JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FCGR3A_chr1_161536759_161554818	0/0	a0003	254	5	0	3	0	1	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	a0004	254	5	5	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	a0005	254	4	0	2	0	1	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	a0006	254	3	0	2	0	0	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	a0007	254	1	0	0	1	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	a0008	254	1	0	0	0	0	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3B_chr1_161618196_161636176	0/0	a0000	0	1	0	0	1	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0001	233	181	13	31	118	4	15	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0002	233	127	13	21	61	12	20	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0003	233	17	13	2	0	0	2	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0004	233	7	7	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0005	233	6	6	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0006	233	5	5	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	1/0	a0007	233	4	3	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0008	233	2	2	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0009	216	1	0	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0010	233	1	0	0	0	0	1	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0011	233	1	0	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0012	233	1	1	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	a0013	233	1	1	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGRT_chr19_49507661_49531428	1/1	a0001	365	342	96	60	130	12	42	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	a0002	365	10	0	4	6	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	a0003	365	2	0	0	0	0	2	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	a0004	365	1	0	1	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	a0005	365	1	0	1	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCHO1_chr19_17746477_17793561	1/1	a0001	889	343	90	78	113	14	46	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0002	889	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0003	889	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0004	889	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0005	889	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0006	889	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0007	889	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0008	889	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0009	889	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	a0010	889	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO2_chr5_72951041_73095522	1/1	a0001	810	211	42	39	101	5	22	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	a0002	810	71	24	9	30	1	7	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	a0003	810	1	1	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	a0004	810	1	1	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	a0005	810	1	0	0	0	0	1	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	a0006	810	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHSD1_chr5_141634302_141656418	1/0	a0001	690	356	82	70	154	8	41	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/1	a0002	690	14	2	5	0	5	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0003	690	10	0	0	10	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0004	690	9	0	2	6	0	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0005	690	8	0	0	8	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0006	690	5	0	0	5	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0007	690	5	1	0	4	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0008	690	3	2	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0009	690	3	3	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418