JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FEM1B_chr15_68272745_68300862	0/0	a0004	627	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1C_chr5_115515908_115549775	1/1	a0001	617	404	88	66	188	18	42	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	a0002	617	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	a0003	617	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEN1_chr11_61787911_61802238	1/1	a0001	380	336	87	64	133	18	32	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	a0002	380	1	0	0	1	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	a0003	380	1	1	0	0	0	0	copy fasta	FEN1	chr11	61787911	61802238
FER1L5_chr2_96637764_96709883	0/0	a0001	2057	125	60	22	32	5	6	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	1/1	a0002	2057	68	7	14	29	6	10	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0003	2057	10	9	1	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0004	2057	5	5	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0005	2057	3	3	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0006	2057	2	0	1	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0007	2057	2	0	0	2	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0008	2057	2	0	2	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0009	246	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0010	398	1	0	0	0	1	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0011	2057	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0012	2057	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0013	2057	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0014	2057	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0015	2057	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0016	2057	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	a0017	2057	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L6_chr8_123846987_124125061	0/1	a0001	1857	117	38	25	44	4	5	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	1/0	a0002	1857	46	15	7	20	1	2	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0003	1857	7	0	3	0	1	3	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0004	1857	3	3	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0005	1857	2	0	1	0	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0006	1857	2	0	2	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0007	1857	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0008	1857	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0009	1857	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0010	1857	1	0	0	0	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0011	1857	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0012	1857	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0013	1857	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0014	1857	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0015	1857	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0016	1857	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0017	1857	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0018	1857	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0019	1857	1	0	0	0	1	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0020	1857	1	0	0	0	1	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0021	1857	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0022	1857	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0023	1857	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0024	1857	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	a0025	1857	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FERD3L_chr7_19139782_19150421	1/1	a0001	166	348	92	67	139	11	37	copy fasta	FERD3L	chr7	19139782	19150421