JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FGFR1OP2_chr12_26933470_26971648	1/1	a0001	253	420	79	76	203	18	42	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	a0002	253	4	0	0	4	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	a0003	253	1	0	0	1	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	a0004	253	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1_chr8_38406143_38473635	1/1	a0001	822	323	63	63	147	14	34	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0002	822	4	3	1	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0003	822	3	0	0	3	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0004	822	2	0	0	0	0	2	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0005	822	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0006	822	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0007	822	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	a0008	822	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR2_chr10_121473332_121603444	1/1	a0001	821	194	58	40	68	6	20	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	a0002	821	43	29	6	8	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	a0003	821	2	0	0	2	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	a0004	821	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR3_chr4_1788293_1813867	1/1	a0001	806	365	87	79	141	11	45	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0002	806	5	0	0	5	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0003	806	3	0	0	3	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0004	806	2	0	0	2	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0005	806	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0006	806	1	0	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0007	806	1	0	0	0	1	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0008	132	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	a0009	806	1	1	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR4_chr5_177081915_177103144	0/0	a0001	802	109	11	23	55	6	14	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0002	802	106	1	21	64	3	17	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0003	802	89	48	20	3	5	13	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	1/1	a0004	802	46	29	10	0	2	3	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0005	802	7	0	0	7	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0006	802	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0007	797	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0008	802	1	0	1	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0009	807	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0010	802	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0011	802	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0012	802	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0013	802	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0014	802	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0015	802	1	0	0	0	0	1	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0016	802	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0017	796	1	0	1	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0018	802	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0019	802	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	a0020	802	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFRL1_chr4_1006626_1031898	1/1	a0001	504	350	89	73	140	13	33	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0002	504	30	3	4	11	3	9	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0003	504	12	2	3	6	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0004	504	5	0	0	4	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0005	504	3	0	0	3	0	0	copy fasta	FGFRL1	chr4	1006626	1031898