JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FBXW8_chr12_116905950_117036148	0/1	a0001	598	138	20	23	62	4	28	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	1/0	a0002	598	93	35	9	39	2	7	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0003	598	32	29	1	0	0	2	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0004	598	12	0	0	12	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0005	598	7	7	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0006	598	2	1	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0007	72	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0008	598	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0009	598	1	0	0	0	0	1	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0010	598	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0011	598	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	a0012	598	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW9_chr19_12683916_12701631	1/1	a0001	458	317	35	66	158	17	39	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0002	458	41	40	1	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0003	458	17	15	2	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0004	458	2	2	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0005	458	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0006	458	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0007	458	1	0	0	1	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0008	458	1	0	1	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0009	458	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0010	458	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0011	458	1	0	0	0	1	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0012	458	1	0	0	1	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	a0013	458	1	0	0	0	0	1	copy fasta	FBXW9	chr19	12683916	12701631
FCAMR_chr1_206952967_206975460	1/1	a0001	577	354	73	66	168	9	36	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0002	577	18	0	0	18	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0003	577	10	10	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0004	577	7	7	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0005	577	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0006	577	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0007	577	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0008	577	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0009	577	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0010	577	1	0	0	0	1	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	a0011	577	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAR_chr19_54869235_54896420	0/1	a0001	287	357	59	62	174	17	44	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0002	287	50	28	14	4	1	3	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0003	287	22	4	8	9	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0004	287	2	2	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0005	287	2	2	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0006	287	2	2	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0007	287	1	0	0	0	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0008	287	1	0	0	1	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0009	287	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0010	287	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0011	287	1	0	0	0	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	a0012	287	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCER1A_chr1_159297336_159313202	1/1	a0001	257	407	87	71	185	13	49	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	a0002	257	20	0	0	20	0	0	copy fasta	FCER1A	chr1	159297336	159313202