	1052	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0023	1052	1	0	0	0	0	1	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0024	1052	1	0	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0025	1052	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	a0026	1052	1	0	0	0	1	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW11_chr5_171856549_172011638	1/1	a0001	563	157	78	32	31	2	12	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	a0002	563	1	0	0	1	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW12_chr3_48367219_48399725	0/1	a0001	464	169	39	23	74	10	22	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0002	464	131	25	27	64	4	11	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0003	464	12	8	4	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	1/0	a0004	464	8	7	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0005	464	6	0	0	0	0	6	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0006	464	5	0	5	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0007	464	3	0	0	0	2	1	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0008	464	3	0	3	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0009	464	2	2	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	a0010	464	1	1	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW2_chr9_120751974_120798416	1/1	a0001	454	328	79	58	156	13	20	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	a0002	454	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	a0003	454	1	0	0	0	1	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW4_chr10_101605666_101700170	1/1	a0001	567	170	59	30	63	5	11	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	a0002	567	31	7	11	5	5	3	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	a0003	567	9	0	3	6	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW5_chr9_136935435_136949738	1/1	a0001	566	419	89	82	181	17	48	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0002	566	4	4	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0003	566	2	0	0	0	0	2	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0004	566	2	0	2	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0005	566	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0006	566	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0007	566	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0008	566	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0009	566	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0010	566	1	0	0	0	1	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	a0011	566	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW7_chr4_152315544_152541092	1/1	a0001	707	264	57	42	133	6	24	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	a0002	707	3	3	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	a0003	707	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092