JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FGD2_chr6_37000655_37034069	0/0	a0013	655	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD3_chr9_92942523_93041233	1/1	a0001	725	283	75	49	109	12	36	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0002	725	33	0	12	21	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0003	725	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0004	725	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0005	725	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0006	725	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0007	725	1	0	1	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	a0008	725	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD4_chr12_32394558_32651050	0/0	a0001	903	122	48	22	36	1	15	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	1/1	a0002	903	101	23	32	27	5	12	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0003	903	2	0	0	1	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0004	903	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0005	903	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0006	903	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0007	903	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0008	903	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0009	903	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	a0010	903	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD5_chr3_14813962_14939571	1/1	a0001	1462	242	38	57	102	16	27	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0002	1462	47	0	3	41	0	3	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0003	1462	12	11	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0004	1462	9	1	3	2	0	3	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0005	1462	8	8	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0006	1462	3	3	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0007	1462	2	0	0	2	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0008	1468	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0009	1462	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0010	1462	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0011	1462	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0012	1462	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0013	1462	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0014	1462	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0015	1462	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0016	1462	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0017	1462	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0018	1462	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0019	1462	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0020	1462	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0021	1462	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0022	1462	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0023	1462	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0024	1462	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0025	1462	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	a0026	1462	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD6_chr12_95071749_95222467	1/1	a0001	1430	271	61	61	96	15	36	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0002	1430	64	12	11	34	1	6	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0003	1430	29	0	0	29	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0004	1430	5	0	0	5	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0005	1430	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467