JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FDX2_chr19_10305045_10321015	0/0	a0005	183	1	0	0	1	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	a0006	183	1	0	0	0	1	0	copy fasta	FDX2	chr19	10305045	10321015
FDXACB1_chr11_111869056_111884165	0/1	a0001	624	343	79	55	161	9	38	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	1/0	a0002	624	21	3	12	4	1	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0003	624	6	6	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0004	624	6	0	0	6	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0005	624	2	0	1	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0006	624	2	0	2	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0007	624	2	2	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0008	624	2	0	2	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0009	624	1	0	1	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0010	624	1	0	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0011	624	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0012	624	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0013	624	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0014	624	1	0	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0015	624	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	a0016	624	1	0	1	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXR_chr17_74857497_74877994	0/1	a0001	491	286	85	58	96	13	33	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	1/0	a0002	491	96	2	12	63	5	13	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0003	491	19	6	0	11	0	2	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0004	491	2	2	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0005	491	2	0	0	2	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0006	491	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0007	491	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0008	491	1	0	0	0	0	1	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0009	491	1	0	0	0	0	1	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0010	491	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0011	491	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	a0012	491	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FECH_chr18_57539377_57591702	1/1	a0001	423	389	80	68	183	15	41	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0002	423	15	5	7	0	1	2	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0003	423	12	6	2	1	2	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0004	423	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0005	423	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0006	423	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0007	423	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0008	423	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	a0009	423	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FEM1A_chr19_4786734_4806273	1/1	a0001	669	416	89	83	176	18	48	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0002	669	5	5	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0003	669	4	3	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0004	669	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0005	669	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0006	669	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0007	669	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	a0008	669	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1B_chr15_68272745_68300862	1/1	a0001	627	309	94	64	94	16	39	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	a0002	627	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	a0003	627	1	0	0	0	0	1	copy fasta	FEM1B	chr15	68272745	68300862