JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FGF23_chr12_4363227_4384712	1/1	a0001	251	365	84	57	167	13	42	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	a0002	251	60	11	15	30	2	2	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	a0003	251	1	0	0	1	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	a0004	251	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	a0005	251	1	0	0	0	1	0	copy fasta	FGF23	chr12	4363227	4384712
FGF2_chr4_122821831_122903236	1/1	a0001	155	256	90	58	60	10	36	copy fasta	FGF2	chr4	122821831	122903236
FGF3_chr11_69804968_69824416	1/1	a0001	239	417	92	80	184	16	43	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	a0002	130	1	0	0	0	0	1	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	a0003	239	1	0	0	1	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	a0004	239	1	0	0	1	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	a0005	239	1	1	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	a0006	239	1	1	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF4_chr11_69766022_69780341	1/1	a0001	206	434	96	76	198	16	46	copy fasta	FGF4	chr11	69766022	69780341
FGF5_chr4_80261664_80296017	1/1	a0001	268	426	74	70	219	16	45	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	a0002	268	22	19	3	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	a0003	269	5	0	4	0	0	1	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	a0004	199	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	a0005	268	1	0	0	1	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	a0006	268	1	0	1	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF6_chr12_4429142_4450815	1/0	a0001	208	397	67	72	212	11	34	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/1	a0002	208	35	12	6	3	5	8	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	a0003	208	15	14	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	a0004	208	1	0	0	1	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	a0005	208	1	0	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	a0006	208	1	1	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF7_chr15_49418242_49493775	1/1	a0001	194	358	86	54	152	14	50	copy fasta	FGF7	chr15	49418242	49493775
FGF8_chr10_101765109_101781114	1/1	a0001	244	359	90	68	153	14	32	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	a0002	244	1	0	0	1	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF9_chr13_21666073_21709498	1/1	a0001	208	362	88	70	150	14	38	copy fasta	FGF9	chr13	21666073	21709498
FGFBP1_chr4_15930577_15943740	1/1	a0001	234	468	90	87	224	17	48	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	a0002	234	4	4	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	a0003	234	2	2	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	a0004	234	2	1	1	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	a0005	234	1	1	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	a0006	234	1	0	0	0	1	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP2_chr4_15955245_15968175	1/0	a0001	223	200	52	42	75	6	24	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/1	a0002	223	174	18	27	111	7	10	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	a0003	223	49	7	13	17	4	8	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	a0004	223	29	17	1	8	1	2	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	a0005	223	4	4	0	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	a0006	223	1	0	1	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	a0007	223	1	0	0	1	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP3_chr10_91901584_91914486	1/0	a0001	258	320	75	61	146	6	31	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/1	a0002	258	40	9	14	1	6	9	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	a0003	258	37	1	2	28	6	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	a0004	258	11	10	1	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	a0005	258	3	1	2	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	a0006	258	3	0	0	3	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	a0007	258	1	0	0	0	0	1	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	a0008	157	1	0	0	0	0	1	copy fasta	FGFBP3	chr10	91901584	91914486