JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FCRL1_chr1_157789403_157825120	0/0	a0003	429	5	5	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0004	429	2	2	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0005	429	2	0	0	2	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0006	429	1	0	1	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0007	429	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0008	429	1	0	0	0	0	1	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0009	429	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/1	a0010	429	1	0	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0011	429	1	0	1	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0012	429	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	a0013	429	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL2_chr1_157740733_157782132	1/1	a0001	508	374	87	71	168	14	32	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	a0002	508	3	3	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	a0003	317	1	0	1	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	a0004	508	1	0	0	0	0	1	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	a0005	508	1	0	0	0	0	1	copy fasta	FCRL2	chr1	157740733	157782132
FCRL3_chr1_157671481_157705769	1/0	a0001	734	160	27	30	78	4	20	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/1	a0002	734	159	39	31	75	8	5	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0003	734	14	4	4	4	0	2	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0004	734	11	0	0	11	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0005	734	11	11	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0006	734	7	6	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0007	734	4	0	0	3	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0008	734	3	0	0	3	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0009	734	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0010	734	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0011	734	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0012	734	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0013	734	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0014	734	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0015	734	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0016	734	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0017	603	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0018	734	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	a0019	734	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL4_chr1_157568747_157603085	1/1	a0001	515	356	75	60	171	12	36	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0002	515	13	0	3	10	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0003	515	10	2	6	0	2	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0004	515	8	7	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0005	515	4	0	0	4	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0006	515	3	3	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0007	515	1	0	0	0	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0008	515	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0009	515	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0010	515	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0011	515	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0012	515	1	0	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0013	515	1	0	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	a0014	515	1	0	0	0	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL5_chr1_157508377_157557515	0/1	a0001	977	137	8	25	80	8	15	copy fasta	FCRL5	chr1	157508377	157557515