JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FCHSD1_chr5_141634302_141656418	0/0	a0010	690	3	1	2	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0011	690	3	3	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0012	690	2	0	2	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0013	690	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0014	690	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0015	690	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0016	690	1	0	0	1	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0017	158	1	0	0	0	1	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0018	690	1	0	0	0	0	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	a0019	690	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD2_chr11_72831745_73147318	1/1	a0001	740	286	78	58	108	10	30	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	a0002	740	2	2	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	a0003	740	1	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	a0004	740	1	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCMR_chr1_206898317_206926941	1/1	a0001	390	368	94	69	165	12	26	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0002	390	4	4	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0003	390	3	0	0	3	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0004	390	1	0	0	0	0	1	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0005	386	1	0	0	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0006	390	1	0	1	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0007	390	1	0	0	0	0	1	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	a0008	390	1	0	0	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCN1_chr9_134898232_134922912	1/1	a0001	326	417	87	75	192	16	45	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0002	326	6	5	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0003	326	2	2	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0004	326	2	0	2	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0005	326	2	0	0	2	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0006	62	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0007	326	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0008	326	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0009	326	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	a0010	326	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN2_chr9_134875810_134892523	1/0	a0001	313	293	38	47	171	8	28	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/1	a0002	313	91	34	23	14	6	13	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0003	313	73	21	11	35	2	4	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0004	313	5	0	0	5	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0005	313	3	0	0	0	0	3	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0006	313	2	2	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0007	313	1	0	1	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0008	313	1	0	0	1	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0009	313	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0010	313	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	a0011	313	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN3_chr1_27364110_27379824	1/1	a0001	299	392	88	78	165	14	45	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	a0002	180	6	3	2	0	0	1	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	a0003	299	4	0	0	4	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	a0004	299	1	0	0	1	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	a0005	299	1	1	0	0	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCRL1_chr1_157789403_157825120	1/0	a0001	429	371	71	64	184	16	35	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0002	429	18	18	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120