JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FCRLB_chr1_161716544_161733143	0/0	a0005	426	4	4	0	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0006	426	3	0	0	3	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0007	426	2	0	2	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0008	426	2	0	0	0	0	2	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0009	426	1	1	0	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0010	426	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	a0011	426	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCSK_chr16_70449595_70485274	1/1	a0001	1084	316	64	71	125	14	40	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0002	1084	11	11	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0003	1084	10	0	0	10	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0004	1084	5	5	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0005	1084	2	2	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0006	1084	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0007	1084	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0008	305	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0009	1084	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0010	1084	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0011	1084	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0012	763	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0013	1084	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0014	1084	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0015	1084	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0016	1084	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	a0017	1084	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FDCSP_chr4_70221124_70240252	1/1	a0001	85	448	96	74	218	14	44	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	0/0	a0002	85	2	0	2	0	0	0	copy fasta	FDCSP	chr4	70221124	70240252
FDFT1_chr8_11797741_11844298	1/1	a0001	417	434	97	75	199	15	46	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0002	417	11	0	5	1	1	4	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0003	417	4	0	0	4	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0004	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0005	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0006	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0007	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0008	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0009	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0010	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0011	417	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	a0012	417	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDPS_chr1_155303866_155325665	1/1	a0001	419	339	94	57	133	13	40	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	a0002	419	2	2	0	0	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	a0003	419	2	0	0	0	1	1	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	a0004	419	1	0	0	0	0	1	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	a0005	419	1	0	1	0	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	a0006	419	1	0	0	1	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDX1_chr11_110424948_110469884	1/1	a0001	184	399	88	70	185	12	42	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	a0002	184	1	0	0	1	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX2_chr19_10305045_10321015	1/1	a0001	183	427	90	86	190	17	42	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	a0002	183	11	0	0	9	0	2	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	a0003	183	3	3	0	0	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	a0004	183	1	1	0	0	0	0	copy fasta	FDX2	chr19	10305045	10321015