JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FGFRL1_chr4_1006626_1031898	0/0	a0006	504	2	2	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0007	504	2	0	2	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0008	504	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0009	504	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0010	504	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0011	504	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0012	501	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0013	504	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0014	504	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0015	504	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0016	504	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	a0017	504	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGGY_chr1_59292094_59767730	0/0	a0001	551	88	33	12	29	3	11	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	1/1	a0002	551	60	18	13	13	3	11	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0003	551	6	6	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0004	551	2	2	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0005	551	2	1	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0006	551	2	0	2	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0007	551	2	1	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0008	551	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0009	551	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0010	551	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	a0011	551	1	0	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGG_chr4_154599171_154617656	1/1	a0001	453	411	84	62	197	18	48	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	a0002	453	10	10	0	0	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	a0003	453	1	0	0	0	0	1	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	a0004	453	1	0	0	1	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	a0005	453	1	0	0	1	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	a0006	453	1	0	0	1	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	a0007	453	1	0	0	0	0	1	copy fasta	FGG	chr4	154599171	154617656
FGL1_chr8_17859389_17900524	0/0	a0001	312	126	18	33	64	5	6	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	1/1	a0002	312	120	12	22	55	7	22	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0003	312	47	25	5	14	1	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0004	312	34	33	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0005	312	17	1	5	11	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0006	312	5	4	1	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0007	312	4	0	2	0	2	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0008	312	3	0	0	0	1	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0009	312	2	0	0	0	0	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0010	312	2	2	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0011	312	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0012	312	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0013	312	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0014	312	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0015	312	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	a0016	312	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL2_chr7_77188369_77204819	1/1	a0001	439	327	89	57	128	15	36	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	a0002	439	101	5	20	68	1	7	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	a0003	439	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	a0004	439	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819