JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FCER1A_chr1_159297336_159313202	0/0	a0003	257	10	0	0	9	0	1	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	a0004	257	8	0	0	8	0	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	a0005	257	2	0	1	0	1	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	a0006	257	1	1	0	0	0	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1G_chr1_161210295_161224245	1/1	a0001	86	447	90	76	217	18	44	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	a0002	86	1	0	0	1	0	0	copy fasta	FCER1G	chr1	161210295	161224245
FCER2_chr19_7683776_7707131	1/1	a0001	321	360	66	72	180	13	27	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0002	321	79	28	9	16	4	22	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0003	321	7	0	3	3	1	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0004	321	5	5	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0005	321	1	0	1	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0006	321	1	0	0	1	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0007	321	1	0	1	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0008	321	1	1	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	a0009	321	1	0	0	0	0	1	copy fasta	FCER2	chr19	7683776	7707131
FCF1_chr14_74708144_74743620	1/1	a0001	198	360	94	71	151	14	28	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	a0002	198	2	0	0	2	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	a0003	198	1	0	0	1	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	a0004	198	1	0	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCGR1A_chr1_149777694_149796675	1/1	a0001	374	330	65	58	154	15	36	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0002	374	64	13	9	31	2	9	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0003	374	7	6	1	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0004	374	4	4	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0005	374	2	2	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0006	374	2	2	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0007	374	1	1	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0008	91	1	0	0	0	0	1	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0009	374	1	1	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0010	374	1	0	0	0	1	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	a0011	374	1	0	0	1	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR2A_chr1_161500457_161524829	1/0	a0001	317	273	40	40	168	3	21	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/1	a0002	317	159	49	32	48	9	20	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0003	317	12	0	6	0	2	4	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0004	317	4	1	2	0	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0005	317	2	0	0	0	0	2	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0006	317	2	2	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0007	317	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0008	317	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0009	317	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	a0010	317	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2B_chr1_161658143_161683654	1/1	a0001	310	299	49	73	126	12	37	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0002	310	75	28	6	37	0	4	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0003	310	9	9	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0004	310	4	0	0	3	0	1	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0005	310	3	3	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0006	310	2	2	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0007	310	1	0	1	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	a0008	310	1	1	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR3A_chr1_161536759_161554818	1/1	a0001	254	298	55	50	152	11	28	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	a0002	254	135	38	13	69	1	14	copy fasta	FCGR3A	chr1	161536759	161554818