JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FGD6_chr12_95071749_95222467	0/0	a0006	1430	2	0	2	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0007	1430	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0008	1430	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0009	1430	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0010	1430	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0011	1430	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0012	1430	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0013	1430	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	a0014	1430	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGF10_chr5_44295247_44394420	1/1	a0001	208	348	85	61	158	14	28	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	a0002	208	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	a0003	208	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF11_chr17_7434512_7449937	1/1	a0001	225	346	89	66	146	14	29	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	a0002	225	1	0	0	1	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	a0003	180	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	a0004	225	1	0	0	0	0	1	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	a0005	225	1	0	0	1	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF12_chr3_192134390_192732541	0/0	a0001	181	90	58	14	12	0	6	copy fasta	FGF12	chr3	192134390	192732541
FGF13_chrX_138609727_138716717	1/1	a0001	245	239	54	49	99	11	24	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	a0002	232	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF14_chr13_101705804_101921945	1/1	a0001	247	266	88	50	82	10	34	copy fasta	FGF14	chr13	101705804	101921945
FGF16_chrX_77442389_77462278	1/1	a0001	207	307	74	48	140	13	30	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	a0002	207	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	a0003	55	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF17_chr8_22037820_22053809	0/0	a0000	0	1	0	0	1	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	1/1	a0001	216	452	98	80	208	18	46	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	a0002	216	1	0	0	1	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF18_chr5_171414647_171462626	1/1	a0001	207	387	90	74	162	18	41	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	a0002	207	1	0	0	0	0	1	copy fasta	FGF18	chr5	171414647	171462626
FGF19_chr11_69693238_69709022	1/1	a0001	216	439	97	82	196	16	46	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	a0002	216	1	1	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF1_chr5_142587178_142691090	1/1	a0001	155	340	92	64	140	12	30	copy fasta	FGF1	chr5	142587178	142691090
FGF20_chr8_16987181_17007345	1/1	a0001	211	433	81	82	202	18	48	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	a0002	211	12	12	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	a0003	211	7	0	0	7	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	a0004	211	2	0	0	2	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	a0005	211	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	a0006	211	1	0	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF21_chr19_48750524_48763330	0/1	a0001	209	425	91	75	206	11	41	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	1/0	a0002	209	28	4	9	0	5	9	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	a0003	209	1	0	0	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	a0004	209	1	1	0	0	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	a0005	209	1	0	0	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF22_chr19_634879_649373	0/0	a0000	0	29	3	4	18	0	4	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	1/1	a0001	170	391	87	80	165	16	41	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	a0002	170	9	9	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	a0003	170	2	0	0	2	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	a0004	170	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	a0005	170	1	1	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	a0006	170	1	0	0	0	0	1	copy fasta	FGF22	chr19	634879	649373