Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AHCTF1_chr1_246834098_246936948	0/0	a0025	2266	1	0	0	0	0	1	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0026	2266	1	0	0	0	1	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCTF1_chr1_246834098_246936948	0/0	a0027	2266	1	0	0	1	0	0	copy fasta	AHCTF1	chr1	246834098	246936948
AHCYL1_chr1_109979765_110028742	1/1	a0001	530	347	89	58	150	12	36	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	a0002	530	2	0	0	0	0	2	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL1_chr1_109979765_110028742	0/0	a0003	530	1	1	0	0	0	0	copy fasta	AHCYL1	chr1	109979765	110028742
AHCYL2_chr7_129220030_129435211	1/1	a0001	611	290	80	60	102	12	34	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	a0002	611	1	0	0	0	0	1	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	a0003	611	1	0	0	0	0	1	copy fasta	AHCYL2	chr7	129220030	129435211
AHCY_chr20_34275268_34308355	1/1	a0001	432	296	82	51	119	10	32	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	a0002	432	1	0	0	1	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	a0003	432	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	a0004	432	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	a0005	432	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHDC1_chr1_27529245_27609144	0/1	a0001	1603	152	66	27	28	8	22	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0002	1603	10	7	3	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0003	1602	9	9	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0004	1602	2	2	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0005	1603	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0006	1603	1	0	1	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	1/0	a0007	1603	1	0	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0008	1603	1	0	1	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0009	1603	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0010	1603	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	a0011	1603	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHI1_chr6_135278532_135502740	1/1	a0001	1196	201	71	50	51	9	18	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0002	1196	4	4	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0003	1196	3	0	0	3	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0004	1196	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0005	1196	2	0	1	0	1	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0006	1196	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0007	1196	1	0	1	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0008	1196	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0009	1196	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0010	1196	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0011	1196	1	0	1	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	a0012	1196	1	0	1	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHNAK2_chr14_104932253_104983374	0/1	a0001	5135	21	1	14	0	4	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	1/0	a0002	5795	13	0	0	12	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0003	5795	11	0	1	8	2	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0004	5960	9	0	0	8	0	1	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0005	5795	9	1	4	1	1	2	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0006	5960	8	0	0	8	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0007	4970	8	1	6	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0008	5795	6	0	0	6	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0009	5960	4	0	0	4	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0010	5960	4	0	0	4	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0011	5135	4	0	0	4	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0012	5795	4	0	0	4	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	a0013	5795	4	0	0	4	0	0	copy fasta	AHNAK2	chr14	104932253	104983374