JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FFAR3_chr19_35353460_35365489	0/0	a0008	346	7	1	1	0	0	5	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0009	346	3	3	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0010	346	2	0	2	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0011	346	2	2	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0012	346	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0013	346	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0014	346	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR4_chr10_93561665_93595072	1/1	a0001	361	302	92	54	108	11	35	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	a0002	361	84	2	19	53	2	8	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	a0003	361	4	0	2	0	1	1	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	a0004	361	2	0	0	2	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	a0005	361	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	a0006	361	1	0	1	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FGA_chr4_154580275_154595742	1/0	a0001	644	249	48	55	97	13	35	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/1	a0002	644	151	45	17	68	5	15	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0003	644	21	0	0	21	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0004	644	2	0	0	2	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0005	644	1	1	0	0	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0006	644	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0007	644	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0008	644	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	a0009	644	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGB_chr4_154558011_154577807	1/1	a0001	491	365	91	59	165	11	37	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0002	491	67	4	17	36	4	6	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0003	491	4	0	0	4	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0004	491	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0005	491	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0006	491	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0007	491	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0008	491	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0009	491	1	0	0	0	0	1	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0010	491	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	a0011	491	1	0	0	0	1	0	copy fasta	FGB	chr4	154558011	154577807
FGD1_chrX_54440454_54501234	1/1	a0001	961	244	68	44	95	11	24	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	a0002	961	17	0	0	17	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	a0003	772	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	a0004	708	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	a0005	215	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD2_chr6_37000655_37034069	1/0	a0001	655	275	67	51	112	9	35	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/1	a0002	655	135	29	17	72	7	9	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0003	655	4	0	1	3	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0004	655	3	0	0	3	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0005	655	2	0	2	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0006	655	2	0	0	2	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0007	655	2	0	0	2	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0008	655	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0009	655	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0010	655	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0011	655	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	a0012	655	1	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069