JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FCRL5_chr1_157508377_157557515	0/0	a0002	977	55	19	15	14	2	5	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0003	977	44	2	1	40	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	1/0	a0004	977	41	16	16	0	4	4	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0005	977	40	15	0	21	0	4	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0006	977	12	2	3	1	0	6	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0007	977	8	8	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0008	977	5	5	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0009	977	5	5	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0010	977	3	2	1	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0011	977	3	3	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0012	977	3	3	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0013	977	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0014	977	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0015	977	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0016	977	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0017	977	1	0	1	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0018	977	1	0	0	0	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0019	977	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0020	977	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	a0021	977	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL6_chr1_159797360_159821257	1/0	a0001	434	323	36	57	179	9	41	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0002	434	86	36	12	33	1	4	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/1	a0003	422	15	1	8	1	2	2	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0004	434	11	11	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0005	434	3	3	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0006	434	3	3	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0007	434	2	2	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0008	122	1	0	0	0	0	1	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0009	434	1	1	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0010	422	1	0	0	0	0	1	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0011	434	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0012	434	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0013	422	1	0	1	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0014	434	1	1	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0015	434	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	a0016	434	1	0	0	0	0	1	copy fasta	FCRL6	chr1	159797360	159821257
FCRLA_chr1_161702229_161719352	0/0	a0001	359	218	64	28	111	2	13	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/1	a0002	359	140	13	35	57	10	24	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	1/0	a0003	359	96	11	18	52	4	10	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0004	359	8	7	1	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0005	359	3	3	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0006	359	2	0	0	2	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0007	359	2	0	0	2	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0008	359	1	1	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0009	359	1	0	0	0	0	1	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	a0010	359	1	1	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLB_chr1_161716544_161733143	1/1	a0001	426	272	31	64	130	12	33	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0002	426	138	59	6	64	1	8	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0003	426	28	0	4	21	2	1	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0004	426	4	1	0	0	1	2	copy fasta	FCRLB	chr1	161716544	161733143